Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Forward (+)

12374259 .. 12376367

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATACATAACAAGCTACTCATTGCAGGGTCGATCATCTTGAATCTTGTTTTCACCATTCATATTCTTTATAATAATACAAGCACATGGAGTCCAACGTGGACCAATAGAGCCGCCTTGGAGGCAGAAGCTGCAGCCTCTGTTTCATGCTCAGGCCATGGCAGATCTTACGTGGACGGTCTTGGTGTCCTTGACGGCCATAAACCTTGTGAGTGTCACGATTGCTACACAGGCAAAGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTTCTTGGAGCCTTTCTGGATTCGAAAGGCAGAGGAAAGTGCGGTTGTTGAGTCAGGATGGCACAGGATGAGTTATACTTTTAACGGATATGGCTTGTTTATGTCGGCAGAGCTTGAGAAGATCATTAGAAAGTTACATAATGTAGTGGGAAATGCAGTTACTGATAACAGATTCATAATCTTTGGAGCTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCTCAAACAAATTCATTATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATTTGTACAAACAACAAGCAGATTTCTTTAATTCTACCAATCTCAAGTTTGAAGGAGATGCGTCTGCGTGGAAGAGGAGCGAGCGCAATGATGATATTAAACAAGTTATAGAGATAGTGACATCTCCGAATAATCCAGATGGGAAGCTGAAAAGAGCGGTTCTTGATGGTCCTAATGTGAAATACATTCATGATTATGCTTACTACTGGCCTTATTTTTCACCTATTACACGTCAAGCTGATGAAGATTTGAGCTTGTTCAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGGCTGGGCATTAGTAAAAGAGAAAACTGTTTATGAAAAAATGAAAATATATATAAGTCTAAGTAGTATGGGAGTTTCAAGAGACACACAGCTTCGTGCTTTGCAGTTGCTTAAAGTAGTGATTGGTGATGGAGGCAATGAAATATTCCGTTTTGGTTATGGAACCTTGAAAAAAAGATGGGAGATTTTGAACAAGATTTTTTCCATGTCTACGCGTTTTTCGCTCGAAACTATCAAACCTGAGTATTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACCAGAAGACACAGACTGCTATGAGATTTTCAAAGCGGCGAAGATAACAGGACGTAATGGGGAAATGTTTGGATCGGATGAAAGGTTTGTGCGGCTAAGTCTCATCAGATCACAAGACGACTTTGATCAGCTTATTGCAATGTTGAAGAAGTTTGTCTCCAAGGAAGCTGTAGTTGTTGACTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

457

Amino Acids

51.65

Weight (kDa)

