Rmu_co8325345.1_g000001

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8325345.1
OG0001908
Physical Location & Seq
Forward (+)
523 .. 840
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8325345.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atggctaagctacaacaaagctcctacgttgtgtgcctggcattttctatagttctaaatctgtcattgatattcaagctctatggacatggaggtcagtgggagctcagttggagcagaagggcagcagaagaagccgagtacgtcgccgccgtcccttgctcggggcatggcagaacctacttggatggcttggttcttgatggcaagcaacccgcttgtgagtgcaattcttgctatggaggctcagattgttctcagttcttaactgattgtgaatcaaatgctgacgggtttgtccttctctcttttttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

4.71

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 93, 296
AciI CCGC 2 cut(s) 150, 216
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 10, 21, 79, 106
AluI AGCT 4 cut(s) 10, 21, 79, 106
Alw21I GWGCWC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 163
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 182, 197
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 126, 150
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 127, 151
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
BseBI CCWGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseMII CTCAG 3 cut(s) 121, 261, 272
BseXI GCAGC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 163, 164
BsmFI GGGAC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 150, 216
BspCNI CTCAG 3 cut(s) 120, 260, 271
Bst2UI CCWGG 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 6, 107, 247, 258
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 134, 234, 243
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 89, 170
CviJI RGCY 8 cut(s) 5, 10, 21, 79, 106, 137, 192, 246
CviKI_1 RGCY 8 cut(s) 5, 10, 21, 79, 106, 137, 192, 246
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 4 cut(s) 6, 107, 247, 258
DrdI GACNNNNNNGTC 2 cut(s) 93, 296
DseDI GACNNNNNNGTC 2 cut(s) 93, 296
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 92, 173
FaiI YATR 5 cut(s) 50, 84, 90, 171, 240
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 88, 169
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 126, 150
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 126, 150
FspBI CTAG 1 cut(s) 316
GluI GCNGC 2 cut(s) 126, 150
Hin1II CATG 2 cut(s) 92, 173
HinfI GANTC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 114, 311
HpyCH4IV ACGT 2 cut(s) 27, 144
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 234, 243
HpyF3I CTNAG 4 cut(s) 6, 107, 247, 258
HpySE526I ACGT 2 cut(s) 27, 144
Hsp92II CATG 2 cut(s) 92, 173
LmnI GCTCC 3 cut(s) 26, 103, 114
LpnPI CCDG 2 cut(s) 23, 50
Lsp1109I GCAGC 1 cut(s) 137
MaeI CTAG 1 cut(s) 316
MaeII ACGT 2 cut(s) 27, 144
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 86, 236
MseI TTAA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 134, 234, 243
NlaIII CATG 2 cut(s) 92, 173
NmeAIII GCCGAG 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 127, 151
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 2 cut(s) 126, 150
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 108
SetI ASST 8 cut(s) 12, 23, 30, 81, 97, 108, 147, 182
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 150, 216
SspMI CTAG 1 cut(s) 316
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 2 cut(s) 30, 147
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 104
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.