MD05G1033800.v1.1

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
5425335 .. 5428427
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1033800.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGGGTAAGGCACAATGCTCCTACGTTGTTATCCTAGCATGTTCTTTACTTGTTAATCTGTTGGTAGTTTTTAAATTACTCTATACGGATGGAGAGTGGGCGCTGAGTTGGACCAAAAGAGCAGCAGAACAAGCTGAGCAGGTGGCAGCCATCTCTTGCTCAGGCCATGGAAGAGCCTACTTGGACGGCCTGGTTCTTGATGGAAAGGAGCCTGTTTGTGAGTGCAATTCCTGCTACGGAGGCCCTGACTGCTCTGAGTTTACAACTGATTGTGCAGCAAATGCTGACAGTGGGAATCCATATTTCTTGGAGCCATTTTGGATGCAGCATGCAGCTAAAAGTGCAATTCTAGTAGCTGGGTGGCATAGAATGGGGTATACCTATCCTGATGACTCTTTCATATCAACACAGCTCGAGGCGAGCATCCATAAATTACATGCCGTTGTTGGAAATGCGGTCACTGAAGGAAAATATTTTGTTTTCGGAGCTGGCTCCACCCAACTTCTCAACGCTGCAGTTTATGCACTCGCTCCTGAGAATTCCTCCTCGCCTGCAAGTGTTGTTGCTTCAATTCCTTACTACAAGCTTTACGAGACACAAACAGAACTTTTCAGATCACTGGACTATCGGTTTGAAGGAGATGTATCATCATTGAAGAACATTTCAGATGCCGATCACGTTATTGAGTTTGTAACCTCACCAAACAATCCTGATGGGAAGCTGAATAAGGCAGTTCTTCATGGCCCCAATTTCTCTGCAATCTATGATCGTGTCTATTACTGGCCGCATTTTACAGCGATTCCAACTTCAGCAGATTATGATCTTATGATATTTTCACTTTCCAAGCTCACTGGCCATGCTGGTTCTCGATTTGGATGGGCGGTGATAAAGAATGAGTCTGTGTATCAAAGAATGGCGGAGTATATGAGTACAAGCAGCATGGGTGTTTCTCGGGATGCTCAGCTAAGAGCTCTGAAGCTTATCGATGTAGTTCTTGAAACTGGTGGCAGGGAAATCTTTGAATTCGGATACAACACCATGAAGGACCGCTGGGAAAAATTGACCAACACCCTGTCTGTTTCCAACCGATTTTCTCTACAGAAAATTGCACCCCAATATTGCACTTATTTTCAGAAAATTAGAGGACCCTCACCAGCTTATGCGTGGGTGAAGTGCGAGAGGGAAGAAGATGAAGATTGCTACAAAGTCATGGAAGAAGCAAAAGTTAATGGGCGTAGCGGTAGCGATTTTGCAGCTGAAACCCGCTATGTCCGTCTCAGCCTAATAAGGAGCCAAGATGACTTTGATGTATTAATTCAGCGACTAAGCGAGTTGGTCTTGGAAGAAAGACAACAACCGAGCTATGCAAACAACGTGTTAGACCTCAATAAGCCATTGGTGAACACCTTAAGGAGGGGTCTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

477

Amino Acids

53.27

Weight (kDa)

