Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

2887701 .. 2890688

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGGTAAGGCACAATGCTCCTATGTTGTTATCCTAGCGTGTTCTTTACTTGTTAATCTATTGGTGGTTTTTAAATCAATCTATACGGATGGAGAGTGGGCGCTGAGTTGGACCAAAAGAGCAGCAGAACAAGCTGAGCAGGTGGCAGCCATCTGTTGCTCAGGCCATGGAAGAGCCTACTTGGACGGCTTGGTTCTTGATGGAAAGGAACCTGTTTGTGAGTGCAATTCCTGCTACGGAGGCCCTGACTGCTCTGAGTTTACAACTGATTGTGCAGCAAATGCTGAAAGTGGGAATCCATATTTCTTGGAGCCATTTTGGATGCAGCATGCAGCTAAAAGCGCAATTCTAGTAGCTGGGTGGCATAGAATGGGGTATTCCTATCCTGATGACTCTTACATATCAACACAGCTCGAGGCGAGCATCCGTAAATTACATGCCGTTGTTGGAAATGCGGTCACTGAAGGAAAATATTTTGTTTTCGGAGCTGGCTCAACGCAACTTCTCAACGCTGCAGTTCATGCACTCGCTCCTGAGAATTCCTCCTCACCTGCAAGTGTTGTTGCTTCAATTCCTTACTACAAGCTTTACGAGACCCAAACGGAACTTTTCAGATCACTGGACTATCTGTTTGAAGGAGATGTATCATCATTGAAGAACATTTCAGATGCCGATCACGTTATTGAGTTTGTAACCTCACCAAACAATCCTGATGGGAAGCTGAATAAGGCAGTTCTTCATGGCCCCAATTTCTCTGCAATCTATGATCGTGTCTATTACTGGCCGCATTTTACAGCGATTCCAACTTCAGTAGATGATGATCTCATGATTTTTTCACTTTCCAAGCTCACTGGCCATGCTGGCTCTCGATTTGGATGGGCAGTGATAAAGAATGAGTCTGTGTATCAAAGAATGGCGGAGTATATGAGTACAAGCAGCATGGGTGTTTCTCGGGATGCTCAGCTAAGAGCTTTGAAGCTTATCGATGTAGCTCTTGAAACTGGAGGCAGGGAAATCTTCGAATTCGGATACACCACCATGAAGGACCGCTGGGAAAAATTGACCAACACCCTATCTGTTTCCAACCGATTTTCTCTACAGAAAATTGCACCCCAATATTGCACTTATTTTCAGAAAATTAGAGGACCCTCACCAGCTTATGCGTGGGTGAAGTGCGAGAGGGAAGAAGATGAAGATTGCTGCAAAGTCCTGGAAGAAGCAAAAGTTAATGGGCGTAGCGGTAGCGAGTTTGCAGCTGAAAACCGCTATGTCCGTCTCAGCCTAATAAGGACCCAAGATGACTTTGATGTATTAATTCAGCGACTAAGCGAGTTGGTCTTGGAAGAAAGACAACAACCGAGCTATGCAAACAATGTGTTAGACCACAATAAGCCATTGGTGAACTCCATAAGGAGGGGTCTTCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

477

Amino Acids

53.06

Weight (kDa)

