Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001939.1

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

46332 .. 48195

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001939.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgagaggacatgagtcgaacgttaaagtgcaattatatgaggaaattgatgtaggtaaagctacaccaaaaagaacgagcctcaatgaattatttgtatatattgttggttgcagtggagatccatatttcttagagcccttttggatgcaacatgcttctgaaagtgcagttctagtagcagggtggcatcgaatgggctatactttccctgatcaggcttacatctcacaagagcttgagaggctcatccgcaaagttcacgacattgctggtaatgcagtcactcaaggaaggtacattgtaattggtgctggctcaacccatctcctcaacgctgcagttaaagcgctctctttctcatcaaccagtagtttcaactcatcatcaccctcacctgctagtgttgttgtttcaattcctttttacgcgctttatgaaacgcaaacggaatacttccgatcattggattacaagttcgaaggggatggttcgttgctgccaaacatcacagatggaactaagagggttattgagtttgtaaccgcaccaaacaatcctgatgggaagctaaacaaagcaaattttcaaggaccaaattccgcagcaatctatgatcgtgtttattattggccacatttcacaccaattccaactccagcaaatgacgatgtcatggtgttttcaatttccaagctcactggccatgctggtacaagattagggtgggcagtgataaaggatgaggcagtgtaccaaagaatgttgaatcacactgtgataagtaacttgggtatttctcgcgatactcagctaagagctttcaagcttttgaatgcagtcgtagaaggtggagggaaagaaattttcgaattcggatacaccacaatgaggaaacgttgggaaactttgagtaacgccctgtctgtatcaaaccgcttttctctgcagaaagttgaacctctctactgcacttttttcaaaaaaattagaagaccatctccagcctatgcgtgggtgaagtgcgagagggaagaggataaagattgttacgcagtcctcaaagacgaagctaatgttaatggccgtagaggaagtgtctttggttctgaagatcgatatgtacgtctcagcctcataagaagccaagatgatttcgatatattgcttcaccgactgaaacagttagtctccaaggaagatgcacagacccgtatttatatgaaaaatgtgacaaaccaatttcttagacgcaaaactcatgtcaatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

424

Amino Acids

48.06

Weight (kDa)

