pycom10g02420

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
2679340 .. 2684684
5345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02420.2

Sequence Viewer

Length: 1413 bp
ATGGCGCCCAAGGCAAAAAGCATCTATGTTGCGAGCTTTTCTATGGCTGTTAACCTATTGTTCTGTCTGTGTGCCTTCAAACTGTATGTGGAAGGAGAGTGGAAATTGAGCTGGAGCAGAAGAGCAGCAGAAGAAGCTGAGCACGTGGCAGCCATCCCTTGCTCAGGGCATGGACGAGCCTACTTAGATGGCCTAATTCTTGATGGGAAGGAACCTGTTTGTGAGTGCAATTCCTGCTATGGAGGCCCTGACTGCTCTTTGTTTGTAACTGGATGTGCAGCAAACGCCGACGGCGGAGACCCATTTTTCTTGGAGCCCTTTTGGATGCAACATGCAGCTAAAAGTGCAATTGCAGTAGCAGGATGGCATCGAATGAGTTACAGCTACCCTGATAAATCTTCCATGTCAGCAGAGCTTGAGAATCACATCCGCACAGTTCATGCCGTTGTTGGGAATGCTGTGACTGAAGGAAGATACATTGTTTTCGGTGCTGGCTCAACCCATCTTCTCAACGCTGCACTTTACGCGTTGTCTTCTGATAACTTTAACTCCTCACCTGCAAGTGTTTTGGTTTCAGTCCCTTATTACAAGCTTTACCAAACACAAGCGGAGTTTTTTCGATCACTTGACTTTAAGTTTGAAGGAGATGCGGCCTTGTTCCAGAACATCTCAGATGATACCGCAAACGTTATTGAGTATGTTACCTCACCAAACAATCCTGATGGGCAGCTGAAGAAGGCAATGTTTCAAGGTCCAAATGCCAAAGCAATCTATGATCGTGTATATTACTGGCCACATTTTACAGCGATTCCAGCTCCAGCAGATGATGATCTTATGATATTTTCAATTTCTAAGTTCATTGGCCATGCTGGTACTAGATTCGGGTGGGCAGTGGTGAAGGATGAGTCTGTGTACCAAAGAATGGAAACCTACATACAGTTAAGCAGCTTCGGTGTTTCCCGGGACACTCAGCTAAGAGCTCTGAAGCTTATGAATGTTGTCCTTGAAACTCGGGCCAAGGAAATTTTTGAATTTGGGTTCGACAATTTGAAGAAACGGTGGGAAAAGTTGAGCAGTACTCTTCGTTTGTCAAACCGATTTTCTCTGCAGAAAATTGCACCCCAATACTGCACGTATTTCCAAAAAATTAGAGTACCTTCACCAGCTTATGCGTGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTATGGAGTTCTGCAACAAGAAGCGAATGTTTATGGTCGCAAAGGTAGCTTGTTTGGCGCTGAAGATCGATATGTTCGCCTCGCCCTCATAAGAAGCGAAGATGATTTTGATATATTGCTTCAGCGACTTAACCATTTAGTCTTGGCTGAAAGGAATAGCAAAATAATTATTTCTTCTCAAGCAGGGGGTCAATACGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

52.71

Weight (kDa)

