MD10G1035600.v1.1

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
4598854 .. 4604465
5612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1035600.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGGCTAAAGCACAAAGCTTCTACGCTGTGTGCTTAGCATTTTCTTTAGTGTTTAATCTATTGCTGAGCTTCAGACTCTATGTGGATGTGGGTGGAGATTGGGAGCTGAGTTGGAGCAAAAGAGCAGCAGAAGAAGCTGAGCACGTGGCAACCATCTCTTGCTCAGGGCATGGAAGAGCCTACTTAGATGGCCTAATTCTTGATGGGAAGGAACCTGTTTGTGAGTGCAATTCCTGCTATGGAGGCCATGACTGCTCTTTGTTTTTAACTGGATGTGCAGCAAACGCCGACAGTGGGGACCCGTATTTCTTGGAGCCTTTTTGGACGAAACATGCATCAAAAAGTGCAGTTTTAGTAGCAGGATGGCATCGAATGAGCTATGTCTTCCCTGATCAATCTCGCATCTCAGCAGAGCTTGAGAGGCACATCCGCGAAATTCATACCATTGTCGGAAATGCGGTCACTGAAGGGAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCAGTTAACGCACTGTCGACTTCCAATAACTTCAACTCTTCACCTTCAAGTGTTGTAGCTTCAATTCCTTATTACAGTCTTTACCAAATGCAAACGGAGTTCTTCCGATCAATGGACTACATGTTTCAGGGAGATGCTGCCTTGCTGCAGAACACTTCGGATGCTACTAAAAATGTTGTTGAGTTTGTAACCTCACCAAACAATCCAGATGGGCAGCTGAAGAAGGCAATTTTTGAAGGCCCGAATGCTAAAGCAATCTATGATCGTGTATACTACTGGCCACATTTTACAGCAATTCCTGCTCCAGCAGATGACGATCTCATGATATTTACAATTTCTAAGCTCACTGGCCATGCCGGTACTAGATTCGGGTGGGCATTGGTAAAGGATGAGTCTGTGTACCAAAGGATGACCCAGCATATACTCATGAGTAGCTTAGGTATTTCTCGAGATGCTCAGCTAAGAGCTTTGAAGCTTCTAAATGTCGTCCTTGAAACCGGAGGCAGGGAAATCTTTGAGTTCGGATACCACACTTTGAAGAAACGCTGGGAAAATTTGACAAACATCCTGTCTCTGTCAAACCGCTTTACTCTTCAAAAGTTTGAACCCAAATACTGCAACTTTTTCAAGAATATTAGAGACCCTTCACCAGCTTATGCATGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTATGAAGTTCTGAAACAAGAAGCGAATGTTTATGGTCGTCCAGGTGCTGAATTTGGAGCTGAAGATCGATATGTTCGTCTCACCCTCTTAAGGAACCAAGATGATTTTGATTTATTGCTTCAGCGACTCAACCAATTAGTCTTGGATGAAGGGAAGAGCAAAATAATTATTTCTTCTCAAGTAGGGGGTCAATACGTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

52.99

Weight (kDa)

5.82

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 37 - 92 1.7e-28 Alliinase EGF-like domain
Alliinase_C PF04864 94 - 451 1.5e-151 Allinase
Aminotran_1_2 PF00155 134 - 447 2.1e-08 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 533, 786
AccII CGCG 1 cut(s) 432
AciI CCGC 3 cut(s) 430, 458, 1099
AcoI YGGCCR 2 cut(s) 794, 865
AcsI RAATTY 3 cut(s) 435, 1069, 1262
AcuI CTGAAG 5 cut(s) 55, 486, 755, 1293, 1316
AcvI CACGTG 1 cut(s) 145
AfaI GTAC 2 cut(s) 877, 917
AfiI CCNNNNNNNGG 4 cut(s) 294, 628, 1020, 1302
AflII CTTAAG 1 cut(s) 1300
AflIII ACRYGT 1 cut(s) 636
AjnI CCWGG 1 cut(s) 1252
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 1092, 1149, 1295
AlwNI CAGNNNCTG 1 cut(s) 1259
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 5 cut(s) 190, 244, 754, 794, 865
ApeKI GCWGC 6 cut(s) 125, 278, 515, 653, 661, 730
