Prupe.1G290600_v2.0.a1

Floral homeotic protein APETALA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002429
Physical Location & Seq
Forward (+)
28929210 .. 28932070
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G290600.1

Sequence Viewer

Length: 717 bp
ATGGGAAGGGGTAGGGTTCAGCTGAAGCGCATAGAGAACAAGATCAACAGACAGGTGACTTTTTCCAAAAGAAGAACTGGGTTGCTCAAGAAGGCTCATGAGATCTCTGTCTTGTGCGATGCTCAGGTTGCTCTGGTTGTCTTCTCCAACAAGGGCAAACTCTGTGAGTACGCCACGGATTCATGCATGGATCAAATACTTGACCGCTACGAGAGATACTCTTACGCAGAAAGACAGCTAGTCGAACCCGATATTGAATCACAGTGTAACTGGACCTTCGAATATTCTAGACTAAAGGCTAAAGTTGAGCTTTTGCAAAGAAATCAGAGGCACTATTTGGGAGAAGATCTCGATTCGTTGACTCTGAAAGAGATCCAAAGTTTGGAGCACCAGCTCGAGACCGCTCTTAAACAAATTCGATCAAGAAAAAACCAACTCATGCATGAGTCCATCTCTGAGCTTCAGAGAAAGGAAAGGGCGATGCAGGAGCAAAATAACTTGTTGGCAAAGAAGATCAAGGAGAAGGAGAAGGCCGCAGCTGAGGAGGTTCATAACTGGGAGCAGCAAAACAATGGCCTCAACTTGCTTCCACAGCCGCTTCCATGTCTAAACATGGGGGGCACGCAGCAAGATGAATTCCTTCAGGTGAGGAGGAACCAGCTGGACCTTACTCTGGAACCATTATATTCATGCAACCTCGGATGCTTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

239

Amino Acids

27.79

Weight (kDa)