6.39

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 922
AccII CGCG 1 cut(s) 527
AciI CCGC 5 cut(s) 294, 430, 608, 650, 681
AclI AACGTT 1 cut(s) 687
AcoI YGGCCR 2 cut(s) 791, 862
AcsI RAATTY 2 cut(s) 1023, 1031
AcuI CTGAAG 5 cut(s) 486, 752, 1004, 1290, 1313
AcvI CACGTG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 874, 914, 1078, 1155
AfiI CCNNNNNNNGG 3 cut(s) 164, 450, 922
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 7 cut(s) 79, 641, 749, 846, 1007, 1031, 1051
Alw21I GWGCWC 2 cut(s) 144, 982
Alw26I GTCTC 1 cut(s) 291
Ama87I CYCGRG 2 cut(s) 960, 1011
AoxI GGCC 6 cut(s) 190, 244, 651, 791, 862, 1014
ApeKI GCWGC 7 cut(s) 125, 149, 278, 335, 515, 727, 945
ApoI RAATTY 2 cut(s) 1023, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 2 cut(s) 7, 1268
AspS9I GGNCC 3 cut(s) 245, 752, 1014
AsuC2I CCSGG 2 cut(s) 961, 962
AsuHPI GGTGA 5 cut(s) 546, 699, 907, 1152, 1189
AvaI CYCGRG 2 cut(s) 960, 1011
AvaII GGWCC 1 cut(s) 752
BalI TGGCCA 2 cut(s) 793, 864
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 318, 982
BbrPI CACGTG 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 144, 982
BbvI GCAGC 7 cut(s) 137, 161, 290, 347, 502, 739, 957
BccI CCATC 6 cut(s) 161, 182, 197, 357, 510, 716
BceAI ACGGC 2 cut(s) 307, 428
BcnI CCSGG 2 cut(s) 961, 962
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 1 cut(s) 1106
BfoI RGCGCY 2 cut(s) 8, 1269
BfuAI ACCTGC 1 cut(s) 565
BisI GCNGC 8 cut(s) 126, 150, 279, 336, 516, 651, 728, 946
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 8 cut(s) 127, 151, 280, 337, 517, 652, 729, 947
BmcAI AGTACT 1 cut(s) 1078
Bme1390I CCNGG 2 cut(s) 961, 962
Bme18I GGWCC 1 cut(s) 752
BmeT110I CYCGRG 2 cut(s) 960, 1011
BmgT120I GGNCC 3 cut(s) 245, 752, 1014
BmiI GGNNCC 3 cut(s) 6, 213, 315
BmrFI CCNGG 2 cut(s) 961, 962
BmsI GCATC 4 cut(s) 30, 315, 376, 637
BpiI GAAGAC 1 cut(s) 525
BplI GAGNNNNNCTC 2 cut(s) 1063, 1095
BpmI CTGGAG 2 cut(s) 133, 801
Bpu10I CCTNAGC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 2 cut(s) 437, 1371
BpuMI CCSGG 2 cut(s) 961, 962
Bsa29I ATCGAT 1 cut(s) 1276
BsaAI YACGTR 3 cut(s) 145, 1134, 1405
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 9, 960, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 450, 922
Bse1I ACTGG 2 cut(s) 274, 794
Bse3DI GCAATG 1 cut(s) 747
Bse8I GATNNNNATC 1 cut(s) 828
BseCI ATCGAT 1 cut(s) 1276
BseDI CCNNGG 3 cut(s) 9, 960, 1017
BseGI GGATG 6 cut(s) 153, 278, 330, 368, 426, 907
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 164, 450, 922
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 4 cut(s) 129, 177, 684, 983
BseNI ACTGG 2 cut(s) 274, 794
BseRI GAGGAG 1 cut(s) 541
BseXI GCAGC 7 cut(s) 137, 161, 290, 347, 502, 739, 957
BsgI GTGCAG 3 cut(s) 297, 501, 1114
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 6 cut(s) 192, 246, 653, 793, 864, 1016
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 1276
BsiHKAI GWGCWC 2 cut(s) 144, 982
BsiHKCI CYCGRG 2 cut(s) 960, 1011
BsiSI CCGG 1 cut(s) 961
BslFI GGGAC 2 cut(s) 563, 977
BslI CCNNNNNNNGG 3 cut(s) 164, 450, 922
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 563, 977
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 6 cut(s) 192, 246, 653, 793, 864, 1016
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 2 cut(s) 960, 1011
Bsp1286I GDGCHC 3 cut(s) 144, 318, 982
Bsp143I GATC 4 cut(s) 620, 775, 829, 1273
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 5 cut(s) 294, 430, 608, 650, 681
BspANI GGCC 6 cut(s) 192, 246, 653, 793, 864, 1016
BspCNI CTCAG 4 cut(s) 130, 176, 683, 982
BspDI ATCGAT 1 cut(s) 1276
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 6, 213, 315
BspMAI CTGCAG 1 cut(s) 1110
BspMI ACCTGC 1 cut(s) 565
