Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

12396397 .. 12398418

Gene Structure 2022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGATGCAGAAGAAGCTACTTCTTATAGTATCAATCATCTTGAATCTCGTATTCACCATTCATATTCTTTATTATAGTTCAACCACATGGAATCCAACGTGGACCAACAGAGCTGCAGCGGAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTTTTGTGGATGGTCTTGGTGTCCTTGACGGCCAGAAACCTCCTTGTGAGTGCAACAATTGCTACATAGGAAAAGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTTCTTGGAGCCTTTCTGGATGCGACAAGCAGAGAGAAGCGCGATTTTGGTCTCGGGATGGCACAGGATGAGTTATATATACGAAGATGGGACATATGTGTCTCGAGAGCTCGAGAAGGTCATTAGAAAACTTCATAGTGTAGTGGGAAATGCAGTTACAGATAACAGATTCGTAATCTTTGGATCTGGTACCACACAATTGCTTGCAGCAGCTGTTCATGCCTTGTCTTTGACAAACTCATCAGTATCATCACCTGCAAGACTTCTGACTTCTATTCCATACTATGCTATGTACAAGGACCAAGCAGAGTTTTTTGATTCAGCACATCTCAAGTTTGAAGGAAATGCGTCTGCGTGGAAGCAGAGCGGACGCAATGATAATATCACACAAGTTATAGAGGTGGTGACATCTCCGAATAATCCAGATGGGAAATTGAAAAGAGCGGTTCTTGATGGTCCTAATGTGAAAACACTTCATGATTATGCTTATTACTGGCCTCATTTCTCACCTATTACACATCCAGTTGATGAAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGTTCAAGATTCGGGTGGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGATAGATTTATACGTTTAACTAGTATGGGAGTTTCTAAAGAAACACAGCTTCATGTTCTTCAGTTGCTCAAAGTAGTAGTTGGTGATGGAGGCAATGAGATATTCAGTTTTGGTTATGGAACTGTGAAGAAAAGATGGGAGACACTGAACAAGATCTTCTCCATGTCCACGCGTTTCTCGCTCCAGACAATCAAACCTGAGTACTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACCAGAAGACACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAGGACGCAATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCAGATCACAAGATGACTTTGATCAGCTTATTGCTATGTTGAAGAAGTTAGTTTACCATGAGGAAGATGTTCCTTCTGAAAACTTTATGTATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

463

Amino Acids

52.43

Weight (kDa)

