Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4210576 .. 4213995

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTAAGCCACAAAGCTCCTACCTTGTGTGCCTCGCATTTTCTTTAGTTTTCAATCTATTGTTGATCTTCAAACTATATGTGGGTAGAGAGTGGGAACTGAGCTGGAGCAGAAGGGCAGCAGAAGAAGCTGAGTATGTGGCAGCCATCTCTTGCTCAGGGCATGGAAGAGCCTACTTGGATGGGTTAACTCTTGATGGCAAGGAGCCTGTTTGTGAATGCAATTCTTGCTATGGAGGCCCTCAGTGCTCTGAGTTTTTGACTGGTTGTGCAGCAAATGCTGACAGTGGAGATCCATATTTCTTGGAGCCATTTTGGATGCAACATGCATCAAAAAGTGCACTTGTAGTAGCTGGTTGGCATCGAATGAGCTATACCTTTGCTGATCAATCTTACATCTCAGCAGAGCTTGAGAGGCACATTCGCAAACTTCATGCCATCGTTGGAAATGCCGTGACTGGAGGAAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCAGTTCATGCACTGTCTTCCCATAATTCAAGCTCCTCCTCCTCGCCTGCAAGTGTTGTAGCTTCAATTCCTTATTACAATCTTTACCAAATACAAACGGAGTTTTTTCGATCAACGGACTATGTATTTCGAGGAGATGCATCCTTATTGCAGAACATCTCAGATGCTACTAATGTTATTGAGTTTGTTACCTCACCAAACAATCCTGATGGCCAGCTGAATAAGGCAAATGTTCAAGGTCCAAATGCCAAAGCAATCTATGATCGTGTCTATTACTGGCCACATTTTACAGCAATTCCTACTCCAGCAAATGATGATATCATGATATTTTCAATTTCTAAGCTCACTGGCCATGCTGGTAGCAGATTCGGGTGGGCGGTGGTAAAGGATGAGTCTGTGTTCCAAAAGATGACCATGTATACGCTCATAAATAGCATGGGTATTTCTCGAGATGCTCAGCTGAGAGCCTTGAAGGTTTTGAATGTAGTCCTTGAAGGGGGAGGAAAGAATATTTTTGAATTCGGATATAACACTTTGAGGAAGCGTTGGGAAAAATTGAGCAACATCCTCTCTGTATCAAATCGCTTTAGTCTGCAAAAATTTGCACCCAAATACTGCACCTTTTTCAAGAAAACTAGAGGACCTTCACCAGCTTATGCATGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTATGCAGTCCTCCAAGAAGAAGCCAACGTTTACGGACGTAGAGGTTCTCATTTTGGCGCTGAAGATCGATTTGTGCGTCTCACCCTCTTAAGGAGCCAAGATGATTTTGATTTATTGCTTCAACGACTCAACCAATTAGTCTTGGAAGAAAGTCATCGGCAAAGCTATTTTGTCCACGATTTGAAGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

467

Amino Acids

52.35

Weight (kDa)