5.42

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_alliinase PF04863 36 - 91 2.7e-29 Alliinase EGF-like domain
Alliinase_C PF04864 93 - 446 4.8e-149 Allinase
Aminotran_1_2 PF00155 132 - 442 3.2e-07 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 377
AciI CCGC 7 cut(s) 455, 785, 881, 917, 1048, 1239, 1264
AcoI YGGCCR 2 cut(s) 782, 853
AcsI RAATTY 2 cut(s) 538, 1022
AcuI CTGAAG 3 cut(s) 483, 792, 995
AfaI GTAC 1 cut(s) 931
AfiI CCNNNNNNNGG 1 cut(s) 1413
AflII CTTAAG 1 cut(s) 1408
AflIII ACRYGT 1 cut(s) 1374
AgsI TTSAA 5 cut(s) 570, 635, 655, 998, 1022
AjnI CCWGG 1 cut(s) 189
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 2 cut(s) 587, 1280
Ama87I CYCGRG 2 cut(s) 413, 951
AoxI GGCC 6 cut(s) 163, 187, 241, 742, 782, 853
ApeKI GCWGC 8 cut(s) 122, 146, 275, 325, 332, 512, 936, 1253
ApoI RAATTY 2 cut(s) 538, 1022
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AseI ATTAAT 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 5 cut(s) 111, 242, 743, 1045, 1145
AsuHPI GGTGA 5 cut(s) 690, 895, 1143, 1180, 1411
AvaI CYCGRG 2 cut(s) 413, 951
AvaII GGWCC 3 cut(s) 111, 1045, 1145
BalI TGGCCA 1 cut(s) 855
BanII GRGCYC 1 cut(s) 973
BbsI GAAGAC 1 cut(s) 1412
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 8 cut(s) 134, 158, 287, 337, 344, 499, 948, 1265
BccI CCATC 5 cut(s) 83, 158, 194, 707, 870
BceAI ACGGC 2 cut(s) 202, 425
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 1022
BcoDI GTCTC 2 cut(s) 587, 1280
BfaI CTAG 2 cut(s) 35, 350
BfmI CTRYAG 2 cut(s) 513, 1097
BfoI RGCGCY 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 1408
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 1022
BisI GCNGC 9 cut(s) 123, 147, 276, 326, 333, 513, 785, 937, 1254
BlpI GCTNAGC 2 cut(s) 135, 960
BlsI GCNGC 9 cut(s) 124, 148, 277, 327, 334, 514, 786, 938, 1255
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 3 cut(s) 111, 1045, 1145
BmeT110I CYCGRG 2 cut(s) 413, 951
BmgT120I GGNCC 5 cut(s) 111, 242, 743, 1045, 1145
BmiI GGNNCC 6 cut(s) 210, 312, 493, 745, 1147, 1292
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 4 cut(s) 312, 432, 658, 946
BpiI GAAGAC 1 cut(s) 1412
BplI GAGNNNNNCTC 2 cut(s) 527, 559
Bpu10I CCTNAGC 1 cut(s) 160
Bpu1102I GCTNAGC 2 cut(s) 135, 960
Bsa29I ATCGAT 1 cut(s) 984
BsaBI GATNNNNATC 2 cut(s) 672, 819
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 1413
Bse1I ACTGG 4 cut(s) 624, 785, 856, 1006
Bse8I GATNNNNATC 2 cut(s) 672, 819
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 5 cut(s) 94, 327, 423, 881, 961
BseJI GATNNNNATC 2 cut(s) 672, 819
BseLI CCNNNNNNNGG 1 cut(s) 1413
BseMII CTCAG 7 cut(s) 95, 126, 174, 246, 525, 974, 1291
BseNI ACTGG 4 cut(s) 624, 785, 856, 1006
BseRI GAGGAG 1 cut(s) 535
BseXI GCAGC 8 cut(s) 134, 158, 287, 337, 344, 499, 948, 1265
BseYI CCCAGC 2 cut(s) 356, 1050
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 6 cut(s) 165, 189, 243, 744, 784, 855
BshVI ATCGAT 1 cut(s) 984
BsiHKAI GWGCWC 1 cut(s) 973
BsiHKCI CYCGRG 2 cut(s) 413, 951
BslI CCNNNNNNNGG 1 cut(s) 1413
BsmAI GTCTC 2 cut(s) 587, 1280
BsmBI CGTCTC 1 cut(s) 1280
BsnI GGCC 6 cut(s) 165, 189, 243, 744, 784, 855
BsoBI CYCGRG 2 cut(s) 413, 951
Bsp1286I GDGCHC 1 cut(s) 973
Bsp143I GATC 4 cut(s) 614, 673, 766, 820
Bsp1720I GCTNAGC 2 cut(s) 135, 960
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 7 cut(s) 455, 785, 881, 917, 1048, 1239, 1264
BspANI GGCC 6 cut(s) 165, 189, 243, 744, 784, 855
BspCNI CTCAG 7 cut(s) 96, 127, 173, 247, 526, 973, 1290
BspDI ATCGAT 1 cut(s) 984
BspLI GGNNCC 6 cut(s) 210, 312, 493, 745, 1147, 1292
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 1408
BsrI ACTGG 4 cut(s) 624, 785, 856, 1006
