Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4234053 .. 4239522

Gene Structure 5470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCTAAGTTACAAAGCTCCTACTTTGTGTGCTTTGCATTTTCTATATTTGTTAATCTATTATTAGTCTTGAAACTCTATGTGGGTGGAGAGTGGGAGCTGAGTTGGAGCAGAGGAGCAGCAGAAGAAGCTGAGCACGTGGCAGCCGTCTCTTGCTCAGGGCATGGAAGAGCCTACTTGGATGGGCTTATTCTTGATGGGAAGGAACCCGTTTGTGAATGCAATTCTTGCTATGGAGGCCCTGACTGCTCTCAATTTTTAACTGCTTGTGCAGCAAATGCTGATAGTGGAGACCCACTTTTCTTGGAGCCATTTTGGATGCAACATGCAGCCAAAAGTGCAGTTGTAGTAGCAGGCTGGCATCGAATGAGCTATACCTTTGCTGATCAATCTCGCATCTCAGCAAAGCTTGAGAGGCACATTCGCAAACTTCATGCCATTGTTGGAAATGCGGTGACTCAAGGAAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAACGCTGCACTTCACGCACTCTCTTCCAATAATCTCAGCTCTTCCTCACCTGCAAGTGTTGTGGTTTCGGTTCCTTATTACAGGCTTTACCAAGAGCAAGCGGAGTTCGTTCGATCAGTGGACTACAAGTTTGAAGGAGATGCAGCCGTGTTGCAGAACATTTCAGATGCTAATACAAACGTCATTGAGTTTGTAACCTCCCCAAACAACCCTGATGGGAAGTTGAAAAAGGCCATTTTTCAAGGCTCAAATGCCAAAGCAATCTATGATCGTGTGTATTACTGGCCCCATTTTACAGCAATTCCTGCTCCAGCCGATGATGATATCATGATATTTTCTATTTCTAAGCTCACTGGCCATGCCGGTAGCAGATTCGGGTGGGCAGTGGTGAAGGATGAGTCTGTATACAAAAGAATGAGTGAGAGTATACAGATAAGTAGCTTGGGTGTTTCTCGGGATGCTCAGCTCAGAGCTTTGAAGCTTCTGAATGTAGTGCTTGAAACTGGAGGCAAGGAAATATTTGAATTCGGATACAACAAAGTGAAGAGACGCTGGGAAAAATTGAGCAACACTTTGGCTCTGTCAAACCGATTTTCTCTACAGAAAATTGCACCACAATACTGCACTTATTTCAAAAAAACCAGAAAACCTTCACCAGGTTATGTGTGGTTGAAATGCGAGAGGGAAGAGGATAAAGATTGCTATGCAGTACTCCAAAAAGAAGCCAATATTTATGGCCGTAGAGGTAGCTTGTTTGGTGCTGAAGATCGACATGTACGTCTCACTCTCTTAAGGAGCCAAGATGATTTTGATATATTGCTTCACCGGCTCAACCAATTAGTCTTGAAAGAAAGTGAACCCCAAAAGTTATTTGTCAACGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

464

Amino Acids

51.8

Weight (kDa)

