MD10G1035800.v1.1

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
4643726 .. 4646786
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1035800.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGGCTAAGGCACAAAGCTCCTACGCTGTTATCCTGGCATTTTCTTTACTTGTTAATCTATTGGTATATACGGATGGAGAGCGGGAACTGAGTTGGAGCAAAAGAGCAGCACAAGAAGCTGAGCAGGTGGCCGCCATCTCTTGCTCAGGCCATGGAAGAGCCTACTTGGACGGGTTGGTTCTTTATGGAATCAAACCTGTTTGTGAGTGCAATCCTTGCTATGGAGGTCCTGACTGCTCTACGTTTTCACGTAATTGTGCAGCAAATGCCGAAAATGGGGATCCATATTTCTTGGAGCCATTTTGGATGCAACGTGCAGCTAAAAGTGCAATTCTAGTAGCAGGGTGGCATAGAATGGGGTATAGCTTTCCTGATGGTTCTTACATATCAACACAGCTCGAGGCGAGCATCCATAAAGTACATGCCGTAGTTGGAAACGCGGTCACTAAAGGAAAATATATTATTTTTGGTGCTGGCTCAACCCACCTTCTCAACGCTGCAGTTCACGCACTTGCTCTTGAGAATAATTCCTCCTCACCTGCAACTGTTGTTGCTTCAATTCCTTACTACAGGCTTTACAAGACACAAACGGAATTTTTCAGATCAGTCGACTATCAGTTTGAAGGAGATGCAACATCATTGCAGAACATTTCAGATGCAGGCAACGTTATTGAGTTTGTAACCTCACCAAACAATCCAGATGGGAAGCTGAATAAGGCAGTACTTCAGGGCCCCAATTCCTCTGCGATCTACGATCGTGTCTATTATTGGCCACATTTTACAGCGATTCCAACTGCAGCAAATGATGATCTAATGATATTTTCACTTTCCAAGCTCACTGGCCATGCTGGTACAAGATTTGGATGGGCAGTGGTAAAGAATGAGTCTGTTTATCAAAGAATGACGGAATATATTAGTGAAAGCAGCAATGGCATTTCTCGGGATGCTCAGCTAAGGGCTTTGAAACTTCTGAATGTAGTTCTTGAAACTGGAGGCAGGGAAATCTTTGAATTCGGATACGACACTATGAAGAACCGCTGGGAAAAATTGACCAACACCCTGTCTGTTTCCAATCGCTTTTCTCTACAGAAAATTGAACCCCAATATTGCACTTATTTTCAGAAAATTAGAGAACCCTCACCAGCTTATGCGTGGGTGAAGTGCGAGAGGGAAGAAGATAAAGATTGCTACAAAATACTGGAAGAAGCAAAAGTTAATGGGCGTAGAGGTAGCGTGTATGCAGCTGAAGAGCGCTATGTCCGTCTCAGCCTAATAAGGAGCCAAGATGAGTTTGACATACTAATTCAGCGACTAAGCCAGTTGGTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

49.65

Weight (kDa)

6.48

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 31 - 86 6.3e-29 Alliinase EGF-like domain
Alliinase_C PF04864 88 - 442 6.3e-150 Allinase
Aminotran_1_2 PF00155 137 - 438 1.5e-08 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 115, 547
Acc36I ACCTGC 2 cut(s) 115, 547
AccBSI CCGCTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 440
AciI CCGC 4 cut(s) 82, 132, 440, 1036
AclI AACGTT 1 cut(s) 666
AclWI GGATC 2 cut(s) 275, 288
AcoI YGGCCR 3 cut(s) 129, 770, 841
AcsI RAATTY 2 cut(s) 593, 1010
AcuI CTGAAG 2 cut(s) 710, 1266
AfaI GTAC 3 cut(s) 420, 723, 853
AfeI AGCGCT 1 cut(s) 1253
AfiI CCNNNNNNNGG 2 cut(s) 221, 276
AgsI TTSAA 6 cut(s) 558, 623, 964, 986, 1010, 1097
AjnI CCWGG 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 1268
AlwI GGATC 2 cut(s) 275, 288
Ama87I CYCGRG 2 cut(s) 398, 939
Aor51HI AGCGCT 1 cut(s) 1253
AoxI GGCC 5 cut(s) 129, 148, 730, 770, 841
ApaI GGGCCC 1 cut(s) 734
ApeKI GCWGC 7 cut(s) 107, 260, 317, 497, 797, 924, 1241
ApoI RAATTY 2 cut(s) 593, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 1254
AspS9I GGNCC 3 cut(s) 227, 730, 731
AsuHPI GGTGA 4 cut(s) 528, 678, 1131, 1168
AvaI CYCGRG 2 cut(s) 398, 939
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 734
BalI TGGCCA 2 cut(s) 772, 843