ApoI RAATTY 3 cut(s) 435, 1069, 1262
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AspS9I GGNCC 2 cut(s) 298, 755
AsuHPI GGTGA 5 cut(s) 549, 702, 1155, 1192, 1285
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 2 cut(s) 796, 867
BbrPI CACGTG 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 6 cut(s) 137, 290, 502, 640, 648, 742
BccI CCATC 5 cut(s) 161, 182, 197, 357, 719
BciT130I CCWGG 1 cut(s) 1254
BciVI GTATCC 1 cut(s) 1034
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 1092, 1149, 1295
BfaI CTAG 1 cut(s) 879
BfmI CTRYAG 2 cut(s) 516, 662
BfrI CTTAAG 1 cut(s) 1300
BfuI GTATCC 1 cut(s) 1034
BisI GCNGC 6 cut(s) 126, 279, 516, 654, 662, 731
BlpI GCTNAGC 4 cut(s) 34, 65, 138, 972
BlsI GCNGC 6 cut(s) 127, 280, 517, 655, 663, 732
Bme1390I CCNGG 1 cut(s) 1254
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 2 cut(s) 298, 755
BmiI GGNNCC 5 cut(s) 213, 299, 300, 315, 1307
BmrFI CCNGG 1 cut(s) 1254
BmsI GCATC 6 cut(s) 344, 376, 411, 640, 667, 958
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 804
Bpu10I CCTNAGC 2 cut(s) 163, 952
Bpu1102I GCTNAGC 4 cut(s) 34, 65, 138, 972
BpuEI CTTGAG 2 cut(s) 437, 1374
Bsa29I ATCGAT 1 cut(s) 1279
BsaAI YACGTR 2 cut(s) 145, 1408
BsaBI GATNNNNATC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 1149
BsaWI WCCGGW 1 cut(s) 1013
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 628, 1020, 1302
Bse118I RCCGGY 1 cut(s) 872
Bse1I ACTGG 3 cut(s) 274, 797, 868
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 1 cut(s) 1254
BseCI ATCGAT 1 cut(s) 1279
BseGI GGATG 9 cut(s) 91, 278, 368, 426, 682, 910, 930, 1080, 1363
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 4 cut(s) 294, 628, 1020, 1302
BseMII CTCAG 6 cut(s) 56, 98, 129, 177, 420, 986
BseNI ACTGG 3 cut(s) 274, 797, 868
BseXI GCAGC 6 cut(s) 137, 290, 502, 640, 648, 742
BseYI CCCAGC 2 cut(s) 930, 1062
BsgI GTGCAG 2 cut(s) 297, 366
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 5 cut(s) 192, 246, 756, 796, 867
BshVI ATCGAT 1 cut(s) 1279
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 2 cut(s) 873, 1014
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 4 cut(s) 294, 628, 1020, 1302
BsmAI GTCTC 3 cut(s) 1092, 1149, 1295
BsmBI CGTCTC 1 cut(s) 1295
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 5 cut(s) 192, 246, 756, 796, 867
Bso31I GGTCTC 1 cut(s) 1149
BsoBI CYCGRG 1 cut(s) 963
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 5 cut(s) 391, 623, 778, 832, 1276
Bsp1720I GCTNAGC 4 cut(s) 34, 65, 138, 972
BspACI CCGC 3 cut(s) 430, 458, 1099
