Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4255263 .. 4263166

Gene Structure 7904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCTAAGCCACAAAGCTTCTACCTTGTGTGCCTCGCATTTTCTTTAGTTTTCAATCTGTTGTTGATCTTCAAACTATATGTGGGTAGAGAGTGGGAACTGAGTTGGAGCAGAAGGGCAGCAGAAGAAGCTGAGTATGTTGCAGCCATCTCTTGCTCAGGGCATGGAAAAGCCTACTTGGATGGGTTAACTCTCGATGGCAAGGAGCCTGTTTGTGAATGCAGTTCTTGCTATGGAGGCCCTCACTGCTCTGAGTTTTTGACTGGTTGTGCAGCAGATGCTGGCAGTGGAGACCCACTTTTCTTGGAGCCATTTTGGATGCAACATGCATCAAAAAGTGCACTTGTAGTAGCAGGTTGGCATCGAATGAGCTATACCTCTGCTGATCAATCTTACATCTCAGCAGAGCTTGAAAGGCACATTCGCAAACTTCATGCCATCGTTGGAAATGCCGTGACTGGAGGAAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCAGTTCATGCACTGTCTTCCCATAATTCAAGCTCCTCCTCCTCGCCTGCAAATAGTATTAACATGTGTACGTGTGTGGACCTACTTCTCTGGTGGGTGATACCTGTATACATAAAATCACCAATTGAGATGTATTACCAAATACAAATGGAGTTTTTTCGTTCGATGGACTATGTATTTCGAGGAGATGCATCCTTGTTGCAGAACATCTCAGATGCTACTAATGTTATTGAGTTTGTTACCTCACCAAACAATCCTGATGGCCAGCTGAATAAGGCAAATGTTCAAGGTCCAAATGCCAAAGCAATCTATGATCGTGTCTATTACTGGCCACATTTTACAGCAATTCCTACTCCAGCAAATGATGATATCATGATATTTGCAATTTCTAAGCTCACTGGCCATGCTGGTAGCAGATTCGGGTGGGCTGTGGTAAAGGATGAGTCTGTGTTCCAAAAGATGACCATGTATACGCTCATAGATAGCATGGGTATTTCTCGAGATGCTCAGCTGAGAGCTTTGAAGATTTTGAATGTAGTCCTTGAAGGGGGAGGAAAGGATTTTTTTGAATTCGGATATAACACTATGAGGAAGCGTTGGGAAAAATTGAGGAACATCCTCTCTGTATCAAATCGCTTTAGTCTGCAAAAATTTGCACCCAAACACTGCACCTTTTTCAAGAAAACTAGAGAACCTTCACCAGCTTATGCATGGGTGAAGTGCGAAAGGGAAGAGGATAAAGATTGCTATGCAGTCCTCCAAGAAGAAGCCAACGTTTACGGGCTTAGAGGTTCTCAGTTTGGCGCTGAAGATCGATTTGTGCGTCTCGCTCTCTTAAGGAGCCAAGATGATTTTGATTTATTGCTTCAACGACTCAACCAATTAGTCTCGGAAGAAAAAAAAACTCGAGTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

476

Amino Acids

53.44

Weight (kDa)