BamHI GGATCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 734
BbvI GCAGC 7 cut(s) 119, 272, 329, 484, 809, 936, 1253
BccI CCATC 5 cut(s) 68, 143, 368, 695, 858
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 1010
BcoDI GTCTC 1 cut(s) 1268
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 4 cut(s) 498, 568, 795, 1085
BfoI RGCGCY 1 cut(s) 1255
BfuAI ACCTGC 2 cut(s) 115, 547
BfuI GTATCC 1 cut(s) 1010
BisI GCNGC 8 cut(s) 108, 132, 261, 318, 498, 798, 925, 1242
BlpI GCTNAGC 2 cut(s) 120, 948
BlsI GCNGC 8 cut(s) 109, 133, 262, 319, 499, 799, 926, 1243
BmcAI AGTACT 1 cut(s) 723
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 2 cut(s) 398, 939
BmgT120I GGNCC 3 cut(s) 227, 730, 731
BmiI GGNNCC 5 cut(s) 282, 297, 732, 733, 1280
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 5 cut(s) 297, 417, 619, 646, 934
BpmI CTGGAG 1 cut(s) 1011
Bpu10I CCTNAGC 3 cut(s) 6, 145, 953
Bpu1102I GCTNAGC 2 cut(s) 120, 948
BpuEI CTTGAG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 276
Bse1I ACTGG 4 cut(s) 844, 994, 1203, 1318
Bse3DI GCAATG 2 cut(s) 638, 934
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 5 cut(s) 79, 312, 408, 869, 949
BseLI CCNNNNNNNGG 2 cut(s) 221, 276
BseMI GCAATG 2 cut(s) 638, 934
BseMII CTCAG 5 cut(s) 80, 111, 159, 962, 1279
BseNI ACTGG 4 cut(s) 844, 994, 1203, 1318
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 7 cut(s) 119, 272, 329, 484, 809, 936, 1253
BseYI CCCAGC 1 cut(s) 1038
BsgI GTGCAG 2 cut(s) 279, 336
Bsh1236I CGCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 757
BshFI GGCC 5 cut(s) 131, 150, 732, 772, 843
BsiEI CGRYCG 1 cut(s) 757
BsiHKCI CYCGRG 2 cut(s) 398, 939
BslI CCNNNNNNNGG 2 cut(s) 221, 276
BsmAI GTCTC 1 cut(s) 1268
BsmBI CGTCTC 1 cut(s) 1268
BsnI GGCC 5 cut(s) 131, 150, 732, 772, 843
BsoBI CYCGRG 2 cut(s) 398, 939
Bsp120I GGGCCC 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 5 cut(s) 280, 602, 747, 754, 808
Bsp1720I GCTNAGC 2 cut(s) 120, 948
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 4 cut(s) 82, 132, 440, 1036
BspANI GGCC 5 cut(s) 131, 150, 732, 772, 843
BspCNI CTCAG 5 cut(s) 81, 112, 158, 961, 1278
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 5 cut(s) 282, 297, 732, 733, 1280
BspMAI CTGCAG 2 cut(s) 502, 799
BspMI ACCTGC 2 cut(s) 115, 547
BspPI GGATC 2 cut(s) 275, 288
BspQI GCTCTTC 2 cut(s) 151, 1242
BsrBI CCGCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 638, 934
BsrI ACTGG 4 cut(s) 844, 994, 1203, 1318
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 5 cut(s) 280, 602, 747, 754, 808
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 151, 1242
BstAPI GCANNNNNTGC 2 cut(s) 216, 266
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 406, 475, 661
BstDEI CTNAG 8 cut(s) 6, 89, 120, 145, 948, 953, 1265, 1313
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 5 cut(s) 79, 312, 408, 869, 949
BstFNI CGCG 1 cut(s) 440
BstH2I RGCGCY 1 cut(s) 1255
BstHHI GCGC 1 cut(s) 1254