BspANI GGCC 5 cut(s) 192, 246, 756, 796, 867
BspCNI CTCAG 6 cut(s) 57, 99, 130, 176, 419, 985
BspDI ATCGAT 1 cut(s) 1279
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 2 cut(s) 837, 942
BspLI GGNNCC 5 cut(s) 213, 299, 300, 315, 1307
BspMAI CTGCAG 2 cut(s) 520, 666
BspQI GCTCTTC 2 cut(s) 169, 1361
BspTI CTTAAG 1 cut(s) 1300
BspTNI GGTCTC 1 cut(s) 1149
BsrFI RCCGGY 1 cut(s) 872
BsrI ACTGG 3 cut(s) 274, 797, 868
BssAI RCCGGY 1 cut(s) 872
BssMI GATC 5 cut(s) 391, 623, 778, 832, 1276
BssNAI GTATAC 1 cut(s) 787
Bst1107I GTATAC 1 cut(s) 787
Bst2UI CCWGG 1 cut(s) 1254
Bst4CI ACNGT 3 cut(s) 293, 531, 593
Bst6I CTCTTC 5 cut(s) 169, 559, 1113, 1191, 1361
BstAFI CTTAAG 1 cut(s) 1300
BstAPI GCANNNNNTGC 2 cut(s) 234, 815
BstBAI YACGTR 2 cut(s) 145, 1408
BstC8I GCNNGC 1 cut(s) 493
BstF5I GGATG 9 cut(s) 91, 278, 368, 426, 682, 910, 930, 1080, 1363
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 5 cut(s) 394, 626, 781, 835, 1279
BstMAI GTCTC 3 cut(s) 1092, 1149, 1295
BstMBI GATC 5 cut(s) 391, 623, 778, 832, 1276
BstMWI GCNNNNNNNGC 8 cut(s) 134, 234, 243, 252, 284, 421, 524, 815
BstNI CCWGG 1 cut(s) 1254
BstNSI RCATGY 2 cut(s) 335, 640
BstSCI CCNGG 1 cut(s) 1252
BstSFI CTRYAG 2 cut(s) 516, 662
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 6 cut(s) 137, 290, 502, 640, 648, 742
BstV2I GAAGAC 1 cut(s) 376
BstZ17I GTATAC 1 cut(s) 787
Bsu15I ATCGAT 1 cut(s) 1279
BsuI GTATCC 1 cut(s) 1034
BsuRI GGCC 5 cut(s) 192, 246, 756, 796, 867
BsuTUI ATCGAT 1 cut(s) 1279
BtsCI GGATG 9 cut(s) 91, 278, 368, 426, 682, 910, 930, 1080, 1363
BtsIMutI CAGTG 4 cut(s) 298, 462, 527, 861
Cac8I GCNNGC 1 cut(s) 493
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 2 cut(s) 837, 942
Cfr10I RCCGGY 1 cut(s) 872
Cfr13I GGNCC 2 cut(s) 298, 755
ClaI ATCGAT 1 cut(s) 1279
Csp6I GTAC 2 cut(s) 876, 916
CviAII CATG 8 cut(s) 170, 248, 332, 637, 838, 869, 943, 1176
CviQI GTAC 2 cut(s) 876, 916
DpnI GATC 5 cut(s) 393, 625, 780, 834, 1278
DpnII GATC 5 cut(s) 391, 623, 778, 832, 1276
EaeI YGGCCR 2 cut(s) 794, 865
Eam1104I CTCTTC 5 cut(s) 169, 559, 1113, 1191, 1361
EarI CTCTTC 5 cut(s) 169, 559, 1113, 1191, 1361
Eco31I GGTCTC 1 cut(s) 1149
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 5 cut(s) 55, 486, 755, 1293, 1316
Eco72I CACGTG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 963
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 1252
EcoT22I ATGCAT 2 cut(s) 337, 1177
Esp3I CGTCTC 1 cut(s) 1295
FaeI CATG 8 cut(s) 173, 251, 335, 640, 841, 872, 946, 1179
FaqI GGGAC 1 cut(s) 311
FatI CATG 8 cut(s) 169, 247, 331, 636, 837, 868, 942, 1175
