FvH4_2g13010

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
11403713 .. 11408402
4690 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13010.t4

Sequence Viewer

Length: 1458 bp
ATGGCTAAGCTACAACAAAGCTCCTACGTCCTGTGCCTGGCATTTTCTGTAGCTGTCAATCTGTATTTGATCTTAAACCTCTATGGACATGGAGCTGGAGGTCAGTGGGAGCTCAGTTGGAGCAGAAGGGCAGCAGAAGAAGCCGAACACGTCGCCGCCGTGCCTTGCTCGGGGCATGGCAGAGCCTACTTGGATGGTTTGGTTCTTGATGATGGCAAGCAACCTGGTTGTGAATGCAATTCTTGCTTTGGAGGCTCAGATTGTTCTCAGTTCTTAACTGATTGTGAATCAAATGCTGACGGTGGGGATCCATATTTCTTAGAGCCCTTTTGGATGGAACATGCTTCAGAAAGTGCAATTCTAGTAGCAGGGTGGCATCGAATGGGCTATTCTTTCTCTGATAAATCTTACATCTCACAAGAGCTTGAGAGGCTCATCCGCAAAGTACACGACGTTGCTGGTAATGCAGTCACTCAAGGAAGGTACATTGTAATCGGTGCTGGCTCAACCCATCTCATCAACGCCGCAGTTCAAGCGCTCTCTTCCTCATCGACCGATAATTTCAACTCATCATCATCCTCACCAGCTAGCATTGTTGTTACAATTCCTTATTACGCGCTTTATGAAACGCAAACAGAATACTTCCAATCAGTAAATTACAAGTTCGAAGGGGATGGTTCGTTGCTGAACTTGTCAAGTGGAACTAAGAGGGTTATTGAGTTTGTAACGGCACCAAACAATCCTGATGGGAAGCTAAACAAAGCAAATTTTCAAGGACCAAACTCCGCAGCAATCTATGATCGTGTTTATTATTGGCCACATTTCACACCAATTCCAACTCCAGCAAATGACGATGTCATGGTGTTTTCAATTTCTAAGCTCACTGGCCATGCTGGTACTAGATTAGGGTGGGCAGTGATAAAGGATGAGGCAGTGTACCAAAGAATATTGCAGCATACTCTGATAAGTAACTTGGGTATTTCTCGGGATGCTCAGCTAAGAGCAATGAAGCTGTTGAATGTAGTCGTAGAAGGTGGAGGGAAAGAAATTTTCGAATTCGGATACACCACAATGAGGAAACGGTGGGAAAAACTGAAAAACACCCTGTCTTTGTCAAACCGATTTTCTCTGCAGAAAGATGAACCTCTCTTCTGCACTTTTTTCCAGAAACGTAGAGGACCATCTCCAGCCTATGCATGGGTGAAGTGCGAGAGAGAAGAAGATGTAGATTGCTACAAAGTTCTCCAGGAAGAAGCTAATGTTTACGGCCGCAGAGGAAGTGTGTTTGGTGCTGAAGATCGATATGTACGTCTCGCCCTCATAAGGAGCCAAGATGATTTCGATATATTGCTTCACCGATTGAACCAGTTGGTCTCCAAGGAAGATGATTCACAGCCCCAGACTTCCATTAACAATGTGACAACCCATGAATTTCTCAGACGCAAGTCACGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

54.25

Weight (kDa)

6.21

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 39 - 95 1.3e-28 Alliinase EGF-like domain
Alliinase_C PF04864 98 - 299 1.3e-75 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AccII CGCG 1 cut(s) 617
AciI CCGC 5 cut(s) 156, 439, 525, 786, 1270
AclWI GGATC 2 cut(s) 302, 315
AcoI YGGCCR 3 cut(s) 815, 886, 1267
AcsI RAATTY 4 cut(s) 766, 1047, 1055, 1430
AcuI CTGAAG 2 cut(s) 330, 1314
AfaI GTAC 5 cut(s) 447, 485, 898, 938, 1308
AfeI AGCGCT 1 cut(s) 537
AfiI CCNNNNNNNGG 5 cut(s) 37, 170, 1074, 1197, 1323
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 6 cut(s) 533, 565, 773, 870, 1018, 1363
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 3 cut(s) 36, 223, 1245
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 1316, 1378
AlwI GGATC 2 cut(s) 302, 315
Ama87I CYCGRG 2 cut(s) 169, 984
Aor51HI AGCGCT 1 cut(s) 537
AoxI GGCC 3 cut(s) 815, 886, 1267