BstKTI GATC 5 cut(s) 283, 605, 750, 757, 811
BstMAI GTCTC 1 cut(s) 1268
BstMBI GATC 5 cut(s) 280, 602, 747, 754, 808
BstMCI CGRYCG 1 cut(s) 757
BstMWI GCNNNNNNNGC 6 cut(s) 116, 216, 266, 326, 506, 930
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 4 cut(s) 498, 568, 795, 1085
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 7 cut(s) 119, 272, 329, 484, 809, 936, 1253
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 5 cut(s) 131, 150, 732, 772, 843
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 5 cut(s) 79, 312, 408, 869, 949
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 837, 876
BveI ACCTGC 2 cut(s) 115, 547
Cac8I GCNNGC 3 cut(s) 406, 475, 661
CfoI GCGC 1 cut(s) 1254
Cfr13I GGNCC 3 cut(s) 227, 730, 731
Csp6I GTAC 3 cut(s) 419, 722, 852
CviAII CATG 3 cut(s) 152, 422, 845
CviQI GTAC 3 cut(s) 419, 722, 852
DdeI CTNAG 8 cut(s) 6, 89, 120, 145, 948, 953, 1265, 1313
DpnI GATC 5 cut(s) 282, 604, 749, 756, 810
DpnII GATC 5 cut(s) 280, 602, 747, 754, 808
EaeI YGGCCR 3 cut(s) 129, 770, 841
Eam1104I CTCTTC 2 cut(s) 151, 1242
EarI CTCTTC 2 cut(s) 151, 1242
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 227
Eco47III AGCGCT 1 cut(s) 1253
Eco57I CTGAAG 2 cut(s) 710, 1266
Eco88I CYCGRG 2 cut(s) 398, 939
EcoO109I RGGNCCY 3 cut(s) 227, 730, 731
EcoRI GAATTC 1 cut(s) 1010
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 1268
FaeI CATG 3 cut(s) 155, 425, 848
FatI CATG 3 cut(s) 151, 421, 844
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 8 cut(s) 108, 132, 261, 318, 498, 798, 925, 1242
FokI GGATG 5 cut(s) 86, 319, 395, 876, 956
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 8 cut(s) 108, 132, 261, 318, 498, 798, 925, 1242
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 1253
GluI GCNGC 8 cut(s) 108, 132, 261, 318, 498, 798, 925, 1242
GsaI CCCAGC 1 cut(s) 1042
GsuI CTGGAG 1 cut(s) 1011
HaeII RGCGCY 1 cut(s) 1255
HaeIII GGCC 5 cut(s) 131, 150, 732, 772, 843
HhaI GCGC 1 cut(s) 1254
Hin1II CATG 3 cut(s) 155, 425, 848
Hin6I GCGC 1 cut(s) 1252
HinP1I GCGC 1 cut(s) 1252
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 189, 787, 884
HphI GGTGA 4 cut(s) 528, 678, 1131, 1168
Hpy166II GTNNAC 2 cut(s) 505, 610
Hpy188I TCNGA 5 cut(s) 602, 655, 972, 1016, 1122
Hpy188III TCNNGA 6 cut(s) 230, 371, 518, 698, 941, 983
Hpy8I GTNNAC 2 cut(s) 505, 610
HpyAV CCTTC 2 cut(s) 497, 617
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 4 cut(s) 242, 250, 313, 666
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 216, 266, 326, 506, 930
HpyF3I CTNAG 8 cut(s) 6, 89, 120, 145, 948, 953, 1265, 1313
HpySE526I ACGT 4 cut(s) 242, 250, 313, 666
Hsp92II CATG 3 cut(s) 155, 425, 848
HspAI GCGC 1 cut(s) 1252
Kzo9I GATC 5 cut(s) 280, 602, 747, 754, 808
LguI GCTCTTC 2 cut(s) 151, 1242
LmnI GCTCC 4 cut(s) 23, 96, 295, 1278
Lsp1109I GCAGC 7 cut(s) 119, 272, 329, 484, 809, 936, 1253
LweI GCATC 5 cut(s) 297, 417, 619, 646, 934
