RchiOBHm_Chr6g0274171

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
35540793 .. 35544486
3694 bp
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UTR
Exon/CDS
Intron
PRQ24596

Sequence Viewer

Length: 1431 bp
ATGGATAAGCTACAACAAAGCTCCTACGTTGTGTGCCTGGCATTTTCTATAGTTCTAAATCTGTCATTGATATTCAAGCTCTATGGACATGGAGGTCAGTGGGAGCTCAGTTGGAGCAGAAGGGCAGCAGAAGAAGCCGAGTACGTCGCCGCCGTCCCTTGCTCGGGGCATGGCAGAACCTACTTGGATGGCTTGGTTCTTGATGGCAAGCAACCCGCTTGTGAGTGCAATTCTTGCTATGGAGGCTCAGATTGTTCTCAGTTCTTAACTGATTGTGAATCAAATGCTGACGGTGGGGATCCATATTTCTTAGAGCCCTTTTGGATGCAACATGCTTCTGAAAGTGCAATTCTAGTAGCAGGGTGGCATCGAATGGGCTATACTTTCTCTGATTATGCTTACATCTCACAAGAGCTTGAGAGGCTCATCCGCAAAGTACACGACATTGCTGGTAATGCAGTCACTCAAGGAAGGTACATTGTAATTGGTGCTGGCTCAACCCATCTCCTCAACGCTGCAGTTAAAGCGCTCTCTTTCTCATCAACCAGTAGTTTCAACTCATCATCATCCTCACCTGCTAGTGTTGTTGTTTCAATTCCTTTTTACGCGCTTTATGAAGCGCAAACGGAATACTTCCGATCAGTGGATTACAAGTTTGAAGGGGATGGTTCGTTGCTGCAGAACATCACAGATGGAACTAAGAGGGTTATTGAGTTTGTAACCGCACCAAACAATCCTGATGGGAAGCTAAATAAAGCAAATTTTCAAGGACCAAATTCCGAAGCAATCTATGATCGTGTTTATTATTGGCCACATTTCACACCCATTCCAACTCCAGCAAATGACAATGTCATGGTGTTTTCAATCTCCAAGCTCACAGGCCATGCTGGTACAAGATTAGGGTGGGCAGTGATAAAGGATGAGGAAGTGTACCAAAGAATGTTGCAGCATACTCTGACAAGTAACTTGGGTATTTCTCGCGATGCTCAGCTAAGAGCTTTGAAGCTTTTGAAAGTAGTCGTAGAAGGTGGAGGAAAAGAAATTTTCCAATTCGGATACACCACTATGAGGAACCGTTGGGAAAATTTGAGTAACGCCCTGTCTGTGTCAAACCGCTTTTCTCTGCAGAAAGTTGAACCTCAGTACTGCACTTTTTTCCAGAAAATTAGAGGACCATCTCCTGCCTTTGCGTGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTACACAGTCCTCAAAGAAGAAGCTAATGTTTACGGCCGTAGTGGAAGTGTCTTTGGTGCTGAAGATCGATATGTACGTCTCGCCCTCATAAGGAGCCAAGATGATTTCGATATATTGCTTTACCGACTGAACCAGTTAGTCTCCAAGGAAGATGCACAGCCCCAAATTTATATGAAAAATGTGACAAACCCATCACTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

53.29

Weight (kDa)