5.42

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	130, 559
Acc36I	ACCTGC	2 cut(s)	130, 559
AciI	CCGC	6 cut(s)	455, 785, 917, 1048, 1239, 1264
AcoI	YGGCCR	2 cut(s)	782, 853
AcsI	RAATTY	2 cut(s)	538, 1022
AcuI	CTGAAG	2 cut(s)	483, 792
AfaI	GTAC	1 cut(s)	931
AfiI	CCNNNNNNNGG	1 cut(s)	1413
AgsI	TTSAA	5 cut(s)	570, 635, 655, 976, 998
AjnI	CCWGG	1 cut(s)	1209
Alw26I	GTCTC	2 cut(s)	587, 1280
Ama87I	CYCGRG	2 cut(s)	413, 951
AoxI	GGCC	5 cut(s)	163, 241, 742, 782, 853
ApeKI	GCWGC	9 cut(s)	122, 146, 275, 325, 332, 512, 936, 1200, 1253
ApoI	RAATTY	2 cut(s)	538, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AseI	ATTAAT	1 cut(s)	1313
AspLEI	GCGC	2 cut(s)	103, 344
AspS9I	GGNCC	6 cut(s)	111, 242, 743, 1045, 1145, 1290
AsuHPI	GGTGA	5 cut(s)	540, 690, 1143, 1180, 1411
AsuII	TTCGAA	1 cut(s)	1020
AvaI	CYCGRG	2 cut(s)	413, 951
AvaII	GGWCC	4 cut(s)	111, 1045, 1145, 1290
BalI	TGGCCA	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	1412
BbvI	GCAGC	9 cut(s)	134, 158, 287, 337, 344, 499, 948, 1187, 1265
BccI	CCATC	5 cut(s)	83, 158, 194, 707, 870
BceAI	ACGGC	2 cut(s)	202, 425
BciT130I	CCWGG	1 cut(s)	1211
BciVI	GTATCC	1 cut(s)	1022
BcoDI	GTCTC	2 cut(s)	587, 1280
BfaI	CTAG	2 cut(s)	35, 350
BfmI	CTRYAG	2 cut(s)	513, 1097
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	2 cut(s)	130, 559
BfuI	GTATCC	1 cut(s)	1022
BglI	GCCNNNNNGGC	1 cut(s)	861
BlpI	GCTNAGC	2 cut(s)	135, 960
Bme1390I	CCNGG	1 cut(s)	1211
Bme18I	GGWCC	4 cut(s)	111, 1045, 1145, 1290
BmeT110I	CYCGRG	2 cut(s)	413, 951
BmgT120I	GGNCC	6 cut(s)	111, 242, 743, 1045, 1145, 1290
BmiI	GGNNCC	5 cut(s)	210, 312, 745, 1147, 1292
BmrFI	CCNGG	1 cut(s)	1211
BmsI	GCATC	4 cut(s)	312, 432, 658, 946
BpiI	GAAGAC	1 cut(s)	1412
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	1023
Bpu10I	CCTNAGC	1 cut(s)	160
Bpu1102I	GCTNAGC	2 cut(s)	135, 960
Bpu14I	TTCGAA	1 cut(s)	1020
Bsa29I	ATCGAT	1 cut(s)	984
BsaBI	GATNNNNATC	2 cut(s)	672, 819
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	1413
Bse1I	ACTGG	4 cut(s)	624, 785, 856, 1006
Bse8I	GATNNNNATC	2 cut(s)	672, 819
BseBI	CCWGG	1 cut(s)	1211
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	5 cut(s)	94, 327, 423, 881, 961
BseJI	GATNNNNATC	2 cut(s)	672, 819
BseLI	CCNNNNNNNGG	1 cut(s)	1413
BseMII	CTCAG	7 cut(s)	95, 126, 174, 246, 525, 974, 1291
BseNI	ACTGG	4 cut(s)	624, 785, 856, 1006
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	9 cut(s)	134, 158, 287, 337, 344, 499, 948, 1187, 1265
BseYI	CCCAGC	2 cut(s)	356, 1050
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	165, 243, 744, 784, 855
BshVI	ATCGAT	1 cut(s)	984
BsiHKCI	CYCGRG	2 cut(s)	413, 951
BslI	CCNNNNNNNGG	1 cut(s)	1413
BsmAI	GTCTC	2 cut(s)	587, 1280
BsmBI	CGTCTC	1 cut(s)	1280
BsnI	GGCC	5 cut(s)	165, 243, 744, 784, 855
Bso31I	GGTCTC	1 cut(s)	587
BsoBI	CYCGRG	2 cut(s)	413, 951
Bsp119I	TTCGAA	1 cut(s)	1020
Bsp143I	GATC	4 cut(s)	614, 673, 766, 820
Bsp1720I	GCTNAGC	2 cut(s)	135, 960
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	6 cut(s)	455, 785, 917, 1048, 1239, 1264
BspANI	GGCC	5 cut(s)	165, 243, 744, 784, 855
BspCNI	CTCAG	7 cut(s)	96, 127, 173, 247, 526, 973, 1290
BspDI	ATCGAT	1 cut(s)	984
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	5 cut(s)	210, 312, 745, 1147, 1292
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	2 cut(s)	130, 559
