Rh2AG579700

K-box region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002429
Physical Location & Seq
Reverse (-)
80897116 .. 80901003
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG579700.1

Sequence Viewer

Length: 696 bp
ATGGAGATGGAGATTGCACGGAACCACTTCCGGCTTTGGGTCACAACTCAGAACTACCCGTGCAGTTCAGATTATCGAGCTAGGGGACAGATCATCGGACGTAGTGGCATGGAGGGGATCCTGGAGCGATATGAACAATACTCGTATGCAGAAAGGCAGAGCATGGGCGTTCCTGCTTCTGAATCACAGGGAAACTGGTCCATGGAATTTCCCAAGCTTACGGCAAGGATTGAAATCTTACAAAGGAAAATAAGGAATTACACGGGAGAGGATTTAGACCCCTTAAGCTTGAGGGAGCTTCAAAGTTTGGAGCAACAGATTGATACAGCTCTTAAGCGCGTGCGAGCAAGAAAGAACCAAGTAATGCATGAATCCATTTCAGAGATGCAGAAAAAGCACAGGACACTGCAAGAGCAAAACAACTCGCTAGCAAAGAAGCTGAAGGAGAATGAAAAGCTTCTGCAGGAAGAACCTAATAATAATCAGCAGCCAAACCCCTCAACCCTCGTCTTAATGCCGCCACTGCAAGCTACATCACCACCAGCCCTACTCTCTTCTCTAACTATTGGTGGGGCTTTCCAGGGAAGAGGAGACGCAATGGATGAAGATGCTGAGGATCATCAGGGAAGCGCTCAAACTCGGCCTGCCAGTAACACACTCATGCCACCATGGATGGTTCGCCATTTGAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

231

Amino Acids

26.45

Weight (kDa)