8.22

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EGF_alliinase	PF04863	33 - 88	1.3e-26	Alliinase EGF-like domain
Alliinase_C	PF04864	90 - 447	5.9e-157	Allinase
Aminotran_1_2	PF00155	93 - 311	2.4e-06	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	1085
AccII	CGCG	1 cut(s)	1090
AciI	CCGC	5 cut(s)	114, 335, 734, 1220, 1276
AclWI	GGATC	1 cut(s)	1264
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	1 cut(s)	584
AflIII	ACRYGT	2 cut(s)	806, 1088
AgsI	TTSAA	9 cut(s)	43, 549, 629, 954, 1045, 1066, 1135, 1216, 1330
AhdI	GACNNNNNGTC	1 cut(s)	855
AjiI	CACGTC	1 cut(s)	809
Alw26I	GTCTC	7 cut(s)	279, 528, 845, 951, 1177, 1289, 1345
AlwI	GGATC	1 cut(s)	1264
AlwNI	CAGNNNCTG	4 cut(s)	131, 140, 455, 509
AoxI	GGCC	3 cut(s)	154, 196, 785
ApeKI	GCWGC	3 cut(s)	131, 134, 503
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	102, 746
AsuHPI	GGTGA	4 cut(s)	46, 789, 1013, 1183
AsuII	TTCGAA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	102, 746
BbsI	GAAGAC	1 cut(s)	1197
BbvI	GCAGC	3 cut(s)	118, 146, 515
BccI	CCATC	5 cut(s)	345, 710, 737, 998, 1047
BceAI	ACGGC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	1309
BcoDI	GTCTC	7 cut(s)	279, 528, 845, 951, 1177, 1289, 1345
BfmI	CTRYAG	3 cut(s)	132, 852, 1353
BglI	GCCNNNNNGGC	1 cut(s)	122
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	6 cut(s)	114, 132, 135, 504, 1221, 1277
BlsI	GCNGC	6 cut(s)	115, 133, 136, 505, 1222, 1278
Bme18I	GGWCC	2 cut(s)	102, 746
BmeRI	GACNNNNNGTC	1 cut(s)	855
BmgBI	CACGTC	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	102, 746
BmiI	GGNNCC	3 cut(s)	303, 487, 1039
BmsI	GCATC	2 cut(s)	262, 625
BpiI	GAAGAC	1 cut(s)	1197
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	316
BpuEI	CTTGAG	3 cut(s)	428, 605, 853
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	2 cut(s)	279, 1177
BsaJI	CCNNGG	3 cut(s)	117, 157, 1344
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	4 cut(s)	21, 670, 1018, 1329
BseDI	CCNNGG	3 cut(s)	117, 157, 1344
BseGI	GGATG	3 cut(s)	356, 366, 1267
BseMI	GCAATG	4 cut(s)	21, 670, 1018, 1329
BseMII	CTCAG	3 cut(s)	165, 294, 1107
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	118, 146, 515
BseYI	CCCAGC	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	1090
BshFI	GGCC	3 cut(s)	156, 198, 787
BsmAI	GTCTC	7 cut(s)	279, 528, 845, 951, 1177, 1289, 1345
BsnI	GGCC	3 cut(s)	156, 198, 787
Bso31I	GGTCTC	2 cut(s)	279, 1177
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	5 cut(s)	114, 335, 734, 1220, 1276
BspANI	GGCC	3 cut(s)	156, 198, 787
BspCNI	CTCAG	3 cut(s)	164, 293, 1108
BspFNI	CGCG	1 cut(s)	1090
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	303, 487, 1039
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	1264
BspT104I	TTCGAA	1 cut(s)	316
BspTNI	GGTCTC	2 cut(s)	279, 1177
BsrBI	CCGCTC	1 cut(s)	734
BsrDI	GCAATG	4 cut(s)	21, 670, 1018, 1329
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	3 cut(s)	117, 157, 1344
BssMI	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
BssT1I	CCWWGG	3 cut(s)	117, 157, 1344
Bst4CI	ACNGT	2 cut(s)	179, 904
Bst6I	CTCTTC	1 cut(s)	644
BstAPI	GCANNNNNTGC	2 cut(s)	131, 240
BstAUI	TGTACA	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	501, 659, 865
BstDEI	CTNAG	5 cut(s)	151, 280, 935, 1116, 1280
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	356, 366, 1267
BstFNI	CGCG	1 cut(s)	1090
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	6 cut(s)	36, 167, 417, 1259, 1295, 1312
BstMAI	GTCTC	7 cut(s)	279, 528, 845, 951, 1177, 1289, 1345
BstMBI	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 131, 231, 240, 1096
BstSFI	CTRYAG	3 cut(s)	132, 852, 1353
BstUI	CGCG	1 cut(s)	1090
BstV1I	GCAGC	3 cut(s)	118, 146, 515
BstV2I	GAAGAC	1 cut(s)	1197
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	156, 198, 787
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	809
BtsCI	GGATG	3 cut(s)	356, 366, 1267
Cac8I	GCNNGC	3 cut(s)	501, 659, 865
CaiI	CAGNNNCTG	4 cut(s)	131, 140, 455, 509
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	102, 746
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	8 cut(s)	87, 147, 158, 515, 767, 860, 1081, 1167
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	5 cut(s)	151, 280, 935, 1116, 1280
DpnI	GATC	6 cut(s)	35, 166, 416, 1258, 1294, 1311
DpnII	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
DriI	GACNNNNNGTC	1 cut(s)	855
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	644