ApeKI GCWGC 3 cut(s) 131, 788, 952
ApoI RAATTY 4 cut(s) 766, 1047, 1055, 1430
AspLEI GCGC 2 cut(s) 538, 619
AspS9I GGNCC 2 cut(s) 776, 1178
AsuHPI GGTGA 3 cut(s) 573, 1213, 1346
AsuII TTCGAA 2 cut(s) 666, 1053
AsuNHI GCTAGC 1 cut(s) 587
AvaI CYCGRG 2 cut(s) 169, 984
AvaII GGWCC 2 cut(s) 776, 1178
BalI TGGCCA 2 cut(s) 817, 888
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 2 cut(s) 114, 327
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 143, 800, 964
BccI CCATC 7 cut(s) 188, 206, 328, 519, 668, 740, 1189
BceAI ACGGC 3 cut(s) 143, 744, 1282
BciT130I CCWGG 3 cut(s) 38, 225, 1247
BciVI GTATCC 1 cut(s) 1055
BcoDI GTCTC 2 cut(s) 1316, 1378
BfaI CTAG 3 cut(s) 362, 588, 900
BfmI CTRYAG 2 cut(s) 48, 1130
BfoI RGCGCY 1 cut(s) 539
BfuI GTATCC 1 cut(s) 1055
BisI GCNGC 6 cut(s) 132, 156, 525, 789, 953, 1270
BlpI GCTNAGC 2 cut(s) 6, 993
BlsI GCNGC 6 cut(s) 133, 157, 526, 790, 954, 1271
Bme1390I CCNGG 3 cut(s) 38, 225, 1247
Bme18I GGWCC 2 cut(s) 776, 1178
BmeT110I CYCGRG 2 cut(s) 169, 984
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 776, 1178
BmiI GGNNCC 3 cut(s) 309, 732, 1328
BmrFI CCNGG 3 cut(s) 38, 225, 1247
BmsI GCATC 2 cut(s) 385, 979
BmtI GCTAGC 1 cut(s) 591
BoxI GACNNNNGTC 1 cut(s) 1444
BpmI CTGGAG 4 cut(s) 117, 825, 1170, 1229
Bpu1102I GCTNAGC 2 cut(s) 6, 993
Bpu14I TTCGAA 2 cut(s) 666, 1053
BpuEI CTTGAG 2 cut(s) 446, 459
Bsa29I ATCGAT 1 cut(s) 1300
BsaAI YACGTR 1 cut(s) 1451
BsaI GGTCTC 1 cut(s) 1378
BsaJI CCNNGG 1 cut(s) 1377
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 170, 1074, 1197, 1323
Bse1I ACTGG 2 cut(s) 889, 1366
Bse3DI GCAATG 1 cut(s) 1011
BseBI CCWGG 3 cut(s) 38, 225, 1247
BseCI ATCGAT 1 cut(s) 1300
BseDI CCNNGG 1 cut(s) 1377
BseGI GGATG 7 cut(s) 199, 339, 435, 575, 679, 931, 994
BseLI CCNNNNNNNGG 5 cut(s) 37, 170, 1074, 1197, 1323
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 5 cut(s) 127, 270, 281, 1007, 1450
BseNI ACTGG 2 cut(s) 889, 1366
BseX3I CGGCCG 1 cut(s) 1267
BseXI GCAGC 3 cut(s) 143, 800, 964
BsgI GTGCAG 1 cut(s) 1138
Bsh1236I CGCG 1 cut(s) 617
Bsh1285I CGRYCG 2 cut(s) 555, 1270
BshFI GGCC 3 cut(s) 817, 888, 1269
BshNI GGYRCC 1 cut(s) 730
BshVI ATCGAT 1 cut(s) 1300
BsiEI CGRYCG 2 cut(s) 555, 1270
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 2 cut(s) 169, 984
BslI CCNNNNNNNGG 5 cut(s) 37, 170, 1074, 1197, 1323
BsmAI GTCTC 2 cut(s) 1316, 1378
BsmBI CGTCTC 1 cut(s) 1316
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 3 cut(s) 817, 888, 1269
Bso31I GGTCTC 1 cut(s) 1378
BsoBI CYCGRG 2 cut(s) 169, 984
Bsp119I TTCGAA 2 cut(s) 666, 1053
Bsp1286I GDGCHC 2 cut(s) 114, 327
Bsp143I GATC 4 cut(s) 69, 307, 799, 1297