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 2 cut(s) 533, 786
Fnu4HI GCNGC 6 cut(s) 126, 279, 516, 654, 662, 731
FokI GGATG 9 cut(s) 98, 285, 375, 413, 689, 917, 937, 1067, 1370
Fsp4HI GCNGC 6 cut(s) 126, 279, 516, 654, 662, 731
FspBI CTAG 1 cut(s) 879
GluI GCNGC 6 cut(s) 126, 279, 516, 654, 662, 731
GsaI CCCAGC 2 cut(s) 934, 1066
GsuI CTGGAG 1 cut(s) 804
HaeIII GGCC 5 cut(s) 192, 246, 756, 796, 867
HapII CCGG 2 cut(s) 873, 1014
Hin1II CATG 8 cut(s) 173, 251, 335, 640, 841, 872, 946, 1179
HincII GTYRAC 2 cut(s) 523, 534
HindII GTYRAC 2 cut(s) 523, 534
HindIII AAGCTT 2 cut(s) 16, 989
HinfI GANTC 4 cut(s) 75, 882, 908, 1338
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 2 cut(s) 873, 1014
HphI GGTGA 5 cut(s) 549, 702, 1155, 1192, 1285
Hpy166II GTNNAC 4 cut(s) 523, 534, 787, 916
Hpy188I TCNGA 6 cut(s) 74, 452, 623, 676, 1040, 1224
Hpy188III TCNNGA 7 cut(s) 200, 722, 838, 943, 963, 965, 1144
Hpy8I GTNNAC 4 cut(s) 523, 534, 787, 916
HpyAV CCTTC 7 cut(s) 202, 461, 570, 733, 746, 1170, 1355
HpyCH4III ACNGT 3 cut(s) 293, 531, 593
HpyCH4IV ACGT 2 cut(s) 144, 1407
HpyCH4V TGCA 9 cut(s) 228, 278, 335, 347, 518, 607, 664, 1134, 1175
HpyF10VI GCNNNNNNNGC 8 cut(s) 134, 234, 243, 252, 284, 421, 524, 815
HpySE526I ACGT 2 cut(s) 144, 1407
Hsp92II CATG 8 cut(s) 173, 251, 335, 640, 841, 872, 946, 1179
KflI GGGWCCC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 5 cut(s) 391, 623, 778, 832, 1276
LguI GCTCTTC 2 cut(s) 169, 1361
LmnI GCTCC 5 cut(s) 103, 114, 313, 823, 1268
Lsp1109I GCAGC 6 cut(s) 137, 290, 502, 640, 648, 742
LweI GCATC 6 cut(s) 344, 376, 411, 640, 667, 958
MaeI CTAG 1 cut(s) 879
MaeII ACGT 2 cut(s) 144, 1407
MaeIII GTNAC 3 cut(s) 460, 703, 1408
MalI GATC 5 cut(s) 393, 625, 780, 834, 1278
MboI GATC 5 cut(s) 391, 623, 778, 832, 1276
MhlI GDGCHC 1 cut(s) 144
MlsI TGGCCA 2 cut(s) 796, 867
MluNI TGGCCA 2 cut(s) 796, 867
MlyI GAGTC 3 cut(s) 69, 917, 1332
MmeI TCCRAC 2 cut(s) 92, 430
MnlI CCTC 7 cut(s) 236, 414, 718, 1010, 1185, 1192, 1307
Mox20I TGGCCA 2 cut(s) 796, 867
Mph1103I ATGCAT 2 cut(s) 337, 1177
MscI TGGCCA 2 cut(s) 796, 867
MseI TTAA 5 cut(s) 54, 266, 522, 1301, 1414
Msp20I TGGCCA 2 cut(s) 796, 867
MspA1I CMGCKG 1 cut(s) 733
MspCI CTTAAG 1 cut(s) 1300
MspI CCGG 2 cut(s) 873, 1014
MspR9I CCNGG 1 cut(s) 1254
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 1254
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 8 cut(s) 134, 234, 243, 252, 284, 421, 524, 815
NdeII GATC 5 cut(s) 391, 623, 778, 832, 1276
NlaIII CATG 8 cut(s) 173, 251, 335, 640, 841, 872, 946, 1179