Eam1105I	GACNNNNNGTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	3 cut(s)	117, 157, 1344
Eco31I	GGTCTC	2 cut(s)	279, 1177
Eco47I	GGWCC	2 cut(s)	102, 746
EcoT14I	CCWWGG	3 cut(s)	117, 157, 1344
EcoT22I	ATGCAT	1 cut(s)	1168
ErhI	CCWWGG	3 cut(s)	117, 157, 1344
FaeI	CATG	8 cut(s)	90, 150, 161, 518, 770, 863, 1084, 1170
FatI	CATG	8 cut(s)	86, 146, 157, 514, 766, 859, 1080, 1166
FbaI	TGATCA	1 cut(s)	1309
FblI	GTMKAC	1 cut(s)	1085
Fnu4HI	GCNGC	6 cut(s)	114, 132, 135, 504, 1221, 1277
FokI	GGATG	3 cut(s)	363, 373, 1274
Fsp4HI	GCNGC	6 cut(s)	114, 132, 135, 504, 1221, 1277
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	6 cut(s)	114, 132, 135, 504, 1221, 1277
GsaI	CCCAGC	1 cut(s)	883
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	156, 198, 787
HgaI	GACGC	1 cut(s)	627
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	8 cut(s)	90, 150, 161, 518, 770, 863, 1084, 1170
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	1363
HindII	GTYRAC	1 cut(s)	1363
HinfI	GANTC	7 cut(s)	43, 91, 313, 344, 465, 873, 1364
HphI	GGTGA	4 cut(s)	46, 789, 1013, 1183
Hpy166II	GTNNAC	5 cut(s)	102, 175, 1086, 1152, 1363
Hpy188I	TCNGA	4 cut(s)	705, 1261, 1292, 1373
Hpy8I	GTNNAC	5 cut(s)	102, 175, 1086, 1152, 1363
HpyAV	CCTTC	3 cut(s)	555, 623, 1167
HpyCH4III	ACNGT	2 cut(s)	179, 904
HpyCH4IV	ACGT	4 cut(s)	98, 171, 808, 1237
HpyCH4V	TGCA	8 cut(s)	26, 134, 449, 503, 979, 1125, 1166, 1322
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 131, 231, 240, 1096
HpyF3I	CTNAG	5 cut(s)	151, 280, 935, 1116, 1280
HpySE526I	ACGT	4 cut(s)	98, 171, 808, 1237
Hsp92II	CATG	8 cut(s)	90, 150, 161, 518, 770, 863, 1084, 1170
HspAI	GCGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	1309
Kzo9I	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
LmnI	GCTCC	5 cut(s)	248, 301, 479, 485, 654
Lsp1109I	GCAGC	3 cut(s)	118, 146, 515
LweI	GCATC	2 cut(s)	262, 625
MaeII	ACGT	4 cut(s)	98, 171, 808, 1237
MaeIII	GTNAC	5 cut(s)	215, 426, 451, 556, 694
MalI	GATC	6 cut(s)	35, 166, 416, 1258, 1294, 1311
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
MboII	GAAGA	7 cut(s)	242, 424, 661, 833, 1202, 1237, 1342
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	4 cut(s)	494, 532, 577, 607
MluI	ACGCGT	1 cut(s)	1088
MlyI	GAGTC	3 cut(s)	100, 353, 1358
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	115, 148, 319, 645, 1001
Mph1103I	ATGCAT	1 cut(s)	1168
MseI	TTAA	4 cut(s)	375, 606, 675, 987
MslI	CAYNNNNRTG	1 cut(s)	771
MunI	CAATTG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	1090
MwoI	GCNNNNNNNGC	5 cut(s)	122, 131, 231, 240, 1096
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
NlaIII	CATG	8 cut(s)	90, 150, 161, 518, 770, 863, 1084, 1170
NlaIV	GGNNCC	3 cut(s)	303, 487, 1039
NmuCI	GTSAC	3 cut(s)	215, 556, 694
NsiI	ATGCAT	1 cut(s)	1168
NspV	TTCGAA	1 cut(s)	316
PagI	TCATGA	1 cut(s)	766
PfeI	GAWTC	4 cut(s)	43, 313, 465, 873
PkrI	GCNGC	6 cut(s)	115, 133, 136, 505, 1222, 1278
PleI	GAGTC	3 cut(s)	99, 352, 1358
PpsI	GAGTC	3 cut(s)	99, 352, 1358
Ppu21I	YACGTR	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	879
PspN4I	GGNNCC	3 cut(s)	303, 487, 1039
PspPI	GGNCC	2 cut(s)	102, 746
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	4 cut(s)	131, 140, 455, 509
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	375, 606, 675, 987
SatI	GCNGC	6 cut(s)	114, 132, 135, 504, 1221, 1277
Sau3AI	GATC	6 cut(s)	33, 164, 414, 1256, 1292, 1309
Sau96I	GGNCC	2 cut(s)	102, 746
SchI	GAGTC	3 cut(s)	100, 353, 1358
SfaNI	GCATC	2 cut(s)	262, 625
SfcI	CTRYAG	3 cut(s)	132, 852, 1353
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	2 cut(s)	102, 746
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	3 cut(s)	407, 620, 868
SmoI	CTYRAG	3 cut(s)	407, 620, 868
Sse9I	AATT	4 cut(s)	494, 532, 577, 607
SsiI	CCGC	5 cut(s)	114, 335, 734, 1220, 1276
SspI	AATATT	1 cut(s)	1020
StyI	CCWWGG	3 cut(s)	117, 157, 1344
TaaI	ACNGT	2 cut(s)	179, 904
TaiI	ACGT	4 cut(s)	101, 174, 811, 1240
TaqI	TCGA	4 cut(s)	32, 270, 316, 1101
TasI	AATT	4 cut(s)	494, 532, 577, 607
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	3 cut(s)	116, 1223, 1279
TfiI	GAWTC	4 cut(s)	43, 313, 465, 873
Tru1I	TTAA	4 cut(s)	375, 606, 675, 987
Tru9I	TTAA	4 cut(s)	375, 606, 675, 987
TseFI	GTSAC	3 cut(s)	215, 556, 694
TseI	GCWGC	3 cut(s)	131, 134, 503
Tsp45I	GTSAC	3 cut(s)	215, 556, 694
TspGWI	ACGGA	3 cut(s)	235, 393, 1013
VpaK11BI	GGWCC	2 cut(s)	102, 746
XapI	RAATTY	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.