MaeI CTAG 1 cut(s) 335
MaeII ACGT 4 cut(s) 242, 250, 313, 666
MaeIII GTNAC 2 cut(s) 442, 679
MalI GATC 5 cut(s) 282, 604, 749, 756, 810
MbiI CCGCTC 1 cut(s) 82
MboI GATC 5 cut(s) 280, 602, 747, 754, 808
MboII GAAGA 6 cut(s) 168, 1042, 1184, 1187, 1214, 1259
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 734
MlsI TGGCCA 2 cut(s) 772, 843
MluNI TGGCCA 2 cut(s) 772, 843
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 3 cut(s) 74, 412, 815
Mox20I TGGCCA 2 cut(s) 772, 843
MscI TGGCCA 2 cut(s) 772, 843
MseI TTAA 2 cut(s) 54, 1215
Msp20I TGGCCA 2 cut(s) 772, 843
MspA1I CMGCKG 2 cut(s) 1038, 1244
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 6 cut(s) 116, 216, 266, 326, 506, 930
NcoI CCATGG 1 cut(s) 151
NdeII GATC 5 cut(s) 280, 602, 747, 754, 808
NlaIII CATG 3 cut(s) 155, 425, 848
NlaIV GGNNCC 5 cut(s) 282, 297, 732, 733, 1280
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 398
PaqCI CACCTGC 2 cut(s) 115, 547
PciSI GCTCTTC 2 cut(s) 151, 1242
PfeI GAWTC 2 cut(s) 189, 787
PkrI GCNGC 8 cut(s) 109, 133, 262, 319, 499, 799, 926, 1243
Ple19I CGATCG 1 cut(s) 757
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
Ppu21I YACGTR 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 1038
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 5 cut(s) 282, 297, 732, 733, 1280
PspOMI GGGCCC 1 cut(s) 730
PspPI GGNCC 3 cut(s) 227, 730, 731
PspPPI RGGWCCY 1 cut(s) 227
PspXI VCTCGAGB 1 cut(s) 398
PstI CTGCAG 2 cut(s) 502, 799
PsuI RGATCY 1 cut(s) 280
PvuI CGATCG 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 1244
RsaI GTAC 3 cut(s) 420, 723, 853
RsaNI GTAC 3 cut(s) 419, 722, 852
SalI GTCGAC 1 cut(s) 608
SapI GCTCTTC 2 cut(s) 151, 1242
SaqAI TTAA 2 cut(s) 54, 1215
SatI GCNGC 8 cut(s) 108, 132, 261, 318, 498, 798, 925, 1242
Sau3AI GATC 5 cut(s) 280, 602, 747, 754, 808
Sau96I GGNCC 3 cut(s) 227, 730, 731
ScaI AGTACT 1 cut(s) 723
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 734
SfaNI GCATC 5 cut(s) 297, 417, 619, 646, 934
SfcI CTRYAG 4 cut(s) 498, 568, 795, 1085
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 398, 518
SmoI CTYRAG 2 cut(s) 398, 518
SsiI CCGC 4 cut(s) 82, 132, 440, 1036
SspI AATATT 1 cut(s) 1106
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 4 cut(s) 245, 253, 316, 669
TaqI TCGA 2 cut(s) 399, 609
TatI WGTACW 2 cut(s) 418, 721
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 189, 787
Tru1I TTAA 2 cut(s) 54, 1215
Tru9I TTAA 2 cut(s) 54, 1215
TscAI CASTG 2 cut(s) 844, 876
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 7 cut(s) 107, 260, 317, 497, 797, 924, 1241
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 1043
TspGWI ACGGA 4 cut(s) 86, 605, 920, 1250
TspRI CASTG 2 cut(s) 844, 876
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 2 cut(s) 593, 1010
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 1149
XhoI CTCGAG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.