NlaIV GGNNCC 5 cut(s) 213, 299, 300, 315, 1307
NmuCI GTSAC 2 cut(s) 460, 1408
NsiI ATGCAT 2 cut(s) 337, 1177
NspI RCATGY 2 cut(s) 335, 640
PaeR7I CTCGAG 1 cut(s) 963
PagI TCATGA 2 cut(s) 837, 942
PciI ACATGT 1 cut(s) 636
PciSI GCTCTTC 2 cut(s) 169, 1361
PcsI WCGNNNNNNNCGW 1 cut(s) 1285
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 1 cut(s) 882
PkrI GCNGC 6 cut(s) 127, 280, 517, 655, 663, 732
PleI GAGTC 3 cut(s) 69, 916, 1332
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 3 cut(s) 69, 916, 1332
Ppu21I YACGTR 2 cut(s) 145, 1408
PpuMI RGGWCCY 1 cut(s) 298
PscI ACATGT 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 1252
PspCI CACGTG 1 cut(s) 145
PspFI CCCAGC 2 cut(s) 930, 1062
PspGI CCWGG 1 cut(s) 1252
PspN4I GGNNCC 5 cut(s) 213, 299, 300, 315, 1307
PspPI GGNCC 2 cut(s) 298, 755
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 2 cut(s) 520, 666
PstNI CAGNNNCTG 1 cut(s) 1259
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 2 cut(s) 877, 917
RsaNI GTAC 2 cut(s) 876, 916
SalI GTCGAC 1 cut(s) 532
SapI GCTCTTC 2 cut(s) 169, 1361
SaqAI TTAA 5 cut(s) 54, 266, 522, 1301, 1414
SatI GCNGC 6 cut(s) 126, 279, 516, 654, 662, 731
Sau3AI GATC 5 cut(s) 391, 623, 778, 832, 1276
Sau96I GGNCC 2 cut(s) 298, 755
SchI GAGTC 3 cut(s) 69, 917, 1332
ScrFI CCNGG 1 cut(s) 1254
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 6 cut(s) 344, 376, 411, 640, 667, 958
SfcI CTRYAG 2 cut(s) 516, 662
Sfr274I CTCGAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 963
SmlI CTYRAG 4 cut(s) 416, 963, 1300, 1389
SmoI CTYRAG 4 cut(s) 416, 963, 1300, 1389
SsiI CCGC 3 cut(s) 430, 458, 1099
SspI AATATT 1 cut(s) 1150
SspMI CTAG 1 cut(s) 879
StyD4I CCNGG 1 cut(s) 1252
TaaI ACNGT 3 cut(s) 293, 531, 593
TaiI ACGT 2 cut(s) 147, 1410
TaqI TCGA 4 cut(s) 370, 533, 964, 1279
TfiI GAWTC 1 cut(s) 882
Tru1I TTAA 5 cut(s) 54, 266, 522, 1301, 1414
Tru9I TTAA 5 cut(s) 54, 266, 522, 1301, 1414
TscAI CASTG 4 cut(s) 298, 469, 534, 868
TseFI GTSAC 2 cut(s) 460, 1408
TseI GCWGC 6 cut(s) 125, 278, 515, 653, 661, 730
Tsp45I GTSAC 2 cut(s) 460, 1408
TspDTI ATGAA 3 cut(s) 428, 1230, 1374
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 4 cut(s) 298, 469, 534, 868
Vha464I CTTAAG 1 cut(s) 1300
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 3 cut(s) 435, 1069, 1262
XceI RCATGY 2 cut(s) 335, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 1173
XhoI CTCGAG 1 cut(s) 963
XmiI GTMKAC 2 cut(s) 533, 786
XspI CTAG 1 cut(s) 879
Zsp2I ATGCAT 2 cut(s) 337, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.