7.97

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alliinase_C	PF04864	1 - 344	1.4e-155	Allinase
Aminotran_1_2	PF00155	27 - 220	8.1e-07	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AasI	GACNNNNNNGTC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	559
Acc65I	GGTACC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	485
AccBSI	CCGCTC	3 cut(s)	663, 740, 1226
AccII	CGCG	2 cut(s)	338, 1096
AciI	CCGC	4 cut(s)	119, 663, 740, 1226
AclWI	GGATC	2 cut(s)	487, 1270
AcoI	YGGCCR	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	968
AfaI	GTAC	3 cut(s)	487, 590, 1127
AflIII	ACRYGT	1 cut(s)	1094
AgsI	TTSAA	7 cut(s)	43, 81, 635, 733, 876, 1141, 1336
AhdI	GACNNNNNGTC	1 cut(s)	861
AhlI	ACTAGT	1 cut(s)	944
AluBI	AGCT	8 cut(s)	16, 113, 167, 406, 509, 908, 973, 1321
AluI	AGCT	8 cut(s)	16, 113, 167, 406, 509, 908, 973, 1321
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	7 cut(s)	282, 352, 402, 851, 1058, 1183, 1295
AlwI	GGATC	2 cut(s)	487, 1270
AlwNI	CAGNNNCTG	2 cut(s)	131, 509
Ama87I	CYCGRG	3 cut(s)	349, 399, 407
AoxI	GGCC	3 cut(s)	154, 196, 791
ApeKI	GCWGC	4 cut(s)	113, 116, 503, 506
Asp700I	GAANNNNTTC	1 cut(s)	1362
Asp718I	GGTACC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	102, 595, 752
AsuHPI	GGTGA	6 cut(s)	46, 540, 712, 795, 1019, 1189
AvaI	CYCGRG	3 cut(s)	349, 399, 407
AvaII	GGWCC	3 cut(s)	102, 595, 752
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	408
BarI	GAAGNNNNNNTAC	2 cut(s)	1331, 1363
BbsI	GAAGAC	1 cut(s)	1203
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	100, 128, 515, 518
BccI	CCATC	7 cut(s)	170, 348, 377, 716, 743, 1004, 1053
BceAI	ACGGC	2 cut(s)	175, 211
BclI	TGATCA	1 cut(s)	1315
BcoDI	GTCTC	7 cut(s)	282, 352, 402, 851, 1058, 1183, 1295
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	1 cut(s)	945
BfmI	CTRYAG	3 cut(s)	114, 132, 858
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	1077
BisI	GCNGC	5 cut(s)	114, 117, 504, 507, 1227
BlsI	GCNGC	5 cut(s)	115, 118, 505, 508, 1228
BmcAI	AGTACT	1 cut(s)	1127
Bme18I	GGWCC	3 cut(s)	102, 595, 752
BmeRI	GACNNNNNGTC	1 cut(s)	861
BmeT110I	CYCGRG	3 cut(s)	349, 399, 407
BmgT120I	GGNCC	3 cut(s)	102, 595, 752
BmiI	GGNNCC	2 cut(s)	306, 487
BmsI	GCATC	2 cut(s)	265, 306
BpiI	GAAGAC	1 cut(s)	1203
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	611
BsaI	GGTCTC	3 cut(s)	282, 352, 1183
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	794, 818
Bse3DI	GCAATG	4 cut(s)	676, 1024, 1252, 1258
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	5 cut(s)	181, 321, 359, 369, 814
BseMI	GCAATG	4 cut(s)	676, 1024, 1252, 1258
BseMII	CTCAG	3 cut(s)	165, 297, 1113
BseNI	ACTGG	2 cut(s)	794, 818
BseXI	GCAGC	4 cut(s)	100, 128, 515, 518
Bsh1236I	CGCG	2 cut(s)	338, 1096
BshFI	GGCC	3 cut(s)	156, 198, 793
BshNI	GGYRCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	3 cut(s)	349, 399, 407
BslFI	GGGAC	1 cut(s)	400
BsmAI	GTCTC	7 cut(s)	282, 352, 402, 851, 1058, 1183, 1295
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	156, 198, 793
Bso31I	GGTCTC	3 cut(s)	282, 352, 1183
BsoBI	CYCGRG	3 cut(s)	349, 399, 407
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
BspACI	CCGC	4 cut(s)	119, 663, 740, 1226
BspANI	GGCC	3 cut(s)	156, 198, 793
BspCNI	CTCAG	3 cut(s)	164, 296, 1114
BspFNI	CGCG	2 cut(s)	338, 1096
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	306, 487