Bsp1720I GCTNAGC 2 cut(s) 6, 993
BspACI CCGC 5 cut(s) 156, 439, 525, 786, 1270
BspANI GGCC 3 cut(s) 817, 888, 1269
BspCNI CTCAG 5 cut(s) 126, 269, 280, 1006, 1449
BspDI ATCGAT 1 cut(s) 1300
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 3 cut(s) 309, 732, 1328
BspMAI CTGCAG 1 cut(s) 1134
BspOI GCTAGC 1 cut(s) 591
BspPI GGATC 2 cut(s) 302, 315
BspT104I TTCGAA 2 cut(s) 666, 1053
BspT107I GGYRCC 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 1378
BsrDI GCAATG 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 889, 1366
BssECI CCNNGG 1 cut(s) 1377
BssMI GATC 4 cut(s) 69, 307, 799, 1297
BssT1I CCWWGG 1 cut(s) 1377
Bst2UI CCWGG 3 cut(s) 38, 225, 1247
Bst4CI ACNGT 2 cut(s) 302, 1083
Bst6I CTCTTC 2 cut(s) 547, 1154
BstAPI GCANNNNNTGC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 1451
BstBI TTCGAA 2 cut(s) 666, 1053
BstC8I GCNNGC 3 cut(s) 218, 502, 589
BstF5I GGATG 7 cut(s) 199, 339, 435, 575, 679, 931, 994
BstFNI CGCG 1 cut(s) 617
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 2 cut(s) 538, 619
BstKTI GATC 4 cut(s) 72, 310, 802, 1300
BstMAI GTCTC 2 cut(s) 1316, 1378
BstMBI GATC 4 cut(s) 69, 307, 799, 1297
BstMCI CGRYCG 2 cut(s) 555, 1270
BstMWI GCNNNNNNNGC 6 cut(s) 140, 243, 252, 430, 464, 533
BstNI CCWGG 3 cut(s) 38, 225, 1247
BstNSI RCATGY 1 cut(s) 344
BstPAI GACNNNNGTC 1 cut(s) 1444
BstSCI CCNGG 3 cut(s) 36, 223, 1245
BstSFI CTRYAG 2 cut(s) 48, 1130
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 3 cut(s) 143, 800, 964
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BstZI CGGCCG 1 cut(s) 1267
Bsu15I ATCGAT 1 cut(s) 1300
BsuI GTATCC 1 cut(s) 1055
BsuRI GGCC 3 cut(s) 817, 888, 1269
BsuTUI ATCGAT 1 cut(s) 1300
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 7 cut(s) 199, 339, 435, 575, 679, 931, 994
BtsI GCAGTG 2 cut(s) 921, 939
BtsIMutI CAGTG 4 cut(s) 110, 882, 921, 939
Cac8I GCNNGC 3 cut(s) 218, 502, 589
CfoI GCGC 2 cut(s) 538, 619
Cfr13I GGNCC 2 cut(s) 776, 1178
ClaI ATCGAT 1 cut(s) 1300
CseI GACGC 1 cut(s) 1449
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 5 cut(s) 446, 484, 897, 937, 1307
CviAII CATG 7 cut(s) 89, 176, 341, 859, 890, 1197, 1427
CviQI GTAC 5 cut(s) 446, 484, 897, 937, 1307
DpnI GATC 4 cut(s) 71, 309, 801, 1299
DpnII GATC 4 cut(s) 69, 307, 799, 1297
EaeI YGGCCR 3 cut(s) 815, 886, 1267
EagI CGGCCG 1 cut(s) 1267
Eam1104I CTCTTC 2 cut(s) 547, 1154
EarI CTCTTC 2 cut(s) 547, 1154
Ecl136II GAGCTC 1 cut(s) 112
EclXI CGGCCG 1 cut(s) 1267
Eco130I CCWWGG 1 cut(s) 1377
Eco24I GRGCYC 2 cut(s) 114, 327
Eco31I GGTCTC 1 cut(s) 1378
Eco47I GGWCC 2 cut(s) 776, 1178
Eco47III AGCGCT 1 cut(s) 537
Eco52I CGGCCG 1 cut(s) 1267