5.8

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 37 - 92 1.2e-28 Alliinase EGF-like domain
Alliinase_C PF04864 95 - 456 3.1e-139 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
AasI GACNNNNNNGTC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 583
AccII CGCG 2 cut(s) 608, 981
AciI CCGC 5 cut(s) 150, 216, 430, 723, 1114
AclWI GGATC 2 cut(s) 293, 306
AcoI YGGCCR 2 cut(s) 809, 1261
AcsI RAATTY 5 cut(s) 760, 775, 1041, 1084, 1392
AcuI CTGAAG 1 cut(s) 1308
AfaI GTAC 7 cut(s) 143, 438, 476, 892, 932, 1145, 1302
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
AgsI TTSAA 9 cut(s) 76, 556, 594, 659, 767, 864, 1003, 1012, 1136
AjnI CCWGG 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 1310, 1372
AlwI GGATC 2 cut(s) 293, 306
Ama87I CYCGRG 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 3 cut(s) 809, 880, 1261
ApeKI GCWGC 4 cut(s) 125, 515, 676, 946
ApoI RAATTY 5 cut(s) 760, 775, 1041, 1084, 1392
AspLEI GCGC 3 cut(s) 529, 610, 622
AspS9I GGNCC 2 cut(s) 770, 1172
AsuHPI GGTGA 2 cut(s) 564, 1207
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 2 cut(s) 770, 1172
BalI TGGCCA 1 cut(s) 811
BamHI GGATCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 108, 318
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 137, 502, 663, 958
BccI CCATC 8 cut(s) 182, 197, 510, 659, 686, 734, 1183, 1426
BceAI ACGGC 3 cut(s) 137, 1248, 1276
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 1049
BcoDI GTCTC 2 cut(s) 1310, 1372
BfaI CTAG 2 cut(s) 353, 579
BfmI CTRYAG 4 cut(s) 48, 516, 677, 1124
BfoI RGCGCY 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 583
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 5 cut(s) 126, 150, 516, 677, 947
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 5 cut(s) 127, 151, 517, 678, 948
BmcAI AGTACT 1 cut(s) 1145
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 770, 1172
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 770, 1172
BmiI GGNNCC 3 cut(s) 300, 1073, 1322
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 4 cut(s) 315, 376, 973, 1369
BpmI CTGGAG 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 437, 450
Bsa29I ATCGAT 1 cut(s) 1294
BsaJI CCNNGG 1 cut(s) 1371
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
Bse1I ACTGG 2 cut(s) 546, 1360
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 1294
BseDI CCNNGG 1 cut(s) 1371
BseGI GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BseLI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 5 cut(s) 121, 261, 272, 1001, 1154
BseNI ACTGG 2 cut(s) 546, 1360
BseRI GAGGAG 1 cut(s) 497
BseX3I CGGCCG 1 cut(s) 1261
BseXI GCAGC 4 cut(s) 137, 502, 663, 958
BsgI GTGCAG 1 cut(s) 1132
Bsh1236I CGCG 2 cut(s) 608, 981
Bsh1285I CGRYCG 1 cut(s) 1264
BshFI GGCC 3 cut(s) 811, 882, 1263
BshVI ATCGAT 1 cut(s) 1294
BsiEI CGRYCG 1 cut(s) 1264
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 6 cut(s) 163, 164, 643, 1068, 1191, 1317
BsmAI GTCTC 2 cut(s) 1310, 1372
BsmBI CGTCTC 1 cut(s) 1310
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 3 cut(s) 811, 882, 1263
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 108, 318
Bsp143I GATC 4 cut(s) 298, 638, 793, 1291
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp68I TCGCGA 1 cut(s) 981
BspACI CCGC 5 cut(s) 150, 216, 430, 723, 1114
BspANI GGCC 3 cut(s) 811, 882, 1263
BspCNI CTCAG 5 cut(s) 120, 260, 271, 1000, 1153