BspQI GCTCTTC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 2 cut(s) 274, 794
BssECI CCNNGG 3 cut(s) 9, 960, 1017
BssMI GATC 4 cut(s) 620, 775, 829, 1273
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 9, 1017
Bst4CI ACNGT 4 cut(s) 84, 436, 939, 1059
Bst6I CTCTTC 3 cut(s) 115, 1086, 1188
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBAI YACGTR 3 cut(s) 145, 1134, 1405
BstC8I GCNNGC 2 cut(s) 34, 493
BstDEI CTNAG 7 cut(s) 138, 163, 184, 670, 852, 969, 974
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 6 cut(s) 153, 278, 330, 368, 426, 907
BstFNI CGCG 1 cut(s) 527
BstH2I RGCGCY 2 cut(s) 8, 1269
BstHHI GCGC 2 cut(s) 7, 1268
BstKTI GATC 4 cut(s) 623, 778, 832, 1276
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 4 cut(s) 620, 775, 829, 1273
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 959, 960
BstSFI CTRYAG 1 cut(s) 1106
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 7 cut(s) 137, 161, 290, 347, 502, 739, 957
BstV2I GAAGAC 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 1276
BsuRI GGCC 6 cut(s) 192, 246, 653, 793, 864, 1016
BsuTUI ATCGAT 1 cut(s) 1276
BtsCI GGATG 6 cut(s) 153, 278, 330, 368, 426, 907
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 1 cut(s) 897
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 2 cut(s) 34, 493
CfoI GCGC 2 cut(s) 7, 1268
Cfr13I GGNCC 3 cut(s) 245, 752, 1014
Cfr9I CCCGGG 1 cut(s) 960
ClaI ATCGAT 1 cut(s) 1276
Csp6I GTAC 4 cut(s) 873, 913, 1077, 1154
CviAII CATG 5 cut(s) 170, 332, 403, 440, 866
CviQI GTAC 4 cut(s) 873, 913, 1077, 1154
DdeI CTNAG 7 cut(s) 138, 163, 184, 670, 852, 969, 974
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 622, 777, 831, 1275
DpnII GATC 4 cut(s) 620, 775, 829, 1273
EaeI YGGCCR 2 cut(s) 791, 862
Eam1104I CTCTTC 3 cut(s) 115, 1086, 1188
EarI CTCTTC 3 cut(s) 115, 1086, 1188
EciI GGCGGA 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 980
Eco130I CCWWGG 2 cut(s) 9, 1017
Eco24I GRGCYC 2 cut(s) 318, 982
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 752
Eco53kI GAGCTC 1 cut(s) 980
Eco57I CTGAAG 5 cut(s) 486, 752, 1004, 1290, 1313
Eco72I CACGTG 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 960, 1011
EcoICRI GAGCTC 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 9, 1017
EcoT38I GRGCYC 2 cut(s) 318, 982
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 9, 1017
FaeI CATG 5 cut(s) 173, 335, 406, 443, 869
FaqI GGGAC 2 cut(s) 563, 977
FatI CATG 5 cut(s) 169, 331, 402, 439, 865
Fnu4HI GCNGC 8 cut(s) 126, 150, 279, 336, 516, 651, 728, 946
FokI GGATG 6 cut(s) 140, 285, 337, 375, 413, 914
FriOI GRGCYC 2 cut(s) 318, 982
Fsp4HI GCNGC 8 cut(s) 126, 150, 279, 336, 516, 651, 728, 946
FspBI CTAG 1 cut(s) 876
GlaI GCGC 2 cut(s) 6, 1267
GluI GCNGC 8 cut(s) 126, 150, 279, 336, 516, 651, 728, 946
GsuI CTGGAG 2 cut(s) 133, 801
HaeII RGCGCY 2 cut(s) 8, 1269
HaeIII GGCC 6 cut(s) 192, 246, 653, 793, 864, 1016
HapII CCGG 1 cut(s) 961
HhaI GCGC 2 cut(s) 7, 1268
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 173, 335, 406, 443, 869
Hin6I GCGC 2 cut(s) 5, 1266
HinP1I GCGC 2 cut(s) 5, 1266
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 2 cut(s) 590, 986
HinfI GANTC 4 cut(s) 421, 808, 879, 905
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 1 cut(s) 961
HphI GGTGA 5 cut(s) 546, 699, 907, 1152, 1189
Hpy166II GTNNAC 2 cut(s) 52, 913
Hpy188I TCNGA 3 cut(s) 538, 673, 984
Hpy188III TCNNGA 3 cut(s) 200, 661, 719
Hpy8I GTNNAC 2 cut(s) 52, 913
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 8 cut(s) 85, 86, 202, 461, 635, 730, 892, 1167
HpyCH4III ACNGT 4 cut(s) 84, 436, 939, 1059
HpyCH4IV ACGT 4 cut(s) 144, 687, 1133, 1404
HpyF3I CTNAG 7 cut(s) 138, 163, 184, 670, 852, 969, 974