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 330, 1314
Eco88I CYCGRG 2 cut(s) 169, 984
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 3 cut(s) 36, 223, 1245
EcoT14I CCWWGG 1 cut(s) 1377
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 2 cut(s) 114, 327
ErhI CCWWGG 1 cut(s) 1377
Esp3I CGTCTC 1 cut(s) 1316
FaeI CATG 7 cut(s) 92, 179, 344, 862, 893, 1200, 1430
FatI CATG 7 cut(s) 88, 175, 340, 858, 889, 1196, 1426
Fnu4HI GCNGC 6 cut(s) 132, 156, 525, 789, 953, 1270
FokI GGATG 7 cut(s) 206, 346, 422, 562, 686, 938, 1001
FriOI GRGCYC 2 cut(s) 114, 327
Fsp4HI GCNGC 6 cut(s) 132, 156, 525, 789, 953, 1270
FspBI CTAG 3 cut(s) 362, 588, 900
GlaI GCGC 2 cut(s) 537, 618
GluI GCNGC 6 cut(s) 132, 156, 525, 789, 953, 1270
GsuI CTGGAG 4 cut(s) 117, 825, 1170, 1229
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 3 cut(s) 817, 888, 1269
HgaI GACGC 1 cut(s) 1449
HhaI GCGC 2 cut(s) 538, 619
Hin1II CATG 7 cut(s) 92, 179, 344, 862, 893, 1200, 1430
Hin6I GCGC 2 cut(s) 536, 617
HinP1I GCGC 2 cut(s) 536, 617
HinfI GANTC 2 cut(s) 287, 1388
HphI GGTGA 3 cut(s) 573, 1213, 1346
Hpy166II GTNNAC 3 cut(s) 448, 937, 1264
Hpy188I TCNGA 6 cut(s) 259, 349, 400, 963, 1061, 1439
Hpy188III TCNNGA 4 cut(s) 206, 743, 986, 1165
Hpy8I GTNNAC 3 cut(s) 448, 937, 1264
Hpy99I CGWCG 2 cut(s) 155, 455
HpyAV CCTTC 4 cut(s) 120, 474, 662, 1025
HpyCH4III ACNGT 2 cut(s) 302, 1083
HpyCH4IV ACGT 6 cut(s) 27, 150, 453, 1171, 1309, 1450
HpyCH4V TGCA 7 cut(s) 237, 356, 467, 952, 1132, 1155, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 243, 252, 430, 464, 533
HpySE526I ACGT 6 cut(s) 27, 150, 453, 1171, 1309, 1450
Hsp92II CATG 7 cut(s) 92, 179, 344, 862, 893, 1200, 1430
HspAI GCGC 2 cut(s) 536, 617
Kzo9I GATC 4 cut(s) 69, 307, 799, 1297
LmnI GCTCC 5 cut(s) 26, 92, 109, 120, 1326
Lsp1109I GCAGC 3 cut(s) 143, 800, 964
LweI GCATC 2 cut(s) 385, 979
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 3 cut(s) 362, 588, 900
MaeII ACGT 6 cut(s) 27, 150, 453, 1171, 1309, 1450
MaeIII GTNAC 6 cut(s) 469, 598, 724, 968, 1417, 1446
MalI GATC 4 cut(s) 71, 309, 801, 1299
MboI GATC 4 cut(s) 69, 307, 799, 1297
MboII GAAGA 8 cut(s) 149, 534, 1141, 1229, 1232, 1262, 1307, 1394
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 114, 327
MlsI TGGCCA 2 cut(s) 817, 888
MluNI TGGCCA 2 cut(s) 817, 888
MmeI TCCRAC 2 cut(s) 98, 860
Mox20I TGGCCA 2 cut(s) 817, 888
Mph1103I ATGCAT 1 cut(s) 1198
MscI TGGCCA 2 cut(s) 817, 888
MseI TTAA 3 cut(s) 74, 275, 1410
MslI CAYNNNNRTG 1 cut(s) 1070
Msp20I TGGCCA 2 cut(s) 817, 888
MspR9I CCNGG 3 cut(s) 38, 225, 1247
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 3 cut(s) 38, 225, 1247