BspQI	GCTCTTC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	1020
BspTNI	GGTCTC	1 cut(s)	587
BsrI	ACTGG	4 cut(s)	624, 785, 856, 1006
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	614, 673, 766, 820
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	1211
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	3 cut(s)	231, 281, 521
BstBI	TTCGAA	1 cut(s)	1020
BstC8I	GCNNGC	4 cut(s)	330, 421, 490, 862
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	5 cut(s)	94, 327, 423, 881, 961
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 344
BstKTI	GATC	4 cut(s)	617, 676, 769, 823
BstMAI	GTCTC	2 cut(s)	587, 1280
BstMBI	GATC	4 cut(s)	614, 673, 766, 820
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 231, 240, 249, 281, 341, 521, 861
BstNI	CCWGG	1 cut(s)	1211
BstNSI	RCATGY	2 cut(s)	332, 440
BstSCI	CCNGG	1 cut(s)	1209
BstSFI	CTRYAG	2 cut(s)	513, 1097
BstV1I	GCAGC	9 cut(s)	134, 158, 287, 337, 344, 499, 948, 1187, 1265
BstV2I	GAAGAC	1 cut(s)	1412
Bsu15I	ATCGAT	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	1022
BsuRI	GGCC	5 cut(s)	165, 243, 744, 784, 855
BsuTUI	ATCGAT	1 cut(s)	984
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	94, 327, 423, 881, 961
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	4 cut(s)	459, 617, 849, 888
BveI	ACCTGC	2 cut(s)	130, 559
Cac8I	GCNNGC	4 cut(s)	330, 421, 490, 862
CciI	TCATGA	1 cut(s)	825
CfoI	GCGC	2 cut(s)	103, 344
Cfr13I	GGNCC	6 cut(s)	111, 242, 743, 1045, 1145, 1290
ClaI	ATCGAT	1 cut(s)	984
Csp6I	GTAC	1 cut(s)	930
CviAII	CATG	9 cut(s)	167, 329, 437, 521, 740, 826, 857, 940, 1039
CviQI	GTAC	1 cut(s)	930
DpnI	GATC	4 cut(s)	616, 675, 768, 822
DpnII	GATC	4 cut(s)	614, 673, 766, 820
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	782, 853
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	4 cut(s)	111, 1045, 1145, 1290
Eco57I	CTGAAG	2 cut(s)	483, 792
Eco88I	CYCGRG	2 cut(s)	413, 951
EcoO109I	RGGNCCY	3 cut(s)	242, 1145, 1290
EcoRI	GAATTC	2 cut(s)	538, 1022
EcoRII	CCWGG	1 cut(s)	1209
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	1280
FaeI	CATG	9 cut(s)	170, 332, 440, 524, 743, 829, 860, 943, 1042
FatI	CATG	9 cut(s)	166, 328, 436, 520, 739, 825, 856, 939, 1038
FokI	GGATG	5 cut(s)	101, 334, 410, 888, 968
FspBI	CTAG	2 cut(s)	35, 350
GlaI	GCGC	2 cut(s)	102, 343
GsaI	CCCAGC	2 cut(s)	360, 1054
GsuI	CTGGAG	1 cut(s)	1023
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	165, 243, 744, 784, 855
HhaI	GCGC	2 cut(s)	103, 344
Hin1II	CATG	9 cut(s)	170, 332, 440, 524, 743, 829, 860, 943, 1042
Hin6I	GCGC	2 cut(s)	101, 342
HinP1I	GCGC	2 cut(s)	101, 342
HindIII	AAGCTT	2 cut(s)	584, 977
HinfI	GANTC	4 cut(s)	295, 392, 799, 896
HphI	GGTGA	5 cut(s)	540, 690, 1143, 1180, 1411
Hpy166II	GTNNAC	2 cut(s)	261, 1402
Hpy188I	TCNGA	6 cut(s)	256, 485, 614, 667, 1028, 1134
Hpy188III	TCNNGA	8 cut(s)	197, 386, 533, 710, 826, 867, 953, 995
Hpy8I	GTNNAC	2 cut(s)	261, 1402
HpyAV	CCTTC	3 cut(s)	458, 629, 1036
HpyCH4IV	ACGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 231, 240, 249, 281, 341, 521, 861
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	9 cut(s)	170, 332, 440, 524, 743, 829, 860, 943, 1042
HspAI	GCGC	2 cut(s)	101, 342
Kzo9I	GATC	4 cut(s)	614, 673, 766, 820