7.58

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	929
AciI	CCGC	1 cut(s)	887
AclI	AACGTT	1 cut(s)	1233
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	3 cut(s)	721, 788, 859
AcsI	RAATTY	2 cut(s)	1028, 1109
AcuI	CTGAAG	1 cut(s)	1287
AfiI	CCNNNNNNNGG	2 cut(s)	1006, 1296
AflII	CTTAAG	1 cut(s)	1294
Alw21I	GWGCWC	2 cut(s)	251, 343
Alw26I	GTCTC	1 cut(s)	1289
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	4 cut(s)	238, 721, 788, 859
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	119, 143, 272, 509
ApoI	RAATTY	2 cut(s)	1028, 1109
AspLEI	GCGC	1 cut(s)	1265
AspS9I	GGNCC	3 cut(s)	239, 749, 1151
AsuHPI	GGTGA	4 cut(s)	696, 1149, 1186, 1279
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	2 cut(s)	749, 1151
BaeGI	GKGCMC	1 cut(s)	343
BalI	TGGCCA	3 cut(s)	723, 790, 861
BbsI	GAAGAC	2 cut(s)	519, 1397
Bbv12I	GWGCWC	2 cut(s)	251, 343
BbvI	GCAGC	4 cut(s)	131, 155, 284, 496
BccI	CCATC	5 cut(s)	155, 176, 191, 446, 713
BceAI	ACGGC	1 cut(s)	437
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	1289
BfaI	CTAG	1 cut(s)	1146
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	1266
BfrI	CTTAAG	1 cut(s)	1294
BisI	GCNGC	4 cut(s)	120, 144, 273, 510
BlpI	GCTNAGC	2 cut(s)	6, 966
BlsI	GCNGC	4 cut(s)	121, 145, 274, 511
Bme18I	GGWCC	2 cut(s)	749, 1151
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	3 cut(s)	239, 749, 1151
BmiI	GGNNCC	3 cut(s)	207, 309, 1301
BmsI	GCATC	7 cut(s)	309, 338, 370, 637, 659, 664, 952
BpiI	GAAGAC	2 cut(s)	519, 1397
BpmI	CTGGAG	3 cut(s)	127, 480, 798
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	2 cut(s)	6, 966
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	1273
Bsc4I	CCNNNNNNNGG	2 cut(s)	1006, 1296
Bse1I	ACTGG	4 cut(s)	268, 463, 791, 862
BseCI	ATCGAT	1 cut(s)	1273
BseGI	GGATG	5 cut(s)	187, 324, 650, 904, 1074
BseLI	CCNNNNNNNGG	2 cut(s)	1006, 1296
BseMII	CTCAG	9 cut(s)	92, 123, 171, 243, 257, 414, 684, 962, 980
BseNI	ACTGG	4 cut(s)	268, 463, 791, 862
BseRI	GAGGAG	4 cut(s)	535, 538, 541, 657
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	131, 155, 284, 496
BsgI	GTGCAG	2 cut(s)	291, 1111
BshFI	GGCC	4 cut(s)	240, 723, 790, 861
BshVI	ATCGAT	1 cut(s)	1273
BsiHKAI	GWGCWC	2 cut(s)	251, 343
BsiHKCI	CYCGRG	1 cut(s)	957
BslI	CCNNNNNNNGG	2 cut(s)	1006, 1296
BsmAI	GTCTC	1 cut(s)	1289
BsmBI	CGTCTC	1 cut(s)	1289
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	240, 723, 790, 861
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	251, 343
Bsp143I	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
Bsp1720I	GCTNAGC	2 cut(s)	6, 966
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	4 cut(s)	240, 723, 790, 861
BspCNI	CTCAG	9 cut(s)	93, 124, 170, 244, 256, 413, 683, 963, 979
BspDI	ATCGAT	1 cut(s)	1273
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	207, 309, 1301
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	1294
BsrI	ACTGG	4 cut(s)	268, 463, 791, 862
BssMI	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
BssNAI	GTATAC	1 cut(s)	930
Bst1107I	GTATAC	1 cut(s)	930