8.41

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 404
AciI CCGC 4 cut(s) 205, 402, 534, 596
AclWI GGATC 2 cut(s) 198, 367
AcsI RAATTY 2 cut(s) 414, 635
AcuI CTGAAG 3 cut(s) 44, 446, 626
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 382, 673
AgsI TTSAA 1 cut(s) 257
AhdI GACNNNNNGTC 1 cut(s) 239
AluBI AGCT 7 cut(s) 22, 238, 310, 394, 460, 539, 661
AluI AGCT 7 cut(s) 22, 238, 310, 394, 460, 539, 661
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 2 cut(s) 198, 367
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 531, 574
ApeKI GCWGC 4 cut(s) 536, 562, 625, 710
ApoI RAATTY 2 cut(s) 414, 635
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 273, 664
AsuHPI GGTGA 2 cut(s) 67, 658
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 2 cut(s) 273, 664
BaeGI GKGCMC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 548, 574, 637, 697
BccI CCATC 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 2 cut(s) 239, 288
BglII AGATCT 2 cut(s) 102, 346
BisI GCNGC 6 cut(s) 534, 537, 563, 596, 626, 711
BlsI GCNGC 6 cut(s) 535, 538, 564, 597, 627, 712
Bme18I GGWCC 2 cut(s) 273, 664
BmeRI GACNNNNNGTC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 273, 664
BmiI GGNNCC 2 cut(s) 656, 678
BmrI ACTGGG 2 cut(s) 87, 565
BmsI GCATC 3 cut(s) 109, 471, 692
BmuI ACTGGG 2 cut(s) 87, 565
BpiI GAAGAC 1 cut(s) 133
BplI GAGNNNNNCTC 6 cut(s) 203, 235, 333, 365, 437, 469
Bpu10I CCTNAGC 2 cut(s) 123, 540
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 174, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 673
Bse1I ACTGG 3 cut(s) 82, 275, 560
BseDI CCNNGG 2 cut(s) 174, 697
BseGI GGATG 1 cut(s) 707
BseLI CCNNNNNNNGG 2 cut(s) 382, 673
BseMII CTCAG 3 cut(s) 137, 447, 531
BseNI ACTGG 3 cut(s) 82, 275, 560
BseRI GAGGAG 2 cut(s) 557, 664
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 4 cut(s) 548, 574, 637, 697
BshFI GGCC 2 cut(s) 533, 576
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 382, 673
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 2 cut(s) 533, 576
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 390, 623
Bsp143I GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
BspACI CCGC 4 cut(s) 205, 402, 534, 596
BspANI GGCC 2 cut(s) 533, 576
BspCNI CTCAG 3 cut(s) 136, 448, 532
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 656, 678
BspPI GGATC 2 cut(s) 198, 367
BspT104I TTCGAA 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 404
BsrI ACTGG 3 cut(s) 82, 275, 560
BssECI CCNNGG 2 cut(s) 174, 697
BssMI GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
Bst4CI ACNGT 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 123, 456, 540
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 707
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 7 cut(s) 45, 105, 193, 349, 375, 422, 516
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
BstMWI GCNNNNNNNGC 2 cut(s) 128, 592
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 4 cut(s) 548, 574, 637, 697
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 3 cut(s) 102, 346, 372
BstYI RGATCY 3 cut(s) 102, 346, 372
BsuRI GGCC 2 cut(s) 533, 576
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 2 cut(s) 132, 494
BtsCI GGATG 1 cut(s) 707
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 623
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 273, 664
Csp6I GTAC 1 cut(s) 169
CviAII CATG 8 cut(s) 98, 183, 187, 439, 443, 603, 613, 690
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 123, 456, 540
DpnI GATC 7 cut(s) 44, 104, 192, 348, 374, 421, 515
DpnII GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
DriI GACNNNNNGTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 273, 664
Eco57I CTGAAG 3 cut(s) 44, 446, 626
Eco88I CYCGRG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 635
EcoT22I ATGCAT 2 cut(s) 188, 444
FaeI CATG 8 cut(s) 101, 186, 190, 442, 446, 606, 616, 693
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 8 cut(s) 97, 182, 186, 438, 442, 602, 612, 689
Fnu4HI GCNGC 6 cut(s) 534, 537, 563, 596, 626, 711
Fsp4HI GCNGC 6 cut(s) 534, 537, 563, 596, 626, 711
FspBI CTAG 2 cut(s) 239, 288
GlaI GCGC 1 cut(s) 29
GluI GCNGC 6 cut(s) 534, 537, 563, 596, 626, 711
HaeIII GGCC 2 cut(s) 533, 576
HhaI GCGC 1 cut(s) 30
Hin1II CATG 8 cut(s) 101, 186, 190, 442, 446, 606, 616, 693
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 5 cut(s) 179, 257, 353, 361, 446
HphI GGTGA 2 cut(s) 67, 658
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 5 cut(s) 327, 366, 457, 465, 701
Hpy188III TCNNGA 7 cut(s) 88, 98, 288, 350, 397, 423, 674
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 5 cut(s) 85, 286, 517, 523, 650
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 186, 316, 442, 484, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 592
HpyF3I CTNAG 3 cut(s) 123, 456, 540
Hsp92II CATG 8 cut(s) 101, 186, 190, 442, 446, 606, 616, 693
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
LmnI GCTCC 3 cut(s) 385, 487, 559
Lsp1109I GCAGC 4 cut(s) 548, 574, 637, 697
LweI GCATC 3 cut(s) 109, 471, 692
MaeI CTAG 2 cut(s) 239, 288
MaeIII GTNAC 2 cut(s) 55, 266
MalI GATC 7 cut(s) 44, 104, 192, 348, 374, 421, 515
MbiI CCGCTC 1 cut(s) 404
MboI GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
MboII GAAGA 4 cut(s) 84, 133, 356, 523
MflI RGATCY 3 cut(s) 102, 346, 372
MhlI GDGCHC 2 cut(s) 390, 623
MluCI AATT 2 cut(s) 414, 635
MlyI GAGTC 2 cut(s) 355, 455
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 321, 535, 538, 587, 642, 645, 707
Mph1103I ATGCAT 2 cut(s) 188, 444
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 3 cut(s) 22, 539, 661
MwoI GCNNNNNNNGC 2 cut(s) 128, 592
NdeII GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
NlaIII CATG 8 cut(s) 101, 186, 190, 442, 446, 606, 616, 693
NlaIV GGNNCC 2 cut(s) 656, 678
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 2 cut(s) 188, 444
NspV TTCGAA 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 395
PagI TCATGA 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 3 cut(s) 179, 257, 353
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 6 cut(s) 535, 538, 564, 597, 627, 712
PleI GAGTC 2 cut(s) 355, 454
PpsI GAGTC 2 cut(s) 355, 454
PspN4I GGNNCC 2 cut(s) 656, 678
PspPI GGNCC 2 cut(s) 273, 664
PsuI RGATCY 3 cut(s) 102, 346, 372
PvuII CAGCTG 3 cut(s) 22, 539, 661
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 6 cut(s) 534, 537, 563, 596, 626, 711
Sau3AI GATC 7 cut(s) 42, 102, 190, 346, 372, 419, 513
Sau96I GGNCC 2 cut(s) 273, 664
SchI GAGTC 2 cut(s) 355, 455
SduI GDGCHC 2 cut(s) 390, 623
SfaNI GCATC 3 cut(s) 109, 471, 692
Sfr274I CTCGAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 2 cut(s) 273, 664
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 86, 395
SmoI CTYRAG 2 cut(s) 86, 395
Sse9I AATT 2 cut(s) 414, 635
SsiI CCGC 4 cut(s) 205, 402, 534, 596
SspI AATATT 1 cut(s) 284
SspMI CTAG 2 cut(s) 239, 288
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 5 cut(s) 243, 279, 351, 396, 418
TasI AATT 2 cut(s) 414, 635
TauI GCSGC 2 cut(s) 536, 598
TfiI GAWTC 3 cut(s) 179, 257, 353
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 4 cut(s) 536, 562, 625, 710
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 171, 539, 648, 678
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 273, 664
XapI RAATTY 2 cut(s) 414, 635
XbaI TCTAGA 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 2 cut(s) 239, 288
Zsp2I ATGCAT 2 cut(s) 188, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.