RLG00000013574

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001908
Physical Location & Seq
Reverse (-)
33414186 .. 33416171
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013574

Sequence Viewer

Length: 1059 bp
ATGGGCTATACTTTCTCTGATCATGCTTACATCTCACAAGAGCTTGAGAGGCTCATCCGCAAAGTACACGACATTGCTGGCAATGCAGTCACTCAAGGAAGGCACATTGTAATTGGTGCCGGCTCAACCCATCTCCTCAATGCTGCAGTTAAAGCGCTCTCTTCCTCATCGACCAATAGTTTCAACTCATCATCATCCTCACCCGCTAGTATTGTTGTTTCAATTCCTTATTACGCGCTTTATGAAGCGCAAACGGAATACTTCCGATCAGTGGATTACAAGTTTGAAGGGGATGGTTCGTTGCTGCAGAACATCACAGATGGAACTAAGAGGGTTATTGAGTTTGTAACCGCACCAAACAATCCTGATGGGAAGCTAAATAAAGCAAATTTTCAAGGACCAAATTCCGAAGCAATCTATGATCGTGTTTATTATTGGCCACATTTCACACCAATTCCAATTCCAGCAAATGACAATGTCATGGTGTTTTCAATCTCCAAGCTCACTGGCCATGCTGGTACAAGATTAGGGTGGGCAGTGATAAAGGATGAGGAAGTGTACCAAAGAATGTTGCAGTATACTCTGACAAGTAACTTGGGTATTTCTCGCGATGCTCAGCTAAGAGCTTTGAAGCTTTTGAAAGTAGTCGTAGAAGGTGGAGGAAAAGAAATTTTCCAATTCGGATACACCACTATGAGGAAACGTTGGGAAAATTTGAGTAACGCCCTGTCTGTGTCAAACCGCTTTTCTCTGCAGAAAGTTGAACCTCAGTACTGCACTTTTTTCCAGAAAATTAGAGGACCATCTCCTGCCTATGCGTGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTACACAGTCCTCAAAGAAGAAGCTAATGTTTACGGCCGTAGTGGAAGTGTATTTGGTGCTGAAGATCGATATGTACGTCTCGCACTCATAAGGAGCCAAGATGATTTCGATATATTGCTTTACCGACTGAACCAGTTAGTCTCCAAGGAAGATGCACAGCCCCAAATTCATATGAAAAATGTGGCAAACCCATCACGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

353

Amino Acids

39.65

Weight (kDa)