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	487, 1270
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	3 cut(s)	282, 352, 1183
BsrBI	CCGCTC	3 cut(s)	663, 740, 1226
BsrDI	GCAATG	4 cut(s)	676, 1024, 1252, 1258
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	794, 818
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
Bst4CI	ACNGT	2 cut(s)	133, 1048
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	151, 283, 1122
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	5 cut(s)	181, 321, 359, 369, 814
BstFNI	CGCG	2 cut(s)	338, 1096
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	482, 1080, 1265, 1301, 1318
BstMAI	GTCTC	7 cut(s)	282, 352, 402, 851, 1058, 1183, 1295
BstMBI	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 122, 225, 515, 1102
BstSFI	CTRYAG	3 cut(s)	114, 132, 858
BstUI	CGCG	2 cut(s)	338, 1096
BstV1I	GCAGC	4 cut(s)	100, 128, 515, 518
BstV2I	GAAGAC	1 cut(s)	1203
BstX2I	RGATCY	2 cut(s)	479, 1077
BstYI	RGATCY	2 cut(s)	479, 1077
BsuRI	GGCC	3 cut(s)	156, 198, 793
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	5 cut(s)	181, 321, 359, 369, 814
BtsIMutI	CAGTG	1 cut(s)	1067
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	2 cut(s)	131, 509
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	102, 595, 752
CseI	GACGC	3 cut(s)	633, 675, 1251
Csp6I	GTAC	3 cut(s)	486, 589, 1126
CviAII	CATG	9 cut(s)	87, 147, 515, 773, 866, 977, 1087, 1173, 1352
CviQI	GTAC	3 cut(s)	486, 589, 1126
DdeI	CTNAG	3 cut(s)	151, 283, 1122
DpnI	GATC	5 cut(s)	481, 1079, 1264, 1300, 1317
DpnII	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
DrdI	GACNNNNNNGTC	1 cut(s)	394
DriI	GACNNNNNGTC	1 cut(s)	861
DseDI	GACNNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	861
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	3 cut(s)	282, 352, 1183
Eco47I	GGWCC	3 cut(s)	102, 595, 752
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	968
Eco88I	CYCGRG	3 cut(s)	349, 399, 407
EcoICRI	GAGCTC	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	1174
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	9 cut(s)	90, 150, 518, 776, 869, 980, 1090, 1176, 1355
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	9 cut(s)	86, 146, 514, 772, 865, 976, 1086, 1172, 1351
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	1315
Fnu4HI	GCNGC	5 cut(s)	114, 117, 504, 507, 1227
FokI	GGATG	5 cut(s)	188, 328, 366, 376, 801
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	5 cut(s)	114, 117, 504, 507, 1227
FspBI	CTAG	1 cut(s)	945
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	5 cut(s)	114, 117, 504, 507, 1227
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	3 cut(s)	156, 198, 793
HgaI	GACGC	3 cut(s)	633, 675, 1251
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	9 cut(s)	90, 150, 518, 776, 869, 980, 1090, 1176, 1355
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	6 cut(s)	43, 91, 465, 614, 879, 1288
HphI	GGTGA	6 cut(s)	46, 540, 712, 795, 1019, 1189
Hpy166II	GTNNAC	4 cut(s)	102, 1092, 1158, 1348
Hpy188I	TCNGA	6 cut(s)	564, 711, 1223, 1267, 1298, 1372
Hpy8I	GTNNAC	4 cut(s)	102, 1092, 1158, 1348
HpyAV	CCTTC	4 cut(s)	406, 629, 1173, 1377
HpyCH4III	ACNGT	2 cut(s)	133, 1048
HpyCH4IV	ACGT	2 cut(s)	98, 937
HpyCH4V	TGCA	8 cut(s)	7, 116, 219, 449, 503, 554, 1131, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 122, 225, 515, 1102
HpyF3I	CTNAG	3 cut(s)	151, 283, 1122