6.83

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccI	GTMKAC	2 cut(s)	618, 980
AclI	AACGTT	1 cut(s)	1284
AcoI	YGGCCR	3 cut(s)	772, 839, 910
AcsI	RAATTY	2 cut(s)	1079, 1160
AcuI	CTGAAG	1 cut(s)	1338
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	1057
AflII	CTTAAG	1 cut(s)	1345
AflIII	ACRYGT	2 cut(s)	573, 581
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	3 cut(s)	285, 1340, 1402
Alw44I	GTGCAC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	281
Ama87I	CYCGRG	2 cut(s)	1008, 1416
AoxI	GGCC	4 cut(s)	238, 772, 839, 910
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	119, 143, 272, 509
ApoI	RAATTY	2 cut(s)	1079, 1160
AspLEI	GCGC	1 cut(s)	1316
AspS9I	GGNCC	3 cut(s)	239, 589, 800
AsuHPI	GGTGA	5 cut(s)	619, 621, 747, 1200, 1237
AvaI	CYCGRG	2 cut(s)	1008, 1416
AvaII	GGWCC	2 cut(s)	589, 800
BaeGI	GKGCMC	1 cut(s)	343
BalI	TGGCCA	3 cut(s)	774, 841, 912
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	4 cut(s)	131, 155, 284, 496
BccI	CCATC	6 cut(s)	155, 176, 191, 446, 670, 764
BceAI	ACGGC	1 cut(s)	437
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	285, 1340, 1402
BfaI	CTAG	1 cut(s)	1197
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	1317
BfrI	CTTAAG	1 cut(s)	1345
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	4 cut(s)	120, 144, 273, 510
BlpI	GCTNAGC	2 cut(s)	6, 1017
BlsI	GCNGC	4 cut(s)	121, 145, 274, 511
Bme18I	GGWCC	2 cut(s)	589, 800
BmeT110I	CYCGRG	2 cut(s)	1008, 1416
BmgT120I	GGNCC	3 cut(s)	239, 589, 800
BmiI	GGNNCC	3 cut(s)	207, 309, 1352
BmsI	GCATC	8 cut(s)	268, 309, 338, 370, 688, 710, 715, 1003
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	480, 849
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	2 cut(s)	6, 1017
Bsa29I	ATCGAT	1 cut(s)	1324
BsaAI	YACGTR	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	1057
Bse1I	ACTGG	4 cut(s)	268, 463, 842, 913
BseCI	ATCGAT	1 cut(s)	1324
BseGI	GGATG	5 cut(s)	187, 324, 701, 955, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	1057
BseMII	CTCAG	9 cut(s)	92, 123, 171, 243, 414, 735, 1013, 1031, 1319
BseNI	ACTGG	4 cut(s)	268, 463, 842, 913
BseRI	GAGGAG	4 cut(s)	535, 538, 541, 708
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	131, 155, 284, 496
BsgI	GTGCAG	2 cut(s)	291, 1162
BshFI	GGCC	4 cut(s)	240, 774, 841, 912
BshVI	ATCGAT	1 cut(s)	1324
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	2 cut(s)	1008, 1416
BslI	CCNNNNNNNGG	1 cut(s)	1057
BsmAI	GTCTC	3 cut(s)	285, 1340, 1402
BsmBI	CGTCTC	1 cut(s)	1340
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	240, 774, 841, 912
Bso31I	GGTCTC	1 cut(s)	285
BsoBI	CYCGRG	2 cut(s)	1008, 1416
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	66, 385, 823, 1321
Bsp1720I	GCTNAGC	2 cut(s)	6, 1017
BspANI	GGCC	4 cut(s)	240, 774, 841, 912
BspCNI	CTCAG	9 cut(s)	93, 124, 170, 244, 413, 734, 1014, 1030, 1318
BspDI	ATCGAT	1 cut(s)	1324
BspHI	TCATGA	1 cut(s)	882
BspLI	GGNNCC	3 cut(s)	207, 309, 1352
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	1345
BspTNI	GGTCTC	1 cut(s)	285
BsrI	ACTGG	4 cut(s)	268, 463, 842, 913
BssMI	GATC	4 cut(s)	66, 385, 823, 1321
BssNAI	GTATAC	2 cut(s)	619, 981
Bst1107I	GTATAC	2 cut(s)	619, 981
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	1236
BstAFI	CTTAAG	1 cut(s)	1345
BstAPI	GCANNNNNTGC	3 cut(s)	228, 278, 518
BstBAI	YACGTR	1 cut(s)	582
BstC8I	GCNNGC	4 cut(s)	283, 487, 558, 776