8.54

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 2 - 332 6.2e-127 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 578
AccII CGCG 2 cut(s) 236, 609
AciI CCGC 4 cut(s) 58, 204, 351, 742
AclI AACGTT 1 cut(s) 703
AcoI YGGCCR 3 cut(s) 437, 508, 889
AcsI RAATTY 5 cut(s) 388, 403, 669, 712, 1020
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 5 cut(s) 66, 520, 560, 773, 930
AfeI AGCGCT 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 271, 696, 819
AgsI TTSAA 8 cut(s) 184, 222, 287, 395, 492, 631, 640, 764
AluBI AGCT 7 cut(s) 43, 376, 502, 619, 626, 634, 878
AluI AGCT 7 cut(s) 43, 376, 502, 619, 626, 634, 878
Alw26I GTCTC 2 cut(s) 938, 1000
Aor51HI AGCGCT 1 cut(s) 156
AoxI GGCC 3 cut(s) 437, 508, 889
ApeKI GCWGC 2 cut(s) 143, 304
ApoI RAATTY 5 cut(s) 388, 403, 669, 712, 1020
AspLEI GCGC 3 cut(s) 157, 238, 250
AspS9I GGNCC 2 cut(s) 398, 800
AsuHPI GGTGA 2 cut(s) 192, 835
AvaII GGWCC 2 cut(s) 398, 800
BalI TGGCCA 2 cut(s) 439, 510
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 130, 291
BccI CCATC 6 cut(s) 138, 287, 314, 362, 811, 1054
BceAI ACGGC 2 cut(s) 876, 904
BciVI GTATCC 1 cut(s) 677
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 938, 1000
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 3 cut(s) 144, 305, 752
BfoI RGCGCY 1 cut(s) 158
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 2 cut(s) 144, 305
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 2 cut(s) 145, 306
BmcAI AGTACT 1 cut(s) 773
Bme18I GGWCC 2 cut(s) 398, 800
BmgT120I GGNCC 2 cut(s) 398, 800
BmiI GGNNCC 2 cut(s) 118, 950
BmsI GCATC 2 cut(s) 601, 997
Bpu1102I GCTNAGC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 65, 78
Bsa29I ATCGAT 1 cut(s) 922
BsaJI CCNNGG 1 cut(s) 999
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 696, 819
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 511, 988
Bse3DI GCAATG 2 cut(s) 72, 88
BseCI ATCGAT 1 cut(s) 922
BseDI CCNNGG 1 cut(s) 999
BseGI GGATG 4 cut(s) 54, 194, 298, 553
BseLI CCNNNNNNNGG 3 cut(s) 271, 696, 819
BseMI GCAATG 2 cut(s) 72, 88
BseMII CTCAG 2 cut(s) 629, 782
BseNI ACTGG 2 cut(s) 511, 988
BseRI GAGGAG 1 cut(s) 125
BseX3I CGGCCG 1 cut(s) 889
BseXI GCAGC 2 cut(s) 130, 291
BsgI GTGCAG 1 cut(s) 760
Bsh1236I CGCG 2 cut(s) 236, 609
Bsh1285I CGRYCG 1 cut(s) 892
BshFI GGCC 3 cut(s) 439, 510, 891
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 922
BsiEI CGRYCG 1 cut(s) 892
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 3 cut(s) 271, 696, 819
BsmAI GTCTC 2 cut(s) 938, 1000
BsmBI CGTCTC 1 cut(s) 938
BsnI GGCC 3 cut(s) 439, 510, 891
Bsp143I GATC 4 cut(s) 19, 266, 421, 919
Bsp1720I GCTNAGC 1 cut(s) 615
Bsp68I TCGCGA 1 cut(s) 609
BspACI CCGC 4 cut(s) 58, 204, 351, 742
BspANI GGCC 3 cut(s) 439, 510, 891
BspCNI CTCAG 2 cut(s) 628, 781
BspDI ATCGAT 1 cut(s) 922
BspFNI CGCG 2 cut(s) 236, 609
BspLI GGNNCC 2 cut(s) 118, 950
BspMAI CTGCAG 3 cut(s) 148, 309, 756
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 72, 88
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 511, 988
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 999
BssMI GATC 4 cut(s) 19, 266, 421, 919
BssNAI GTATAC 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 999
Bst1107I GTATAC 1 cut(s) 579
Bst4CI ACNGT 1 cut(s) 862
Bst6I CTCTTC 2 cut(s) 166, 834
BstC8I GCNNGC 2 cut(s) 79, 121
BstDEI CTNAG 5 cut(s) 327, 615, 620, 768, 1056
BstF5I GGATG 4 cut(s) 54, 194, 298, 553
BstFNI CGCG 2 cut(s) 236, 609
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 3 cut(s) 157, 238, 250
BstKTI GATC 4 cut(s) 22, 269, 424, 922
BstMAI GTCTC 2 cut(s) 938, 1000
BstMBI GATC 4 cut(s) 19, 266, 421, 919
BstMCI CGRYCG 1 cut(s) 892
BstMWI GCNNNNNNNGC 3 cut(s) 49, 83, 152
BstSFI CTRYAG 3 cut(s) 144, 305, 752
BstUI CGCG 2 cut(s) 236, 609
BstV1I GCAGC 2 cut(s) 130, 291
BstZ17I GTATAC 1 cut(s) 579
BstZI CGGCCG 1 cut(s) 889
Bsu15I ATCGAT 1 cut(s) 922
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 3 cut(s) 439, 510, 891
BsuTUI ATCGAT 1 cut(s) 922
BtgZI GCGATG 1 cut(s) 624
BtsCI GGATG 4 cut(s) 54, 194, 298, 553
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 276, 504, 543
BtuMI TCGCGA 1 cut(s) 609
Cac8I GCNNGC 2 cut(s) 79, 121
CfoI GCGC 3 cut(s) 157, 238, 250
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 398, 800