Bst4CI	ACNGT	2 cut(s)	287, 525
Bst6I	CTCTTC	2 cut(s)	163, 1185
BstAFI	CTTAAG	1 cut(s)	1294
BstAPI	GCANNNNNTGC	3 cut(s)	228, 278, 518
BstC8I	GCNNGC	3 cut(s)	487, 558, 725
BstF5I	GGATG	5 cut(s)	187, 324, 650, 904, 1074
BstH2I	RGCGCY	1 cut(s)	1266
BstHHI	GCGC	1 cut(s)	1265
BstKTI	GATC	6 cut(s)	69, 295, 388, 623, 775, 1273
BstMAI	GTCTC	1 cut(s)	1289
BstMBI	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
BstNSI	RCATGY	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	343
BstV1I	GCAGC	4 cut(s)	131, 155, 284, 496
BstV2I	GAAGAC	2 cut(s)	519, 1397
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	1 cut(s)	930
Bsu15I	ATCGAT	1 cut(s)	1273
BsuRI	GGCC	4 cut(s)	240, 723, 790, 861
BsuTUI	ATCGAT	1 cut(s)	1273
BtsCI	GGATG	5 cut(s)	187, 324, 650, 904, 1074
BtsIMutI	CAGTG	4 cut(s)	251, 292, 521, 855
Cac8I	GCNNGC	3 cut(s)	487, 558, 725
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	1 cut(s)	1265
Cfr13I	GGNCC	3 cut(s)	239, 749, 1151
ClaI	ATCGAT	1 cut(s)	1273
CseI	GACGC	1 cut(s)	1271
CviAII	CATG	9 cut(s)	164, 326, 434, 518, 832, 863, 925, 946, 1170
DpnI	GATC	6 cut(s)	68, 294, 387, 622, 774, 1272
DpnII	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
EaeI	YGGCCR	3 cut(s)	721, 788, 859
Eam1104I	CTCTTC	2 cut(s)	163, 1185
EarI	CTCTTC	2 cut(s)	163, 1185
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	749, 1151
Eco57I	CTGAAG	1 cut(s)	1287
Eco88I	CYCGRG	1 cut(s)	957
EcoO109I	RGGNCCY	2 cut(s)	239, 1151
EcoRI	GAATTC	1 cut(s)	1028
EcoRV	GATATC	1 cut(s)	829
EcoT22I	ATGCAT	3 cut(s)	331, 652, 1171
Esp3I	CGTCTC	1 cut(s)	1289
FaeI	CATG	9 cut(s)	167, 329, 437, 521, 835, 866, 928, 949, 1173
FatI	CATG	9 cut(s)	163, 325, 433, 517, 831, 862, 924, 945, 1169
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	929
Fnu4HI	GCNGC	4 cut(s)	120, 144, 273, 510
FokI	GGATG	5 cut(s)	194, 331, 637, 911, 1061
Fsp4HI	GCNGC	4 cut(s)	120, 144, 273, 510
FspBI	CTAG	1 cut(s)	1146
GlaI	GCGC	1 cut(s)	1264
GluI	GCNGC	4 cut(s)	120, 144, 273, 510
GsuI	CTGGAG	3 cut(s)	127, 480, 798
HaeII	RGCGCY	1 cut(s)	1266
HaeIII	GGCC	4 cut(s)	240, 723, 790, 861
HgaI	GACGC	1 cut(s)	1271
HhaI	GCGC	1 cut(s)	1265
Hin1II	CATG	9 cut(s)	167, 329, 437, 521, 835, 866, 928, 949, 1173
Hin6I	GCGC	1 cut(s)	1263
HinP1I	GCGC	1 cut(s)	1263
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	876, 902, 1332
HpaI	GTTAAC	1 cut(s)	189
HphI	GGTGA	4 cut(s)	696, 1149, 1186, 1279
Hpy166II	GTNNAC	5 cut(s)	189, 341, 930, 1237, 1381
Hpy188I	TCNGA	3 cut(s)	253, 673, 1034
Hpy188III	TCNNGA	6 cut(s)	194, 716, 832, 957, 959, 1138
Hpy8I	GTNNAC	5 cut(s)	189, 341, 930, 1237, 1381
HpyAV	CCTTC	4 cut(s)	108, 976, 998, 1164
HpyCH4III	ACNGT	2 cut(s)	287, 525
HpyCH4IV	ACGT	2 cut(s)	1233, 1243
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
HpySE526I	ACGT	2 cut(s)	1233, 1243
Hsp92II	CATG	9 cut(s)	167, 329, 437, 521, 835, 866, 928, 949, 1173
HspAI	GCGC	1 cut(s)	1263
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	6 cut(s)	23, 108, 205, 307, 548, 1299
Lsp1109I	GCAGC	4 cut(s)	131, 155, 284, 496
