RLG00000013575

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001908
Physical Location & Seq
Reverse (-)
33416220 .. 33418020
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013575

Sequence Viewer

Length: 324 bp
ATGGCTAAGCTACAACAAAGCTCCTACGTTGTGTGCCTGGCATTTTCTATAGTTCTAAATCTGTCATTGATATTCAAGCTCTATGGACATGGAGGTCAGTGGGAGCTCAGTTGGAGCAGAAGGGCAGCAGAAGAAGCCGAGTACGTCGCCGCCGTCCCTTGCTCAGGGCATGGCAGAACCTACTTGGATGGCTTGGTTCTTGATGGCAAGCAACCCGCTTGTGAGTGCAATTCTTGCTATGGAGGCTCAGATTGTTCTCAGTTCTTAACTGATTGTGAATCAAATGCTGACGGCGGGGATCCATATTGCTTAGAGCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

108

Amino Acids

11.61

Weight (kDa)

4.49

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 37 - 92 7.4e-30 Alliinase EGF-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 93
AciI CCGC 3 cut(s) 150, 216, 294
AclWI GGATC 2 cut(s) 293, 306
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 10, 21, 79, 106
AluI AGCT 4 cut(s) 10, 21, 79, 106
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 2 cut(s) 293, 306
ApeKI GCWGC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 108, 318
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 182, 197
BceAI ACGGC 2 cut(s) 137, 307
BciT130I CCWGG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 126, 150
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 127, 151
Bme1390I CCNGG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 4 cut(s) 121, 177, 261, 272
BseXI GCAGC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 108, 318
Bsp143I GATC 1 cut(s) 298
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 3 cut(s) 150, 216, 294
BspCNI CTCAG 4 cut(s) 120, 176, 260, 271
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 2 cut(s) 293, 306
BssMI GATC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 6 cut(s) 6, 107, 163, 247, 258, 310
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 134, 234, 243
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 89, 170
CviJI RGCY 9 cut(s) 5, 10, 21, 79, 106, 137, 192, 246, 316
CviKI_1 RGCY 9 cut(s) 5, 10, 21, 79, 106, 137, 192, 246, 316
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 6 cut(s) 6, 107, 163, 247, 258, 310
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 2 cut(s) 108, 318
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 108, 318
FaeI CATG 2 cut(s) 92, 173
FaiI YATR 6 cut(s) 50, 84, 90, 171, 240, 304
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 88, 169
FauI CCCGC 2 cut(s) 223, 287
Fnu4HI GCNGC 2 cut(s) 126, 150
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 2 cut(s) 108, 318
Fsp4HI GCNGC 2 cut(s) 126, 150
GluI GCNGC 2 cut(s) 126, 150
Hin1II CATG 2 cut(s) 92, 173
HinfI GANTC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 2 cut(s) 27, 144
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 234, 243
HpyF3I CTNAG 6 cut(s) 6, 107, 163, 247, 258, 310
HpySE526I ACGT 2 cut(s) 27, 144
Hsp92II CATG 2 cut(s) 92, 173
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 3 cut(s) 26, 103, 114
LpnPI CCDG 3 cut(s) 23, 50, 150
Lsp1109I GCAGC 1 cut(s) 137
MaeII ACGT 2 cut(s) 27, 144
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 108, 318
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 86, 236
MseI TTAA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 134, 234, 243
NdeII GATC 1 cut(s) 298
NlaIII CATG 2 cut(s) 92, 173
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 127, 151
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 300
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 2 cut(s) 126, 150
Sau3AI GATC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 108, 318
SetI ASST 8 cut(s) 12, 23, 30, 81, 97, 108, 147, 182
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 1 cut(s) 229
SsiI CCGC 3 cut(s) 150, 216, 294
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 2 cut(s) 30, 147
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.