BspDI ATCGAT 1 cut(s) 1294
BspFNI CGCG 2 cut(s) 608, 981
BspLI GGNNCC 3 cut(s) 300, 1073, 1322
BspMAI CTGCAG 3 cut(s) 520, 681, 1128
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 293, 306
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 2 cut(s) 546, 1360
BssECI CCNNGG 1 cut(s) 1371
BssMI GATC 4 cut(s) 298, 638, 793, 1291
BssT1I CCWWGG 1 cut(s) 1371
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 293, 1076, 1234
Bst6I CTCTTC 1 cut(s) 1206
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 209, 493
BstDEI CTNAG 9 cut(s) 107, 247, 258, 310, 699, 987, 992, 1140, 1428
BstF5I GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BstFNI CGCG 2 cut(s) 608, 981
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 3 cut(s) 529, 610, 622
BstKTI GATC 4 cut(s) 301, 641, 796, 1294
BstMAI GTCTC 2 cut(s) 1310, 1372
BstMBI GATC 4 cut(s) 298, 638, 793, 1291
BstMCI CGRYCG 1 cut(s) 1264
BstMWI GCNNNNNNNGC 6 cut(s) 134, 234, 243, 421, 455, 524
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 4 cut(s) 48, 516, 677, 1124
BstUI CGCG 2 cut(s) 608, 981
BstV1I GCAGC 4 cut(s) 137, 502, 663, 958
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 1261
Bsu15I ATCGAT 1 cut(s) 1294
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 3 cut(s) 811, 882, 1263
BsuTUI ATCGAT 1 cut(s) 1294
BtgZI GCGATG 1 cut(s) 996
BtsCI GGATG 6 cut(s) 193, 330, 426, 566, 670, 925
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 104, 648, 915
BtuMI TCGCGA 1 cut(s) 981
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 209, 493
CfoI GCGC 3 cut(s) 529, 610, 622
Cfr13I GGNCC 2 cut(s) 770, 1172
ClaI ATCGAT 1 cut(s) 1294
Csp6I GTAC 7 cut(s) 142, 437, 475, 891, 931, 1144, 1301
CviAII CATG 5 cut(s) 89, 170, 332, 853, 884
CviQI GTAC 7 cut(s) 142, 437, 475, 891, 931, 1144, 1301
DdeI CTNAG 9 cut(s) 107, 247, 258, 310, 699, 987, 992, 1140, 1428
DpnI GATC 4 cut(s) 300, 640, 795, 1293
DpnII GATC 4 cut(s) 298, 638, 793, 1291
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 809, 1261
EagI CGGCCG 1 cut(s) 1261
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 1261
Eco130I CCWWGG 1 cut(s) 1371
Eco24I GRGCYC 2 cut(s) 108, 318
Eco47I GGWCC 2 cut(s) 770, 1172
Eco47III AGCGCT 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 1261
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1308
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 1371
EcoT38I GRGCYC 2 cut(s) 108, 318
ErhI CCWWGG 1 cut(s) 1371
Esp3I CGTCTC 1 cut(s) 1310
FaeI CATG 5 cut(s) 92, 173, 335, 856, 887
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 88, 169, 331, 852, 883
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 126, 150, 516, 677, 947
FokI GGATG 6 cut(s) 200, 337, 413, 553, 677, 932
FriOI GRGCYC 2 cut(s) 108, 318
Fsp4HI GCNGC 5 cut(s) 126, 150, 516, 677, 947
FspBI CTAG 2 cut(s) 353, 579
GlaI GCGC 3 cut(s) 528, 609, 621
GluI GCNGC 5 cut(s) 126, 150, 516, 677, 947
GsuI CTGGAG 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 3 cut(s) 811, 882, 1263
HhaI GCGC 3 cut(s) 529, 610, 622
Hin1II CATG 5 cut(s) 92, 173, 335, 856, 887
Hin6I GCGC 3 cut(s) 527, 608, 620
HinP1I GCGC 3 cut(s) 527, 608, 620
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 1 cut(s) 278
HphI GGTGA 2 cut(s) 564, 1207
Hpy166II GTNNAC 3 cut(s) 439, 931, 1258
Hpy188I TCNGA 7 cut(s) 250, 340, 391, 638, 781, 957, 1055