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 4 cut(s) 614, 673, 766, 820
BssNAI GTATAC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 1408
BstAPI GCANNNNNTGC 3 cut(s) 231, 281, 521
BstC8I GCNNGC 4 cut(s) 330, 421, 490, 552
BstDEI CTNAG 9 cut(s) 104, 135, 160, 255, 534, 960, 965, 1277, 1325
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 1411
BstF5I GGATG 5 cut(s) 94, 327, 423, 881, 961
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 4 cut(s) 617, 676, 769, 823
BstMAI GTCTC 2 cut(s) 587, 1280
BstMBI GATC 4 cut(s) 614, 673, 766, 820
BstMWI GCNNNNNNNGC 7 cut(s) 131, 231, 240, 249, 281, 341, 521
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 3 cut(s) 42, 332, 440
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 513, 1097
BstV1I GCAGC 8 cut(s) 134, 158, 287, 337, 344, 499, 948, 1265
BstV2I GAAGAC 1 cut(s) 1412
BstZ17I GTATAC 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 984
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 6 cut(s) 165, 189, 243, 744, 784, 855
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 5 cut(s) 94, 327, 423, 881, 961
BtsIMutI CAGTG 4 cut(s) 295, 459, 617, 849
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 330, 421, 490, 552
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 5 cut(s) 111, 242, 743, 1045, 1145
ClaI ATCGAT 1 cut(s) 984
Csp6I GTAC 1 cut(s) 930
CviAII CATG 9 cut(s) 39, 167, 329, 437, 740, 857, 940, 1039, 1210
CviQI GTAC 1 cut(s) 930
DdeI CTNAG 9 cut(s) 104, 135, 160, 255, 534, 960, 965, 1277, 1325
DpnI GATC 4 cut(s) 616, 675, 768, 822
DpnII GATC 4 cut(s) 614, 673, 766, 820
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 782, 853
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 932
Ecl136II GAGCTC 1 cut(s) 971
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 973
Eco47I GGWCC 3 cut(s) 111, 1045, 1145
Eco53kI GAGCTC 1 cut(s) 971
Eco57I CTGAAG 3 cut(s) 483, 792, 995
Eco88I CYCGRG 2 cut(s) 413, 951
EcoICRI GAGCTC 1 cut(s) 971
EcoNI CCTNNNNNAGG 1 cut(s) 1411
EcoO109I RGGNCCY 2 cut(s) 242, 1145
EcoRI GAATTC 2 cut(s) 538, 1022
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 973
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 1280
FaeI CATG 9 cut(s) 42, 170, 332, 440, 743, 860, 943, 1042, 1213
FatI CATG 9 cut(s) 38, 166, 328, 436, 739, 856, 939, 1038, 1209
FauI CCCGC 1 cut(s) 1271
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 9 cut(s) 123, 147, 276, 326, 333, 513, 785, 937, 1254
FokI GGATG 5 cut(s) 101, 334, 410, 888, 968
FriOI GRGCYC 1 cut(s) 973
Fsp4HI GCNGC 9 cut(s) 123, 147, 276, 326, 333, 513, 785, 937, 1254
FspBI CTAG 2 cut(s) 35, 350
GlaI GCGC 1 cut(s) 102
GluI GCNGC 9 cut(s) 123, 147, 276, 326, 333, 513, 785, 937, 1254
GsaI CCCAGC 2 cut(s) 360, 1054
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 6 cut(s) 165, 189, 243, 744, 784, 855
HhaI GCGC 1 cut(s) 103
Hin1II CATG 9 cut(s) 42, 170, 332, 440, 743, 860, 943, 1042, 1213
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 2 cut(s) 584, 977
HinfI GANTC 4 cut(s) 295, 392, 799, 896
HphI GGTGA 5 cut(s) 690, 895, 1143, 1180, 1411
Hpy166II GTNNAC 3 cut(s) 261, 378, 1402
Hpy188I TCNGA 7 cut(s) 256, 485, 614, 667, 975, 1028, 1134
Hpy188III TCNNGA 7 cut(s) 197, 386, 533, 710, 867, 953, 995
Hpy8I GTNNAC 3 cut(s) 261, 378, 1402
HpyAV CCTTC 3 cut(s) 458, 629, 1036
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 3 cut(s) 24, 678, 1374
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 231, 240, 249, 281, 341, 521
HpyF3I CTNAG 9 cut(s) 104, 135, 160, 255, 534, 960, 965, 1277, 1325
HpySE526I ACGT 3 cut(s) 24, 678, 1374
Hsp92II CATG 9 cut(s) 42, 170, 332, 440, 743, 860, 943, 1042, 1213
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 4 cut(s) 614, 673, 766, 820