9.0

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AccII	CGCG	2 cut(s)	431, 804
AciI	CCGC	4 cut(s)	253, 546, 603, 937
AclI	AACGTT	2 cut(s)	21, 898
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	3 cut(s)	632, 703, 1084
AcsI	RAATTY	4 cut(s)	583, 598, 864, 872
AcuI	CTGAAG	1 cut(s)	1131
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	4 cut(s)	299, 715, 755, 1125
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	4 cut(s)	217, 466, 891, 1014
AgsI	TTSAA	9 cut(s)	379, 417, 590, 687, 769, 826, 835, 959, 982
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	9 cut(s)	62, 238, 571, 697, 814, 821, 829, 1073, 1272
AluI	AGCT	9 cut(s)	62, 238, 571, 697, 814, 821, 829, 1073, 1272
Alw26I	GTCTC	2 cut(s)	1133, 1195
AlwI	GGATC	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	3 cut(s)	632, 703, 1084
ApeKI	GCWGC	3 cut(s)	338, 499, 605
ApoI	RAATTY	4 cut(s)	583, 598, 864, 872
ArsI	GACNNNNNNTTYG	1 cut(s)	1248
AspLEI	GCGC	2 cut(s)	352, 433
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	381, 387, 1030, 1163
AsuII	TTCGAA	2 cut(s)	480, 870
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	2 cut(s)	634, 705
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	1000
BbvI	GCAGC	3 cut(s)	325, 486, 617
BccI	CCATC	5 cut(s)	333, 482, 509, 557, 1006
BceAI	ACGGC	1 cut(s)	1071
BciVI	GTATCC	1 cut(s)	872
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	1133, 1195
BfaI	CTAG	3 cut(s)	176, 402, 1273
BfmI	CTRYAG	2 cut(s)	339, 947
BfoI	RGCGCY	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	872
BisI	GCNGC	3 cut(s)	339, 500, 606
BlsI	GCNGC	3 cut(s)	340, 501, 607
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmsI	GCATC	3 cut(s)	138, 199, 1192
BoxI	GACNNNNGTC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	1000
BpmI	CTGGAG	2 cut(s)	642, 987
Bpu14I	TTCGAA	2 cut(s)	480, 870
BpuEI	CTTGAG	2 cut(s)	260, 273
Bsa29I	ATCGAT	1 cut(s)	1117
BsaJI	CCNNGG	1 cut(s)	1194
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 466, 891, 1014
Bse1I	ACTGG	2 cut(s)	369, 706
Bse3DI	GCAATG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	4 cut(s)	153, 249, 493, 748
BseLI	CCNNNNNNNGG	4 cut(s)	217, 466, 891, 1014
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	824, 1144
BseNI	ACTGG	2 cut(s)	369, 706
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	325, 486, 617
BsgI	GTGCAG	2 cut(s)	189, 955
Bsh1236I	CGCG	2 cut(s)	431, 804
BshFI	GGCC	3 cut(s)	634, 705, 1086
BshVI	ATCGAT	1 cut(s)	1117
BslI	CCNNNNNNNGG	4 cut(s)	217, 466, 891, 1014
BsmAI	GTCTC	2 cut(s)	1133, 1195
BsmBI	CGTCTC	1 cut(s)	1133
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	3 cut(s)	634, 705, 1086
Bsp119I	TTCGAA	2 cut(s)	480, 870
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	121, 214, 461, 616, 1114
Bsp68I	TCGCGA	1 cut(s)	804
BspACI	CCGC	4 cut(s)	253, 546, 603, 937
BspANI	GGCC	3 cut(s)	634, 705, 1086
BspCNI	CTCAG	2 cut(s)	823, 1143
BspDI	ATCGAT	1 cut(s)	1117
BspFNI	CGCG	2 cut(s)	431, 804
BspMAI	CTGCAG	2 cut(s)	343, 951
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	2 cut(s)	480, 870
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	369, 706
BssECI	CCNNGG	1 cut(s)	1194
BssMI	GATC	5 cut(s)	121, 214, 461, 616, 1114
BssT1I	CCWWGG	1 cut(s)	1194
Bst4CI	ACNGT	2 cut(s)	778, 1185
Bst6I	CTCTTC	1 cut(s)	1029
BstBI	TTCGAA	2 cut(s)	480, 870
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	6 cut(s)	133, 522, 810, 815, 1130, 1247
BstF5I	GGATG	4 cut(s)	153, 249, 493, 748
BstFNI	CGCG	2 cut(s)	431, 804
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 433
BstKTI	GATC	5 cut(s)	124, 217, 464, 619, 1117
BstMAI	GTCTC	2 cut(s)	1133, 1195
BstMBI	GATC	5 cut(s)	121, 214, 461, 616, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 278, 347
BstNSI	RCATGY	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	339, 947
BstUI	CGCG	2 cut(s)	431, 804
BstV1I	GCAGC	3 cut(s)	325, 486, 617
BstV2I	GAAGAC	1 cut(s)	1000
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	1117
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	3 cut(s)	634, 705, 1086
BsuTUI	ATCGAT	1 cut(s)	1117
BtsCI	GGATG	4 cut(s)	153, 249, 493, 748
BtsI	GCAGTG	3 cut(s)	121, 738, 756
BtsIMutI	CAGTG	5 cut(s)	121, 699, 738, 756, 774
BtuMI	TCGCGA	1 cut(s)	804
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	2 cut(s)	352, 433
Cfr13I	GGNCC	1 cut(s)	593
ClaI	ATCGAT	1 cut(s)	1117
CseI	GACGC	1 cut(s)	1260
Csp6I	GTAC	4 cut(s)	298, 714, 754, 1124
CviAII	CATG	5 cut(s)	11, 155, 676, 707, 1262