HpySE526I	ACGT	2 cut(s)	98, 937
Hsp92II	CATG	9 cut(s)	90, 150, 518, 776, 869, 980, 1090, 1176, 1355
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	1315
Kzo9I	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
LmnI	GCTCC	3 cut(s)	251, 304, 1110
Lsp1109I	GCAGC	4 cut(s)	100, 128, 515, 518
LweI	GCATC	2 cut(s)	265, 306
MaeI	CTAG	1 cut(s)	945
MaeII	ACGT	2 cut(s)	98, 937
MaeIII	GTNAC	2 cut(s)	451, 700
MalI	GATC	5 cut(s)	481, 1079, 1264, 1300, 1317
MbiI	CCGCTC	3 cut(s)	663, 740, 1226
MboI	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
MfeI	CAATTG	2 cut(s)	223, 494
MflI	RGATCY	2 cut(s)	479, 1077
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	223, 494, 728
MluI	ACGCGT	1 cut(s)	1094
MlyI	GAGTC	1 cut(s)	1297
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	148, 216, 688, 804, 1007, 1348
Mph1103I	ATGCAT	1 cut(s)	1174
MroXI	GAANNNNTTC	1 cut(s)	1362
MseI	TTAA	1 cut(s)	941
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	2 cut(s)	119, 509
MunI	CAATTG	2 cut(s)	223, 494
MvnI	CGCG	2 cut(s)	338, 1096
MwoI	GCNNNNNNNGC	5 cut(s)	13, 122, 225, 515, 1102
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
NlaIII	CATG	9 cut(s)	90, 150, 518, 776, 869, 980, 1090, 1176, 1355
NlaIV	GGNNCC	2 cut(s)	306, 487
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	1174
PaeR7I	CTCGAG	2 cut(s)	399, 407
PagI	TCATGA	1 cut(s)	772
PaqCI	CACCTGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	1362
PfeI	GAWTC	5 cut(s)	43, 91, 465, 614, 879
PkrI	GCNGC	5 cut(s)	115, 118, 505, 508, 1228
PleI	GAGTC	1 cut(s)	1296
PpsI	GAGTC	1 cut(s)	1296
Psp124BI	GAGCTC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	306, 487
PspPI	GGNCC	3 cut(s)	102, 595, 752
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	131, 509
PsuI	RGATCY	2 cut(s)	479, 1077
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	487, 590, 1127
RsaNI	GTAC	3 cut(s)	486, 589, 1126
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	941
SatI	GCNGC	5 cut(s)	114, 117, 504, 507, 1227
Sau3AI	GATC	5 cut(s)	479, 1077, 1262, 1298, 1315
Sau96I	GGNCC	3 cut(s)	102, 595, 752
ScaI	AGTACT	1 cut(s)	1127
SchI	GAGTC	1 cut(s)	1297
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	2 cut(s)	265, 306
SfcI	CTRYAG	3 cut(s)	114, 132, 858
Sfr274I	CTCGAG	2 cut(s)	399, 407
SinI	GGWCC	3 cut(s)	102, 595, 752
SlaI	CTCGAG	2 cut(s)	399, 407
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	3 cut(s)	399, 407, 626
SmoI	CTYRAG	3 cut(s)	399, 407, 626
SpeI	ACTAGT	1 cut(s)	944
Sse9I	AATT	3 cut(s)	223, 494, 728
SsiI	CCGC	4 cut(s)	119, 663, 740, 1226
SspMI	CTAG	1 cut(s)	945
SstI	GAGCTC	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	133, 1048
TaiI	ACGT	2 cut(s)	101, 940
TaqI	TCGA	3 cut(s)	273, 400, 408
TasI	AATT	3 cut(s)	223, 494, 728
TatI	WGTACW	2 cut(s)	588, 1125
TauI	GCSGC	1 cut(s)	1229
TfiI	GAWTC	5 cut(s)	43, 91, 465, 614, 879
Tru1I	TTAA	1 cut(s)	941
Tru9I	TTAA	1 cut(s)	941
TscAI	CASTG	1 cut(s)	1074
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	4 cut(s)	113, 116, 503, 506
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	8 cut(s)	50, 135, 419, 503, 761, 840, 930, 965
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	1074
VpaK11BI	GGWCC	3 cut(s)	102, 595, 752
XhoI	CTCGAG	2 cut(s)	399, 407
XmnI	GAANNNNTTC	1 cut(s)	1362
XspI	CTAG	1 cut(s)	945
ZrmI	AGTACT	1 cut(s)	1127
Zsp2I	ATGCAT	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.