8.38

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AasI	GACNNNNNNGTC	1 cut(s)	1281
Acc36I	ACCTGC	1 cut(s)	562
AccI	GTMKAC	2 cut(s)	909, 931
AciI	CCGC	2 cut(s)	452, 605
AcoI	YGGCCR	2 cut(s)	859, 1240
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	1 cut(s)	1287
AcvI	CACGTG	1 cut(s)	139
AfaI	GTAC	2 cut(s)	1215, 1281
AfiI	CCNNNNNNNGG	1 cut(s)	1160
AflII	CTTAAG	1 cut(s)	1294
AflIII	ACRYGT	1 cut(s)	1276
AjnI	CCWGG	1 cut(s)	1159
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	4 cut(s)	154, 285, 1045, 1289
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	5 cut(s)	238, 735, 788, 859, 1240
ApeKI	GCWGC	6 cut(s)	119, 143, 272, 329, 509, 647
ApoI	RAATTY	1 cut(s)	1028
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
Asp700I	GAANNNNTTC	1 cut(s)	1153
AspS9I	GGNCC	2 cut(s)	239, 789
AsuHPI	GGTGA	5 cut(s)	466, 543, 904, 1149, 1319
AvaI	CYCGRG	1 cut(s)	957
BalI	TGGCCA	1 cut(s)	861
BbrPI	CACGTG	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	6 cut(s)	131, 155, 284, 341, 496, 659
BccI	CCATC	3 cut(s)	176, 191, 713
BceAI	ACGGC	3 cut(s)	131, 635, 1227
BciT130I	CCWGG	1 cut(s)	1161
BciVI	GTATCC	1 cut(s)	1028
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	4 cut(s)	154, 285, 1045, 1289
BfmI	CTRYAG	1 cut(s)	1103
BfrI	CTTAAG	1 cut(s)	1294
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	1028
BisI	GCNGC	6 cut(s)	120, 144, 273, 330, 510, 648
BlpI	GCTNAGC	2 cut(s)	132, 966
BlsI	GCNGC	6 cut(s)	121, 145, 274, 331, 511, 649
BmcAI	AGTACT	1 cut(s)	1215
Bme1390I	CCNGG	1 cut(s)	1161
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	2 cut(s)	239, 789
BmiI	GGNNCC	5 cut(s)	207, 309, 576, 791, 1301
BmrFI	CCNGG	1 cut(s)	1161
BmsI	GCATC	6 cut(s)	309, 370, 405, 634, 661, 952
BpmI	CTGGAG	2 cut(s)	798, 1029
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	2 cut(s)	132, 966
BpuEI	CTTGAG	2 cut(s)	431, 444
BsaAI	YACGTR	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	1160
Bse118I	RCCGGY	2 cut(s)	866, 1329
Bse1I	ACTGG	3 cut(s)	791, 862, 1012
BseBI	CCWGG	1 cut(s)	1161
BseGI	GGATG	4 cut(s)	187, 324, 904, 967
BseLI	CCNNNNNNNGG	1 cut(s)	1160
BseMII	CTCAG	7 cut(s)	92, 123, 171, 414, 553, 980, 985
BseNI	ACTGG	3 cut(s)	791, 862, 1012
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	6 cut(s)	131, 155, 284, 341, 496, 659
BseYI	CCCAGC	1 cut(s)	1056
BsgI	GTGCAG	4 cut(s)	291, 360, 495, 1111
BshFI	GGCC	5 cut(s)	240, 737, 790, 861, 1242
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	957
BsiSI	CCGG	2 cut(s)	867, 1330
BslI	CCNNNNNNNGG	1 cut(s)	1160
BsmAI	GTCTC	4 cut(s)	154, 285, 1045, 1289
BsmBI	CGTCTC	3 cut(s)	154, 1045, 1289
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	5 cut(s)	240, 737, 790, 861, 1242
Bso31I	GGTCTC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	385, 617, 772, 1270
Bsp1720I	GCTNAGC	2 cut(s)	132, 966
BspACI	CCGC	2 cut(s)	452, 605
BspANI	GGCC	5 cut(s)	240, 737, 790, 861, 1242
BspCNI	CTCAG	7 cut(s)	93, 124, 170, 413, 552, 979, 984
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	5 cut(s)	207, 309, 576, 791, 1301
BspMI	ACCTGC	1 cut(s)	562
BspQI	GCTCTTC	2 cut(s)	163, 550
BspTI	CTTAAG	1 cut(s)	1294
BspTNI	GGTCTC	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	866, 1329
BsrI	ACTGG	3 cut(s)	791, 862, 1012
BssAI	RCCGGY	2 cut(s)	866, 1329
BssMI	GATC	4 cut(s)	385, 617, 772, 1270