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	4 cut(s)	23, 310, 485, 535
Lsp1109I	GCAGC	9 cut(s)	134, 158, 287, 337, 344, 499, 948, 1187, 1265
LweI	GCATC	4 cut(s)	312, 432, 658, 946
MaeI	CTAG	2 cut(s)	35, 350
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	457, 691
MalI	GATC	4 cut(s)	616, 675, 768, 822
MboI	GATC	4 cut(s)	614, 673, 766, 820
MlsI	TGGCCA	1 cut(s)	855
MluNI	TGGCCA	1 cut(s)	855
MlyI	GAGTC	2 cut(s)	386, 905
MmeI	TCCRAC	4 cut(s)	89, 427, 827, 1107
Mox20I	TGGCCA	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	855
MseI	TTAA	4 cut(s)	54, 72, 1227, 1313
MslI	CAYNNNNRTG	1 cut(s)	1037
Msp20I	TGGCCA	1 cut(s)	855
MspA1I	CMGCKG	2 cut(s)	1050, 1256
MspR9I	CCNGG	1 cut(s)	1211
MvaI	CCWGG	1 cut(s)	1211
MwoI	GCNNNNNNNGC	8 cut(s)	131, 231, 240, 249, 281, 341, 521, 861
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	614, 673, 766, 820
NlaIII	CATG	9 cut(s)	170, 332, 440, 524, 743, 829, 860, 943, 1042
NlaIV	GGNNCC	5 cut(s)	210, 312, 745, 1147, 1292
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	2 cut(s)	332, 440
NspV	TTCGAA	1 cut(s)	1020
PaeI	GCATGC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	825
PaqCI	CACCTGC	2 cut(s)	130, 559
PciSI	GCTCTTC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	295, 799
PfoI	TCCNGGA	1 cut(s)	1209
PleI	GAGTC	2 cut(s)	386, 904
PpsI	GAGTC	2 cut(s)	386, 904
PpuMI	RGGWCCY	2 cut(s)	1145, 1290
PshBI	ATTAAT	1 cut(s)	1313
Psp5II	RGGWCCY	2 cut(s)	1145, 1290
Psp6I	CCWGG	1 cut(s)	1209
PspFI	CCCAGC	2 cut(s)	356, 1050
PspGI	CCWGG	1 cut(s)	1209
PspN4I	GGNNCC	5 cut(s)	210, 312, 745, 1147, 1292
PspPI	GGNCC	6 cut(s)	111, 242, 743, 1045, 1145, 1290
PspPPI	RGGWCCY	2 cut(s)	1145, 1290
PspXI	VCTCGAGB	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	1 cut(s)	931
RsaNI	GTAC	1 cut(s)	930
RseI	CAYNNNNRTG	1 cut(s)	1037
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	54, 72, 1227, 1313
Sau3AI	GATC	4 cut(s)	614, 673, 766, 820
Sau96I	GGNCC	6 cut(s)	111, 242, 743, 1045, 1145, 1290
SchI	GAGTC	2 cut(s)	386, 905
ScrFI	CCNGG	1 cut(s)	1211
SfaNI	GCATC	4 cut(s)	312, 432, 658, 946
SfcI	CTRYAG	2 cut(s)	513, 1097
Sfr274I	CTCGAG	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	1020
SinI	GGWCC	4 cut(s)	111, 1045, 1145, 1290
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	332
SsiI	CCGC	6 cut(s)	455, 785, 917, 1048, 1239, 1264
SspI	AATATT	2 cut(s)	473, 1118
SspMI	CTAG	2 cut(s)	35, 350
StyD4I	CCNGG	1 cut(s)	1209
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	4 cut(s)	414, 868, 984, 1020
TatI	WGTACW	1 cut(s)	929
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	2 cut(s)	295, 799
Tru1I	TTAA	4 cut(s)	54, 72, 1227, 1313
Tru9I	TTAA	4 cut(s)	54, 72, 1227, 1313
TscAI	CASTG	4 cut(s)	466, 624, 856, 888
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	9 cut(s)	122, 146, 275, 325, 332, 512, 936, 1200, 1253
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	509, 728, 1055, 1206
TspGWI	ACGGA	5 cut(s)	101, 252, 416, 617, 1262
TspRI	CASTG	4 cut(s)	466, 624, 856, 888
VpaK11BI	GGWCC	4 cut(s)	111, 1045, 1145, 1290
VspI	ATTAAT	1 cut(s)	1313
XapI	RAATTY	2 cut(s)	538, 1022
XceI	RCATGY	2 cut(s)	332, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1161
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	2 cut(s)	35, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.