Rorug04G0304300

Floral homeotic protein APETALA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002429
Physical Location & Seq
Forward (+)
47952686 .. 47955086
2401 bp
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UTR
Exon/CDS
Intron
Rorug04G0304300.1

Sequence Viewer

Length: 303 bp
ATGGAGTCCAATAAGTACACAGGTGTTCGGGAAACAATGCCGCAGAATAGTATTGTGATTATTGATATGAGTGTGCCGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGGATCCACTGAATGTCCAAATATTCCTCAAAATGCATAGGTCTGATTATGCTGAAAGATGGCTGAAGGAAATGCAAAAGATTGATGAGGACCACACCTTAACTCAACTTGAAATAGCATGGCAAAATCTGGTTGTGGTAATTCATCAAAATAAATACACTAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

100

Amino Acids

12.0

Weight (kDa)

6.27

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coatomer_E PF04733 46 - 90 1.6e-15 Coatomer epsilon subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 131, 144
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 2 cut(s) 131, 245
AlwI GGATC 2 cut(s) 131, 144
AspS9I GGNCC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 136
BccI CCATC 1 cut(s) 186
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 79
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 2 cut(s) 131, 144
BssMI GATC 1 cut(s) 136
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 252
CviJI RGCY 1 cut(s) 196
CviKI_1 RGCY 1 cut(s) 196
CviQI GTAC 1 cut(s) 16
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 1 cut(s) 255
FaiI YATR 5 cut(s) 68, 102, 171, 183, 253
FatI CATG 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 255
HinfI GANTC 4 cut(s) 5, 79, 90, 104
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 96, 169, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 2 cut(s) 6, 248
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MflI RGATCY 1 cut(s) 136
MluCI AATT 2 cut(s) 273, 295
MlyI GAGTC 2 cut(s) 14, 84
MnlI CCTC 2 cut(s) 170, 214
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 171
PfeI GAWTC 2 cut(s) 79, 104
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 2 cut(s) 13, 84
PpsI GAGTC 2 cut(s) 13, 84
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 14, 84
SetI ASST 3 cut(s) 25, 176, 233
SgeI CNNG 6 cut(s) 33, 41, 135, 254, 264, 275
SinI GGWCC 1 cut(s) 223
Sse9I AATT 2 cut(s) 273, 295
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 156
TasI AATT 2 cut(s) 273, 295
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 79, 104
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 117, 266
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.