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 7 cut(s) 23, 208, 310, 485, 497, 535, 1290
Lsp1109I GCAGC 8 cut(s) 134, 158, 287, 337, 344, 499, 948, 1265
LweI GCATC 4 cut(s) 312, 432, 658, 946
MaeI CTAG 2 cut(s) 35, 350
MaeII ACGT 3 cut(s) 24, 678, 1374
MaeIII GTNAC 2 cut(s) 457, 691
MalI GATC 4 cut(s) 616, 675, 768, 822
MboI GATC 4 cut(s) 614, 673, 766, 820
MboII GAAGA 9 cut(s) 183, 667, 728, 1196, 1199, 1205, 1226, 1355, 1412
MhlI GDGCHC 1 cut(s) 973
MlsI TGGCCA 1 cut(s) 855
MluNI TGGCCA 1 cut(s) 855
MlyI GAGTC 2 cut(s) 386, 905
MmeI TCCRAC 4 cut(s) 89, 427, 827, 1107
Mox20I TGGCCA 1 cut(s) 855
MscI TGGCCA 1 cut(s) 855
MseI TTAA 5 cut(s) 54, 72, 1227, 1313, 1409
Msp20I TGGCCA 1 cut(s) 855
MspA1I CMGCKG 2 cut(s) 1050, 1256
MspCI CTTAAG 1 cut(s) 1408
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 7 cut(s) 131, 231, 240, 249, 281, 341, 521
NcoI CCATGG 1 cut(s) 166
NdeII GATC 4 cut(s) 614, 673, 766, 820
NlaIII CATG 9 cut(s) 42, 170, 332, 440, 743, 860, 943, 1042, 1213
NlaIV GGNNCC 6 cut(s) 210, 312, 493, 745, 1147, 1292
NmuCI GTSAC 1 cut(s) 457
NspI RCATGY 3 cut(s) 42, 332, 440
PaeI GCATGC 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 413
PaqCI CACCTGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 295, 799
PkrI GCNGC 9 cut(s) 124, 148, 277, 327, 334, 514, 786, 938, 1255
PleI GAGTC 2 cut(s) 386, 904
PpsI GAGTC 2 cut(s) 386, 904
PpuMI RGGWCCY 1 cut(s) 1145
PshBI ATTAAT 1 cut(s) 1313
Psp124BI GAGCTC 1 cut(s) 973
Psp5II RGGWCCY 1 cut(s) 1145
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 2 cut(s) 356, 1050
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 6 cut(s) 210, 312, 493, 745, 1147, 1292
PspPI GGNCC 5 cut(s) 111, 242, 743, 1045, 1145
PspPPI RGGWCCY 1 cut(s) 1145
PspXI VCTCGAGB 1 cut(s) 413
PstI CTGCAG 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 1256
RsaI GTAC 1 cut(s) 931
RsaNI GTAC 1 cut(s) 930
SacI GAGCTC 1 cut(s) 973
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 5 cut(s) 54, 72, 1227, 1313, 1409
SatI GCNGC 9 cut(s) 123, 147, 276, 326, 333, 513, 785, 937, 1254
Sau3AI GATC 4 cut(s) 614, 673, 766, 820
Sau96I GGNCC 5 cut(s) 111, 242, 743, 1045, 1145
SchI GAGTC 2 cut(s) 386, 905
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 4 cut(s) 312, 432, 658, 946
SfcI CTRYAG 2 cut(s) 513, 1097
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 3 cut(s) 111, 1045, 1145
SlaI CTCGAG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 413, 1408
SmoI CTYRAG 2 cut(s) 413, 1408
SphI GCATGC 1 cut(s) 332
SsiI CCGC 7 cut(s) 455, 785, 881, 917, 1048, 1239, 1264
SspI AATATT 2 cut(s) 473, 1118
SspMI CTAG 2 cut(s) 35, 350
SstI GAGCTC 1 cut(s) 973
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 3 cut(s) 27, 681, 1377
TaqI TCGA 3 cut(s) 414, 868, 984
TatI WGTACW 1 cut(s) 929
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 2 cut(s) 295, 799
Tru1I TTAA 5 cut(s) 54, 72, 1227, 1313, 1409
Tru9I TTAA 5 cut(s) 54, 72, 1227, 1313, 1409
TscAI CASTG 4 cut(s) 295, 466, 624, 856
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 8 cut(s) 122, 146, 275, 325, 332, 512, 936, 1253
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 4 cut(s) 388, 728, 1055, 1206
TspGWI ACGGA 3 cut(s) 101, 252, 1262
TspRI CASTG 4 cut(s) 295, 466, 624, 856
Vha464I CTTAAG 1 cut(s) 1408
VpaK11BI GGWCC 3 cut(s) 111, 1045, 1145
VspI ATTAAT 1 cut(s) 1313
XagI CCTNNNNNAGG 1 cut(s) 1411
XapI RAATTY 2 cut(s) 538, 1022
XceI RCATGY 3 cut(s) 42, 332, 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 1161
XhoI CTCGAG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 2 cut(s) 35, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.