LweI	GCATC	7 cut(s)	309, 338, 370, 637, 659, 664, 952
MaeI	CTAG	1 cut(s)	1146
MaeII	ACGT	2 cut(s)	1233, 1243
MaeIII	GTNAC	2 cut(s)	454, 697
MalI	GATC	6 cut(s)	68, 294, 387, 622, 774, 1272
MboI	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
MboII	GAAGA	9 cut(s)	61, 137, 180, 477, 519, 1202, 1235, 1280, 1364
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	251, 343
MlsI	TGGCCA	3 cut(s)	723, 790, 861
MluNI	TGGCCA	3 cut(s)	723, 790, 861
MlyI	GAGTC	2 cut(s)	911, 1326
MmeI	TCCRAC	1 cut(s)	424
Mox20I	TGGCCA	3 cut(s)	723, 790, 861
Mph1103I	ATGCAT	3 cut(s)	331, 652, 1171
MscI	TGGCCA	3 cut(s)	723, 790, 861
MseI	TTAA	2 cut(s)	188, 1295
Msp20I	TGGCCA	3 cut(s)	723, 790, 861
MspA1I	CMGCKG	2 cut(s)	727, 970
MspCI	CTTAAG	1 cut(s)	1294
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
NdeII	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
NlaIII	CATG	9 cut(s)	167, 329, 437, 521, 835, 866, 928, 949, 1173
NlaIV	GGNNCC	3 cut(s)	207, 309, 1301
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	3 cut(s)	331, 652, 1171
NspI	RCATGY	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	957
PagI	TCATGA	1 cut(s)	831
PciSI	GCTCTTC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	1279
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	4 cut(s)	121, 145, 274, 511
PleI	GAGTC	2 cut(s)	910, 1326
PpsI	GAGTC	2 cut(s)	910, 1326
PpuMI	RGGWCCY	1 cut(s)	1151
Psp1406I	AACGTT	1 cut(s)	1233
Psp5II	RGGWCCY	1 cut(s)	1151
PspN4I	GGNNCC	3 cut(s)	207, 309, 1301
PspPI	GGNCC	3 cut(s)	239, 749, 1151
PspPPI	RGGWCCY	1 cut(s)	1151
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	727, 970
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	188, 1295
SatI	GCNGC	4 cut(s)	120, 144, 273, 510
Sau3AI	GATC	6 cut(s)	66, 292, 385, 620, 772, 1270
Sau96I	GGNCC	3 cut(s)	239, 749, 1151
SchI	GAGTC	2 cut(s)	911, 1326
SduI	GDGCHC	2 cut(s)	251, 343
SfaNI	GCATC	7 cut(s)	309, 338, 370, 637, 659, 664, 952
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	957
SinI	GGWCC	2 cut(s)	749, 1151
SlaI	CTCGAG	1 cut(s)	957
SmlI	CTYRAG	3 cut(s)	410, 957, 1294
SmoI	CTYRAG	3 cut(s)	410, 957, 1294
SsiI	CCGC	1 cut(s)	887
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	1 cut(s)	1146
TaaI	ACNGT	2 cut(s)	287, 525
TaiI	ACGT	2 cut(s)	1236, 1246
TaqI	TCGA	5 cut(s)	364, 619, 640, 958, 1273
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	2 cut(s)	188, 1295
Tru9I	TTAA	2 cut(s)	188, 1295
TscAI	CASTG	4 cut(s)	251, 292, 528, 862
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	4 cut(s)	119, 143, 272, 509
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	422, 506
TspGWI	ACGGA	3 cut(s)	623, 641, 1254
TspRI	CASTG	4 cut(s)	251, 292, 528, 862
Vha464I	CTTAAG	1 cut(s)	1294
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	749, 1151
XapI	RAATTY	2 cut(s)	1028, 1109
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XhoI	CTCGAG	1 cut(s)	957
XmiI	GTMKAC	1 cut(s)	929
XspI	CTAG	1 cut(s)	1146
Zsp2I	ATGCAT	3 cut(s)	331, 652, 1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.