BssNAI	GTATAC	2 cut(s)	910, 932
Bst1107I	GTATAC	2 cut(s)	910, 932
Bst2UI	CCWGG	1 cut(s)	1161
Bst6I	CTCTTC	5 cut(s)	163, 532, 550, 1043, 1185
BstAFI	CTTAAG	1 cut(s)	1294
BstAPI	GCANNNNNTGC	3 cut(s)	228, 278, 809
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	4 cut(s)	355, 359, 487, 603
BstDEI	CTNAG	9 cut(s)	6, 101, 132, 157, 400, 539, 849, 966, 971
BstENI	CCTNNNNNAGG	1 cut(s)	1158
BstF5I	GGATG	4 cut(s)	187, 324, 904, 967
BstKTI	GATC	4 cut(s)	388, 620, 775, 1273
BstMAI	GTCTC	4 cut(s)	154, 285, 1045, 1289
BstMBI	GATC	4 cut(s)	385, 617, 772, 1270
BstNI	CCWGG	1 cut(s)	1161
BstNSI	RCATGY	2 cut(s)	329, 1280
BstSCI	CCNGG	1 cut(s)	1159
BstSFI	CTRYAG	1 cut(s)	1103
BstV1I	GCAGC	6 cut(s)	131, 155, 284, 341, 496, 659
BstZ17I	GTATAC	2 cut(s)	910, 932
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	5 cut(s)	240, 737, 790, 861, 1242
BtsCI	GGATG	4 cut(s)	187, 324, 904, 967
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	3 cut(s)	627, 855, 894
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	4 cut(s)	355, 359, 487, 603
CciI	TCATGA	1 cut(s)	831
Cfr10I	RCCGGY	2 cut(s)	866, 1329
Cfr13I	GGNCC	2 cut(s)	239, 789
CseI	GACGC	1 cut(s)	1062
CsiI	ACCWGGT	1 cut(s)	1159
Csp6I	GTAC	2 cut(s)	1214, 1280
CspCI	CAANNNNNGTGG	4 cut(s)	285, 320, 546, 581
CviAII	CATG	6 cut(s)	164, 326, 434, 832, 863, 1277
CviQI	GTAC	2 cut(s)	1214, 1280
DdeI	CTNAG	9 cut(s)	6, 101, 132, 157, 400, 539, 849, 966, 971
DpnI	GATC	4 cut(s)	387, 619, 774, 1272
DpnII	GATC	4 cut(s)	385, 617, 772, 1270
DrdI	GACNNNNNNGTC	1 cut(s)	1281
DseDI	GACNNNNNNGTC	1 cut(s)	1281
EaeI	YGGCCR	2 cut(s)	859, 1240
Eam1104I	CTCTTC	5 cut(s)	163, 532, 550, 1043, 1185
EarI	CTCTTC	5 cut(s)	163, 532, 550, 1043, 1185
Eco31I	GGTCTC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	1287
Eco72I	CACGTG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	957
EcoNI	CCTNNNNNAGG	1 cut(s)	1158
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	1159
EcoRV	GATATC	1 cut(s)	829
Esp3I	CGTCTC	3 cut(s)	154, 1045, 1289
FaeI	CATG	6 cut(s)	167, 329, 437, 835, 866, 1280
FatI	CATG	6 cut(s)	163, 325, 433, 831, 862, 1276
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	909, 931
Fnu4HI	GCNGC	6 cut(s)	120, 144, 273, 330, 510, 648
FokI	GGATG	4 cut(s)	194, 331, 911, 974
Fsp4HI	GCNGC	6 cut(s)	120, 144, 273, 330, 510, 648
GluI	GCNGC	6 cut(s)	120, 144, 273, 330, 510, 648
GsaI	CCCAGC	1 cut(s)	1060
GsuI	CTGGAG	2 cut(s)	798, 1029
HaeIII	GGCC	5 cut(s)	240, 737, 790, 861, 1242
HapII	CCGG	2 cut(s)	867, 1330
HgaI	GACGC	1 cut(s)	1062
Hin1II	CATG	6 cut(s)	167, 329, 437, 835, 866, 1280
HincII	GTYRAC	1 cut(s)	1381
HindII	GTYRAC	1 cut(s)	1381
HindIII	AAGCTT	2 cut(s)	407, 983
HinfI	GANTC	3 cut(s)	457, 876, 902
HpaII	CCGG	2 cut(s)	867, 1330
HphI	GGTGA	5 cut(s)	466, 543, 904, 1149, 1319
Hpy166II	GTNNAC	5 cut(s)	625, 910, 932, 1361, 1381
Hpy188I	TCNGA	4 cut(s)	670, 974, 990, 1034
Hpy188III	TCNNGA	5 cut(s)	70, 194, 832, 959, 1348
Hpy8I	GTNNAC	5 cut(s)	625, 910, 932, 1361, 1381
HpyAV	CCTTC	4 cut(s)	196, 632, 889, 1164
HpyCH4IV	ACGT	3 cut(s)	138, 684, 1282
HpyF3I	CTNAG	9 cut(s)	6, 101, 132, 157, 400, 539, 849, 966, 971
HpySE526I	ACGT	3 cut(s)	138, 684, 1282
Hsp92II	CATG	6 cut(s)	167, 329, 437, 835, 866, 1280
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	385, 617, 772, 1270
LguI	GCTCTTC	2 cut(s)	163, 550
LmnI	GCTCC	7 cut(s)	23, 97, 108, 116, 307, 817, 1299