6.99

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 61 - 147 6.3e-29 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 1 cut(s) 518
AclWI GGATC 3 cut(s) 112, 125, 624
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 461
AfeI AGCGCT 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 37
AflII CTTAAG 2 cut(s) 283, 332
AgsI TTSAA 3 cut(s) 233, 302, 688
AjnI CCWGG 2 cut(s) 120, 579
AluBI AGCT 8 cut(s) 80, 217, 288, 298, 329, 439, 457, 530
AluI AGCT 8 cut(s) 80, 217, 288, 298, 329, 439, 457, 530
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 3 cut(s) 112, 125, 624
Aor51HI AGCGCT 1 cut(s) 631
AoxI GGCC 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 2 cut(s) 26, 456
AspLEI GCGC 2 cut(s) 339, 632
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 528
AsuNHI GCTAGC 1 cut(s) 427
AvaII GGWCC 1 cut(s) 198
BamHI GGATCC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 499
BccI CCATC 1 cut(s) 667
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 122, 581
BcoDI GTCTC 1 cut(s) 585
BfaI CTAG 2 cut(s) 81, 428
BfmI CTRYAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 633
BfrI CTTAAG 2 cut(s) 283, 332
BisI GCNGC 2 cut(s) 488, 518
BlsI GCNGC 2 cut(s) 489, 519
Bme1390I CCNGG 2 cut(s) 122, 581
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 23, 119
BmrFI CCNGG 2 cut(s) 122, 581
BmsI GCATC 2 cut(s) 375, 598
BmtI GCTAGC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 201, 580, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 200, 648
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 122, 581
BseDI CCNNGG 3 cut(s) 201, 580, 668
BseGI GGATG 2 cut(s) 607, 678
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 62, 603
BseNI ACTGG 2 cut(s) 200, 648
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 643
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 90, 117, 616
Bsp19I CCATGG 2 cut(s) 201, 668
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 2 cut(s) 61, 604
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 23, 119
BspMAI CTGCAG 1 cut(s) 465
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 3 cut(s) 112, 125, 624
BspTI CTTAAG 2 cut(s) 283, 332
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 2 cut(s) 200, 648
BssECI CCNNGG 3 cut(s) 201, 580, 668
BssMI GATC 3 cut(s) 90, 117, 616
BssT1I CCWWGG 2 cut(s) 201, 668
Bst2UI CCWGG 2 cut(s) 122, 581
Bst6I CTCTTC 2 cut(s) 559, 580
BstAFI CTTAAG 2 cut(s) 283, 332
BstC8I GCNNGC 5 cut(s) 341, 345, 429, 528, 645
BstDEI CTNAG 2 cut(s) 48, 612
BstDSI CCRYGG 2 cut(s) 201, 668
BstF5I GGATG 2 cut(s) 607, 678
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 2 cut(s) 339, 632
BstKTI GATC 3 cut(s) 93, 120, 619
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 3 cut(s) 90, 117, 616
BstMWI GCNNNNNNNGC 2 cut(s) 394, 523
BstNI CCWGG 2 cut(s) 122, 581
BstSCI CCNGG 2 cut(s) 120, 579
BstSFI CTRYAG 1 cut(s) 461
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 2 cut(s) 201, 668
BtsCI GGATG 2 cut(s) 607, 678
BtsI GCAGTG 2 cut(s) 404, 521
BtsIMutI CAGTG 2 cut(s) 404, 521
Cac8I GCNNGC 5 cut(s) 341, 345, 429, 528, 645
CfoI GCGC 2 cut(s) 339, 632
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 602
CviAII CATG 6 cut(s) 109, 163, 202, 368, 661, 669
DdeI CTNAG 2 cut(s) 48, 612
DpnI GATC 3 cut(s) 92, 119, 618
DpnII GATC 3 cut(s) 90, 117, 616
Eam1104I CTCTTC 2 cut(s) 559, 580
EarI CTCTTC 2 cut(s) 559, 580
Eco130I CCWWGG 2 cut(s) 201, 668
Eco47I GGWCC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 120, 579
EcoT14I CCWWGG 2 cut(s) 201, 668
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 201, 668
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 6 cut(s) 112, 166, 205, 371, 664, 672
FaiI YATR 8 cut(s) 110, 132, 147, 164, 203, 369, 662, 670
FaqI GGGAC 1 cut(s) 99
FatI CATG 6 cut(s) 108, 162, 201, 367, 660, 668
Fnu4HI GCNGC 2 cut(s) 488, 518
FokI GGATG 2 cut(s) 614, 685
Fsp4HI GCNGC 2 cut(s) 488, 518
FspBI CTAG 2 cut(s) 81, 428
GlaI GCGC 2 cut(s) 338, 631
GluI GCNGC 2 cut(s) 488, 518
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 633
HaeIII GGCC 1 cut(s) 643
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 339, 632
Hin1II CATG 6 cut(s) 112, 166, 205, 371, 664, 672
Hin6I GCGC 2 cut(s) 337, 630
HinP1I GCGC 2 cut(s) 337, 630
HindIII AAGCTT 3 cut(s) 215, 286, 455
HinfI GANTC 2 cut(s) 182, 371
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 528
Hpy188I TCNGA 5 cut(s) 51, 70, 98, 181, 382
HpyAV CCTTC 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 8 cut(s) 17, 63, 149, 367, 388, 409, 463, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 523
HpyF3I CTNAG 2 cut(s) 48, 612
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 6 cut(s) 112, 166, 205, 371, 664, 672
HspAI GCGC 2 cut(s) 337, 630
Kzo9I GATC 3 cut(s) 90, 117, 616
LmnI GCTCC 3 cut(s) 124, 295, 310
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 2 cut(s) 375, 598
MaeI CTAG 2 cut(s) 81, 428
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 40, 650
MalI GATC 3 cut(s) 92, 119, 618
MboI GATC 3 cut(s) 90, 117, 616
MboII GAAGA 4 cut(s) 479, 546, 597, 617
MflI RGATCY 1 cut(s) 117
MluCI AATT 2 cut(s) 206, 256
MnlI CCTC 7 cut(s) 106, 262, 285, 508, 515, 581, 607
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 2 cut(s) 26, 456
MseI TTAA 3 cut(s) 284, 333, 512
MslI CAYNNNNRTG 1 cut(s) 659
MspCI CTTAAG 2 cut(s) 283, 332
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 2 cut(s) 122, 581
MvaI CCWGG 2 cut(s) 122, 581
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 394, 523
NcoI CCATGG 2 cut(s) 201, 668
NdeII GATC 3 cut(s) 90, 117, 616
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 6 cut(s) 112, 166, 205, 371, 664, 672
NlaIV GGNNCC 2 cut(s) 23, 119
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 369
PdmI GAANNNNTTC 2 cut(s) 26, 456
PfeI GAWTC 2 cut(s) 182, 371
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 489, 519
Psp6I CCWGG 2 cut(s) 120, 579
PspGI CCWGG 2 cut(s) 120, 579
PspN4I GGNNCC 2 cut(s) 23, 119
PspPI GGNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 465
PsuI RGATCY 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 3 cut(s) 284, 333, 512
SatI GCNGC 2 cut(s) 488, 518
Sau3AI GATC 3 cut(s) 90, 117, 616
Sau96I GGNCC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 122, 581
SfaNI GCATC 2 cut(s) 375, 598
SfcI CTRYAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 3 cut(s) 283, 289, 332
SmoI CTYRAG 3 cut(s) 283, 289, 332
Sse9I AATT 2 cut(s) 206, 256
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 81, 428
StyD4I CCNGG 2 cut(s) 120, 579
StyI CCWWGG 2 cut(s) 201, 668
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 206, 256
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 2 cut(s) 182, 371
Tru1I TTAA 3 cut(s) 284, 333, 512
Tru9I TTAA 3 cut(s) 284, 333, 512
TscAI CASTG 2 cut(s) 411, 528
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 147, 384, 465, 618
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 2 cut(s) 411, 528
Vha464I CTTAAG 2 cut(s) 283, 332
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 26, 456
XspI CTAG 2 cut(s) 81, 428
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.