HpySE526I ACGT 4 cut(s) 144, 687, 1133, 1404
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 173, 335, 406, 443, 869
HspAI GCGC 2 cut(s) 5, 1266
KasI GGCGCC 1 cut(s) 4
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 620, 775, 829, 1273
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 3 cut(s) 114, 313, 820
Lsp1109I GCAGC 7 cut(s) 137, 161, 290, 347, 502, 739, 957
LweI GCATC 4 cut(s) 30, 315, 376, 637
MaeI CTAG 1 cut(s) 876
MaeII ACGT 4 cut(s) 144, 687, 1133, 1404
MaeIII GTNAC 4 cut(s) 265, 377, 460, 700
MalI GATC 4 cut(s) 622, 777, 831, 1275
MboI GATC 4 cut(s) 620, 775, 829, 1273
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 3 cut(s) 144, 318, 982
MlsI TGGCCA 2 cut(s) 793, 864
MluI ACGCGT 1 cut(s) 525
MluNI TGGCCA 2 cut(s) 793, 864
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 914
MnlI CCTC 7 cut(s) 236, 562, 715, 1182, 1189, 1298, 1304
Mox20I TGGCCA 2 cut(s) 793, 864
MscI TGGCCA 2 cut(s) 793, 864
MseI TTAA 6 cut(s) 51, 546, 633, 941, 1338, 1411
Msp20I TGGCCA 2 cut(s) 793, 864
MspA1I CMGCKG 1 cut(s) 730
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 2 cut(s) 961, 962
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 460
MvnI CGCG 1 cut(s) 527
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 961, 962
NdeII GATC 4 cut(s) 620, 775, 829, 1273
NlaIII CATG 5 cut(s) 173, 335, 406, 443, 869
NlaIV GGNNCC 3 cut(s) 6, 213, 315
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 115
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 3 cut(s) 421, 808, 879
PflMI CCANNNNNTGG 1 cut(s) 922
PkrI GCNGC 8 cut(s) 127, 151, 280, 337, 517, 652, 729, 947
PleI GAGTC 1 cut(s) 913
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 1 cut(s) 913
Ppu21I YACGTR 3 cut(s) 145, 1134, 1405
Psp124BI GAGCTC 1 cut(s) 982
Psp1406I AACGTT 1 cut(s) 687
PspCI CACGTG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 6, 213, 315
PspPI GGNCC 3 cut(s) 245, 752, 1014
PstI CTGCAG 1 cut(s) 1110
PvuII CAGCTG 1 cut(s) 730
RsaI GTAC 4 cut(s) 874, 914, 1078, 1155
RsaNI GTAC 4 cut(s) 873, 913, 1077, 1154
SacI GAGCTC 1 cut(s) 982
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 6 cut(s) 51, 546, 633, 941, 1338, 1411
SatI GCNGC 8 cut(s) 126, 150, 279, 336, 516, 651, 728, 946
Sau3AI GATC 4 cut(s) 620, 775, 829, 1273
Sau96I GGNCC 3 cut(s) 245, 752, 1014
ScaI AGTACT 1 cut(s) 1078
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 2 cut(s) 961, 962
SduI GDGCHC 3 cut(s) 144, 318, 982
SfaNI GCATC 4 cut(s) 30, 315, 376, 637
SfcI CTRYAG 1 cut(s) 1106
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 752
SmaI CCCGGG 1 cut(s) 962
SmlI CTYRAG 2 cut(s) 416, 1386
SmoI CTYRAG 2 cut(s) 416, 1386
SsiI CCGC 5 cut(s) 294, 430, 608, 650, 681
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 876
SstI GAGCTC 1 cut(s) 982
StyD4I CCNGG 2 cut(s) 959, 960
StyI CCWWGG 2 cut(s) 9, 1017
TaaI ACNGT 4 cut(s) 84, 436, 939, 1059
TaiI ACGT 4 cut(s) 147, 690, 1136, 1407
TaqI TCGA 4 cut(s) 370, 619, 1041, 1276
TatI WGTACW 1 cut(s) 1076
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 3 cut(s) 421, 808, 879
Tru1I TTAA 6 cut(s) 51, 546, 633, 941, 1338, 1411
Tru9I TTAA 6 cut(s) 51, 546, 633, 941, 1338, 1411
TscAI CASTG 1 cut(s) 897
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 7 cut(s) 125, 149, 278, 335, 515, 727, 945
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 428, 847, 1007
TspMI CCCGGG 1 cut(s) 960
TspRI CASTG 1 cut(s) 897
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 752
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 1023, 1031
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 1170
XmaI CCCGGG 1 cut(s) 960
XspI CTAG 1 cut(s) 876
ZrmI AGTACT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.