Hpy188III TCNNGA 4 cut(s) 200, 737, 980, 1159
Hpy8I GTNNAC 3 cut(s) 439, 931, 1258
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 114, 465, 653, 1019
HpyCH4III ACNGT 3 cut(s) 293, 1076, 1234
HpyCH4IV ACGT 3 cut(s) 27, 144, 1303
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 234, 243, 421, 455, 524
HpyF3I CTNAG 9 cut(s) 107, 247, 258, 310, 699, 987, 992, 1140, 1428
HpySE526I ACGT 3 cut(s) 27, 144, 1303
Hsp92II CATG 5 cut(s) 92, 173, 335, 856, 887
HspAI GCGC 3 cut(s) 527, 608, 620
Kzo9I GATC 4 cut(s) 298, 638, 793, 1291
LmnI GCTCC 4 cut(s) 26, 103, 114, 1320
Lsp1109I GCAGC 4 cut(s) 137, 502, 663, 958
LweI GCATC 4 cut(s) 315, 376, 973, 1369
MaeI CTAG 2 cut(s) 353, 579
MaeII ACGT 3 cut(s) 27, 144, 1303
MaeIII GTNAC 5 cut(s) 460, 718, 962, 1091, 1408
MalI GATC 4 cut(s) 300, 640, 795, 1293
MboI GATC 4 cut(s) 298, 638, 793, 1291
MboII GAAGA 5 cut(s) 143, 1223, 1256, 1301, 1388
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 108, 318
MlsI TGGCCA 1 cut(s) 811
MluNI TGGCCA 1 cut(s) 811
MmeI TCCRAC 2 cut(s) 92, 854
Mox20I TGGCCA 1 cut(s) 811
MscI TGGCCA 1 cut(s) 811
MseI TTAA 2 cut(s) 266, 522
MslI CAYNNNNRTG 1 cut(s) 1064
Msp20I TGGCCA 1 cut(s) 811
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 608, 981
MwoI GCNNNNNNNGC 6 cut(s) 134, 234, 243, 421, 455, 524
NdeII GATC 4 cut(s) 298, 638, 793, 1291
NlaIII CATG 5 cut(s) 92, 173, 335, 856, 887
NlaIV GGNNCC 3 cut(s) 300, 1073, 1322
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 460, 1408
NruI TCGCGA 1 cut(s) 981
NspI RCATGY 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 1300
PfeI GAWTC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 848
PkrI GCNGC 5 cut(s) 127, 151, 517, 678, 948
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 300, 1073, 1322
PspPI GGNCC 2 cut(s) 770, 1172
PstI CTGCAG 3 cut(s) 520, 681, 1128
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 848
RruI TCGCGA 1 cut(s) 981
RsaI GTAC 7 cut(s) 143, 438, 476, 892, 932, 1145, 1302
RsaNI GTAC 7 cut(s) 142, 437, 475, 891, 931, 1144, 1301
RseI CAYNNNNRTG 1 cut(s) 1064
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 266, 522
SatI GCNGC 5 cut(s) 126, 150, 516, 677, 947
Sau3AI GATC 4 cut(s) 298, 638, 793, 1291
Sau96I GGNCC 2 cut(s) 770, 1172
ScaI AGTACT 1 cut(s) 1145
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 108, 318
SfaNI GCATC 4 cut(s) 315, 376, 973, 1369
SfcI CTRYAG 4 cut(s) 48, 516, 677, 1124
SinI GGWCC 2 cut(s) 770, 1172
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 416, 465
SmoI CTYRAG 2 cut(s) 416, 465
SsiI CCGC 5 cut(s) 150, 216, 430, 723, 1114
SspMI CTAG 2 cut(s) 353, 579
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 1371
TaaI ACNGT 3 cut(s) 293, 1076, 1234
TaiI ACGT 3 cut(s) 30, 147, 1306
TaqI TCGA 3 cut(s) 370, 1294, 1335
TatI WGTACW 2 cut(s) 436, 1143
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 266, 522
Tru9I TTAA 2 cut(s) 266, 522
TscAI CASTG 3 cut(s) 104, 648, 915
TseFI GTSAC 2 cut(s) 460, 1408
TseI GCWGC 4 cut(s) 125, 515, 676, 946
Tsp45I GTSAC 2 cut(s) 460, 1408
TspDTI ATGAA 2 cut(s) 630, 1415
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 3 cut(s) 104, 648, 915
Tth111I GACNNNGTC 1 cut(s) 848
VpaK11BI GGWCC 2 cut(s) 770, 1172
XapI RAATTY 5 cut(s) 760, 775, 1041, 1084, 1392
XceI RCATGY 1 cut(s) 335
XspI CTAG 2 cut(s) 353, 579
ZrmI AGTACT 1 cut(s) 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.