CviQI	GTAC	4 cut(s)	298, 714, 754, 1124
DdeI	CTNAG	6 cut(s)	133, 522, 810, 815, 1130, 1247
DpnI	GATC	5 cut(s)	123, 216, 463, 618, 1116
DpnII	GATC	5 cut(s)	121, 214, 461, 616, 1114
DraIII	CACNNNGTG	1 cut(s)	778
EaeI	YGGCCR	3 cut(s)	632, 703, 1084
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	593
Eco47III	AGCGCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	1131
EcoRI	GAATTC	1 cut(s)	872
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	1194
Esp3I	CGTCTC	1 cut(s)	1133
FaeI	CATG	5 cut(s)	14, 158, 679, 710, 1265
FatI	CATG	5 cut(s)	10, 154, 675, 706, 1261
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	339, 500, 606
FokI	GGATG	4 cut(s)	160, 236, 500, 755
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	339, 500, 606
FspBI	CTAG	3 cut(s)	176, 402, 1273
GlaI	GCGC	2 cut(s)	351, 432
GluI	GCNGC	3 cut(s)	339, 500, 606
GsuI	CTGGAG	2 cut(s)	642, 987
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	634, 705, 1086
HgaI	GACGC	1 cut(s)	1260
HhaI	GCGC	2 cut(s)	352, 433
Hin1II	CATG	5 cut(s)	14, 158, 679, 710, 1265
Hin6I	GCGC	2 cut(s)	350, 431
HinP1I	GCGC	2 cut(s)	350, 431
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	2 cut(s)	14, 769
HphI	GGTGA	4 cut(s)	381, 387, 1030, 1163
Hpy166II	GTNNAC	2 cut(s)	262, 754
Hpy188I	TCNGA	4 cut(s)	163, 461, 878, 1111
Hpy188III	TCNNGA	3 cut(s)	263, 560, 803
Hpy8I	GTNNAC	2 cut(s)	262, 754
HpyAV	CCTTC	3 cut(s)	288, 476, 842
HpyCH4III	ACNGT	2 cut(s)	778, 1185
HpyCH4IV	ACGT	3 cut(s)	21, 898, 1126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 278, 347
HpyF3I	CTNAG	6 cut(s)	133, 522, 810, 815, 1130, 1247
HpySE526I	ACGT	3 cut(s)	21, 898, 1126
Hsp92II	CATG	5 cut(s)	14, 158, 679, 710, 1265
HspAI	GCGC	2 cut(s)	350, 431
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	121, 214, 461, 616, 1114
Lsp1109I	GCAGC	3 cut(s)	325, 486, 617
LweI	GCATC	3 cut(s)	138, 199, 1192
MaeI	CTAG	3 cut(s)	176, 402, 1273
MaeII	ACGT	3 cut(s)	21, 898, 1126
MaeIII	GTNAC	6 cut(s)	283, 541, 785, 914, 1049, 1231
MalI	GATC	5 cut(s)	123, 216, 463, 618, 1116
MboI	GATC	5 cut(s)	121, 214, 461, 616, 1114
MboII	GAAGA	4 cut(s)	1005, 1046, 1124, 1211
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	2 cut(s)	634, 705
MluNI	TGGCCA	2 cut(s)	634, 705
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	677
Mox20I	TGGCCA	2 cut(s)	634, 705
MscI	TGGCCA	2 cut(s)	634, 705
MseI	TTAA	3 cut(s)	24, 345, 1080
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	2 cut(s)	634, 705
Mva1269I	GAATGC	1 cut(s)	841
MvnI	CGCG	2 cut(s)	431, 804
MwoI	GCNNNNNNNGC	3 cut(s)	244, 278, 347
NdeII	GATC	5 cut(s)	121, 214, 461, 616, 1114
NlaIII	CATG	5 cut(s)	14, 158, 679, 710, 1265
NmuCI	GTSAC	2 cut(s)	283, 1231
NruI	TCGCGA	1 cut(s)	804
NspI	RCATGY	1 cut(s)	158
NspV	TTCGAA	2 cut(s)	480, 870
PaqCI	CACCTGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
PctI	GAATGC	1 cut(s)	841
PfeI	GAWTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	340, 501, 607
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	13
Psp1406I	AACGTT	2 cut(s)	21, 898
PspPI	GGNCC	1 cut(s)	593
PstI	CTGCAG	2 cut(s)	343, 951
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	671
RruI	TCGCGA	1 cut(s)	804
RsaI	GTAC	4 cut(s)	299, 715, 755, 1125
RsaNI	GTAC	4 cut(s)	298, 714, 754, 1124
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	3 cut(s)	24, 345, 1080
SatI	GCNGC	3 cut(s)	339, 500, 606
Sau3AI	GATC	5 cut(s)	121, 214, 461, 616, 1114
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	3 cut(s)	138, 199, 1192
SfcI	CTRYAG	2 cut(s)	339, 947
SfuI	TTCGAA	2 cut(s)	480, 870
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	239, 288
SmoI	CTYRAG	2 cut(s)	239, 288
SsiI	CCGC	4 cut(s)	253, 546, 603, 937
SspMI	CTAG	3 cut(s)	176, 402, 1273
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	2 cut(s)	778, 1185
TaiI	ACGT	3 cut(s)	24, 901, 1129
TaqI	TCGA	6 cut(s)	17, 193, 480, 870, 1117, 1158
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	3 cut(s)	24, 345, 1080
Tru9I	TTAA	3 cut(s)	24, 345, 1080
TscAI	CASTG	5 cut(s)	121, 706, 738, 756, 781
TseFI	GTSAC	2 cut(s)	283, 1231
TseI	GCWGC	3 cut(s)	338, 499, 605
Tsp45I	GTSAC	2 cut(s)	283, 1231
TspDTI	ATGAA	3 cut(s)	102, 453, 1238
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	5 cut(s)	121, 706, 738, 756, 781
Tth111I	GACNNNGTC	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	4 cut(s)	583, 598, 864, 872
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1011
XspI	CTAG	3 cut(s)	176, 402, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.