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 6 cut(s) 140, 243, 252, 430, 464, 533
NdeII GATC 4 cut(s) 69, 307, 799, 1297
NheI GCTAGC 1 cut(s) 587
NlaIII CATG 7 cut(s) 92, 179, 344, 862, 893, 1200, 1430
NlaIV GGNNCC 3 cut(s) 309, 732, 1328
NmuCI GTSAC 3 cut(s) 469, 1417, 1446
NsiI ATGCAT 1 cut(s) 1198
NspI RCATGY 1 cut(s) 344
NspV TTCGAA 2 cut(s) 666, 1053
PcsI WCGNNNNNNNCGW 3 cut(s) 156, 1306, 1447
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 287, 1388
PflFI GACNNNGTC 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 1245
PkrI GCNGC 6 cut(s) 133, 157, 526, 790, 954, 1271
Ppu21I YACGTR 1 cut(s) 1451
PshAI GACNNNNGTC 1 cut(s) 1444
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 36, 223, 1245
PspGI CCWGG 3 cut(s) 36, 223, 1245
PspN4I GGNNCC 3 cut(s) 309, 732, 1328
PspPI GGNCC 2 cut(s) 776, 1178
PstI CTGCAG 1 cut(s) 1134
PsuI RGATCY 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 854
RsaI GTAC 5 cut(s) 447, 485, 898, 938, 1308
RsaNI GTAC 5 cut(s) 446, 484, 897, 937, 1307
RseI CAYNNNNRTG 1 cut(s) 1070
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 74, 275, 1410
SatI GCNGC 6 cut(s) 132, 156, 525, 789, 953, 1270
Sau3AI GATC 4 cut(s) 69, 307, 799, 1297
Sau96I GGNCC 2 cut(s) 776, 1178
ScrFI CCNGG 3 cut(s) 38, 225, 1247
SduI GDGCHC 2 cut(s) 114, 327
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 2 cut(s) 385, 979
SfcI CTRYAG 2 cut(s) 48, 1130
SfuI TTCGAA 2 cut(s) 666, 1053
SinI GGWCC 2 cut(s) 776, 1178
SmiMI CAYNNNNRTG 1 cut(s) 1070
SmlI CTYRAG 2 cut(s) 425, 474
SmoI CTYRAG 2 cut(s) 425, 474
SsiI CCGC 5 cut(s) 156, 439, 525, 786, 1270
SspI AATATT 1 cut(s) 948
SspMI CTAG 3 cut(s) 362, 588, 900
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 3 cut(s) 36, 223, 1245
StyI CCWWGG 1 cut(s) 1377
TaaI ACNGT 2 cut(s) 302, 1083
TaiI ACGT 6 cut(s) 30, 153, 456, 1174, 1312, 1453
TaqI TCGA 6 cut(s) 379, 551, 666, 1053, 1300, 1341
TaqII GACCGA 1 cut(s) 569
TatI WGTACW 1 cut(s) 445
TauI GCSGC 3 cut(s) 158, 527, 1272
TfiI GAWTC 2 cut(s) 287, 1388
Tru1I TTAA 3 cut(s) 74, 275, 1410
Tru9I TTAA 3 cut(s) 74, 275, 1410
TscAI CASTG 4 cut(s) 110, 889, 921, 939
TseFI GTSAC 3 cut(s) 469, 1417, 1446
TseI GCWGC 3 cut(s) 131, 788, 952
Tsp45I GTSAC 3 cut(s) 469, 1417, 1446
TspDTI ATGAA 4 cut(s) 639, 1022, 1155, 1443
TspRI CASTG 4 cut(s) 110, 889, 921, 939
Tth111I GACNNNGTC 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 776, 1178
XapI RAATTY 4 cut(s) 766, 1047, 1055, 1430
XceI RCATGY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 1194
XspI CTAG 3 cut(s) 362, 588, 900
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.