ClaI ATCGAT 1 cut(s) 922
Csp6I GTAC 5 cut(s) 65, 519, 559, 772, 929
CviAII CATG 3 cut(s) 23, 481, 512
CviQI GTAC 5 cut(s) 65, 519, 559, 772, 929
DdeI CTNAG 5 cut(s) 327, 615, 620, 768, 1056
DpnI GATC 4 cut(s) 21, 268, 423, 921
DpnII GATC 4 cut(s) 19, 266, 421, 919
EaeI YGGCCR 3 cut(s) 437, 508, 889
EagI CGGCCG 1 cut(s) 889
Eam1104I CTCTTC 2 cut(s) 166, 834
EarI CTCTTC 2 cut(s) 166, 834
EclXI CGGCCG 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 999
Eco47I GGWCC 2 cut(s) 398, 800
Eco47III AGCGCT 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 999
ErhI CCWWGG 1 cut(s) 999
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 3 cut(s) 26, 484, 515
FatI CATG 3 cut(s) 22, 480, 511
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 1026
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 144, 305
FokI GGATG 4 cut(s) 41, 181, 305, 560
Fsp4HI GCNGC 2 cut(s) 144, 305
FspBI CTAG 1 cut(s) 207
GlaI GCGC 3 cut(s) 156, 237, 249
GluI GCNGC 2 cut(s) 144, 305
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 3 cut(s) 439, 510, 891
HapII CCGG 1 cut(s) 120
HhaI GCGC 3 cut(s) 157, 238, 250
Hin1II CATG 3 cut(s) 26, 484, 515
Hin6I GCGC 3 cut(s) 155, 236, 248
HinP1I GCGC 3 cut(s) 155, 236, 248
HindIII AAGCTT 1 cut(s) 632
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 192, 835
Hpy166II GTNNAC 4 cut(s) 67, 559, 579, 886
Hpy188I TCNGA 5 cut(s) 19, 266, 409, 585, 683
Hpy188III TCNNGA 3 cut(s) 365, 608, 787
Hpy8I GTNNAC 4 cut(s) 67, 559, 579, 886
HpyAV CCTTC 3 cut(s) 93, 281, 647
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 3 cut(s) 703, 931, 1051
HpyCH4V TGCA 7 cut(s) 86, 146, 307, 574, 754, 777, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 83, 152
HpyF3I CTNAG 5 cut(s) 327, 615, 620, 768, 1056
HpySE526I ACGT 3 cut(s) 703, 931, 1051
Hsp92II CATG 3 cut(s) 26, 484, 515
HspAI GCGC 3 cut(s) 155, 236, 248
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 266, 421, 919
LmnI GCTCC 1 cut(s) 948
Lsp1109I GCAGC 2 cut(s) 130, 291
LweI GCATC 2 cut(s) 601, 997
MaeI CTAG 1 cut(s) 207
MaeII ACGT 3 cut(s) 703, 931, 1051
MaeIII GTNAC 4 cut(s) 88, 346, 590, 719
MalI GATC 4 cut(s) 21, 268, 423, 921
MboI GATC 4 cut(s) 19, 266, 421, 919
MboII GAAGA 5 cut(s) 153, 851, 884, 929, 1016
MlsI TGGCCA 2 cut(s) 439, 510
MluNI TGGCCA 2 cut(s) 439, 510
Mox20I TGGCCA 2 cut(s) 439, 510
MroNI GCCGGC 1 cut(s) 119
MscI TGGCCA 2 cut(s) 439, 510
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 692
Msp20I TGGCCA 2 cut(s) 439, 510
MspI CCGG 1 cut(s) 120
MvnI CGCG 2 cut(s) 236, 609
MwoI GCNNNNNNNGC 3 cut(s) 49, 83, 152
NaeI GCCGGC 1 cut(s) 121
NdeI CATATG 1 cut(s) 1026
NdeII GATC 4 cut(s) 19, 266, 421, 919
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 26, 484, 515
NlaIV GGNNCC 2 cut(s) 118, 950
NmuCI GTSAC 1 cut(s) 88
NruI TCGCGA 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PdiI GCCGGC 1 cut(s) 121
PflFI GACNNNGTC 1 cut(s) 476
PkrI GCNGC 2 cut(s) 145, 306
Psp1406I AACGTT 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 118, 950
PspPI GGNCC 2 cut(s) 398, 800
PstI CTGCAG 3 cut(s) 148, 309, 756
PsyI GACNNNGTC 1 cut(s) 476
RruI TCGCGA 1 cut(s) 609
RsaI GTAC 5 cut(s) 66, 520, 560, 773, 930
RsaNI GTAC 5 cut(s) 65, 519, 559, 772, 929
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 144, 305
Sau3AI GATC 4 cut(s) 19, 266, 421, 919
Sau96I GGNCC 2 cut(s) 398, 800
ScaI AGTACT 1 cut(s) 773
SfaNI GCATC 2 cut(s) 601, 997
SfcI CTRYAG 3 cut(s) 144, 305, 752
SinI GGWCC 2 cut(s) 398, 800
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 44, 93
SmoI CTYRAG 2 cut(s) 44, 93
SsiI CCGC 4 cut(s) 58, 204, 351, 742
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 3 cut(s) 706, 934, 1054
TaqI TCGA 3 cut(s) 170, 922, 963
TatI WGTACW 2 cut(s) 64, 771
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 3 cut(s) 276, 511, 543
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 143, 304
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 258, 1013, 1043
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 276, 511, 543
Tth111I GACNNNGTC 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 398, 800
XapI RAATTY 5 cut(s) 388, 403, 669, 712, 1020
XmiI GTMKAC 1 cut(s) 578
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.