Lsp1109I	GCAGC	6 cut(s)	131, 155, 284, 341, 496, 659
LweI	GCATC	6 cut(s)	309, 370, 405, 634, 661, 952
MabI	ACCWGGT	1 cut(s)	1159
MaeII	ACGT	3 cut(s)	138, 684, 1282
MaeIII	GTNAC	3 cut(s)	9, 454, 697
MalI	GATC	4 cut(s)	387, 619, 774, 1272
MboI	GATC	4 cut(s)	385, 617, 772, 1270
MboII	GAAGA	8 cut(s)	137, 180, 477, 519, 537, 1060, 1202, 1280
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	861
MluCI	AATT	7 cut(s)	223, 254, 804, 1028, 1064, 1110, 1340
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	2 cut(s)	451, 911
MmeI	TCCRAC	2 cut(s)	86, 424
MnlI	CCTC	9 cut(s)	107, 230, 408, 559, 712, 1004, 1179, 1186, 1241
Mox20I	TGGCCA	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	1153
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	3 cut(s)	54, 260, 1295
Msp20I	TGGCCA	1 cut(s)	861
MspCI	CTTAAG	1 cut(s)	1294
MspI	CCGG	2 cut(s)	867, 1330
MspR9I	CCNGG	1 cut(s)	1161
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	1161
NdeII	GATC	4 cut(s)	385, 617, 772, 1270
NlaIII	CATG	6 cut(s)	167, 329, 437, 835, 866, 1280
NlaIV	GGNNCC	5 cut(s)	207, 309, 576, 791, 1301
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	2 cut(s)	329, 1280
PagI	TCATGA	1 cut(s)	831
PaqCI	CACCTGC	1 cut(s)	562
PciI	ACATGT	1 cut(s)	1276
PciSI	GCTCTTC	2 cut(s)	163, 550
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 1279
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	1153
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	6 cut(s)	121, 145, 274, 331, 511, 649
PleI	GAGTC	2 cut(s)	451, 910
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	2 cut(s)	451, 910
Ppu21I	YACGTR	1 cut(s)	139
PscI	ACATGT	1 cut(s)	1276
Psp6I	CCWGG	1 cut(s)	1159
PspCI	CACGTG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	1056
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	5 cut(s)	207, 309, 576, 791, 1301
PspPI	GGNCC	2 cut(s)	239, 789
RsaI	GTAC	2 cut(s)	1215, 1281
RsaNI	GTAC	2 cut(s)	1214, 1280
SapI	GCTCTTC	2 cut(s)	163, 550
SaqAI	TTAA	3 cut(s)	54, 260, 1295
SatI	GCNGC	6 cut(s)	120, 144, 273, 330, 510, 648
Sau3AI	GATC	4 cut(s)	385, 617, 772, 1270
Sau96I	GGNCC	2 cut(s)	239, 789
ScaI	AGTACT	1 cut(s)	1215
SchI	GAGTC	2 cut(s)	451, 911
ScrFI	CCNGG	1 cut(s)	1161
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	1159
SfaNI	GCATC	6 cut(s)	309, 370, 405, 634, 661, 952
SfcI	CTRYAG	1 cut(s)	1103
SmlI	CTYRAG	3 cut(s)	410, 459, 1294
SmoI	CTYRAG	3 cut(s)	410, 459, 1294
Sse9I	AATT	7 cut(s)	223, 254, 804, 1028, 1064, 1110, 1340
SsiI	CCGC	2 cut(s)	452, 605
SspI	AATATT	2 cut(s)	1023, 1234
StyD4I	CCNGG	1 cut(s)	1159
TaiI	ACGT	3 cut(s)	141, 687, 1285
TaqI	TCGA	3 cut(s)	364, 616, 1273
TasI	AATT	7 cut(s)	223, 254, 804, 1028, 1064, 1110, 1340
TatI	WGTACW	1 cut(s)	1213
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	3 cut(s)	54, 260, 1295
Tru9I	TTAA	3 cut(s)	54, 260, 1295
TscAI	CASTG	3 cut(s)	627, 862, 894
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	6 cut(s)	119, 143, 272, 329, 509, 647
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	3 cut(s)	627, 862, 894
Vha464I	CTTAAG	1 cut(s)	1294
XagI	CCTNNNNNAGG	1 cut(s)	1158
XapI	RAATTY	1 cut(s)	1028
XceI	RCATGY	2 cut(s)	329, 1280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XmiI	GTMKAC	2 cut(s)	909, 931
XmnI	GAANNNNTTC	1 cut(s)	1153
ZrmI	AGTACT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.