BstF5I	GGATG	5 cut(s)	187, 324, 701, 955, 1125
BstH2I	RGCGCY	1 cut(s)	1317
BstHHI	GCGC	1 cut(s)	1316
BstKTI	GATC	4 cut(s)	69, 388, 826, 1324
BstMAI	GTCTC	3 cut(s)	285, 1340, 1402
BstMBI	GATC	4 cut(s)	66, 385, 823, 1321
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
BstNSI	RCATGY	2 cut(s)	329, 577
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	343
BstV1I	GCAGC	4 cut(s)	131, 155, 284, 496
BstV2I	GAAGAC	1 cut(s)	519
BstZ17I	GTATAC	2 cut(s)	619, 981
Bsu15I	ATCGAT	1 cut(s)	1324
BsuRI	GGCC	4 cut(s)	240, 774, 841, 912
BsuTUI	ATCGAT	1 cut(s)	1324
BtsCI	GGATG	5 cut(s)	187, 324, 701, 955, 1125
BtsI	GCAGTG	3 cut(s)	244, 292, 1174
BtsIMutI	CAGTG	5 cut(s)	244, 292, 521, 906, 1174
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	4 cut(s)	283, 487, 558, 776
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	882
CfoI	GCGC	1 cut(s)	1316
Cfr13I	GGNCC	3 cut(s)	239, 589, 800
ClaI	ATCGAT	1 cut(s)	1324
CseI	GACGC	1 cut(s)	1322
Csp6I	GTAC	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviQI	GTAC	1 cut(s)	579
DpnI	GATC	4 cut(s)	68, 387, 825, 1323
DpnII	GATC	4 cut(s)	66, 385, 823, 1321
EaeI	YGGCCR	3 cut(s)	772, 839, 910
Eam1104I	CTCTTC	1 cut(s)	1236
EarI	CTCTTC	1 cut(s)	1236
Eco31I	GGTCTC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	880
Eco47I	GGWCC	2 cut(s)	589, 800
Eco57I	CTGAAG	1 cut(s)	1338
Eco88I	CYCGRG	2 cut(s)	1008, 1416
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	1079
EcoRV	GATATC	1 cut(s)	880
EcoT22I	ATGCAT	3 cut(s)	331, 703, 1222
Esp3I	CGTCTC	1 cut(s)	1340
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	618, 980
Fnu4HI	GCNGC	4 cut(s)	120, 144, 273, 510
FokI	GGATG	5 cut(s)	194, 331, 688, 962, 1112
Fsp4HI	GCNGC	4 cut(s)	120, 144, 273, 510
FspBI	CTAG	1 cut(s)	1197
GlaI	GCGC	1 cut(s)	1315
GluI	GCNGC	4 cut(s)	120, 144, 273, 510
GsuI	CTGGAG	2 cut(s)	480, 849
HaeII	RGCGCY	1 cut(s)	1317
HaeIII	GGCC	4 cut(s)	240, 774, 841, 912
HgaI	GACGC	1 cut(s)	1322
HhaI	GCGC	1 cut(s)	1316
Hin6I	GCGC	1 cut(s)	1314
HinP1I	GCGC	1 cut(s)	1314
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	3 cut(s)	927, 953, 1383
HpaI	GTTAAC	1 cut(s)	189
HphI	GGTGA	5 cut(s)	619, 621, 747, 1200, 1237
Hpy166II	GTNNAC	7 cut(s)	189, 341, 579, 589, 619, 981, 1288
Hpy188I	TCNGA	4 cut(s)	253, 724, 1085, 1402
Hpy188III	TCNNGA	6 cut(s)	194, 767, 883, 1008, 1010, 1189
Hpy8I	GTNNAC	7 cut(s)	189, 341, 579, 589, 619, 981, 1288
HpyAV	CCTTC	3 cut(s)	108, 1049, 1215
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	2 cut(s)	581, 1284
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
HpySE526I	ACGT	2 cut(s)	581, 1284
HspAI	GCGC	1 cut(s)	1314
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	66, 385, 823, 1321
LmnI	GCTCC	5 cut(s)	108, 205, 307, 548, 1350
Lsp1109I	GCAGC	4 cut(s)	131, 155, 284, 496
LweI	GCATC	8 cut(s)	268, 309, 338, 370, 688, 710, 715, 1003
MaeI	CTAG	1 cut(s)	1197
MaeII	ACGT	2 cut(s)	581, 1284
MaeIII	GTNAC	2 cut(s)	454, 748
MalI	GATC	4 cut(s)	68, 387, 825, 1323
MboI	GATC	4 cut(s)	66, 385, 823, 1321
MboII	GAAGA	9 cut(s)	61, 137, 477, 519, 1045, 1253, 1286, 1331, 1415
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	3 cut(s)	774, 841, 912
MluCI	AATT	8 cut(s)	535, 633, 855, 894, 1079, 1115, 1160, 1391
MluNI	TGGCCA	3 cut(s)	774, 841, 912
MlyI	GAGTC	2 cut(s)	962, 1377
MmeI	TCCRAC	2 cut(s)	86, 424
Mox20I	TGGCCA	3 cut(s)	774, 841, 912
Mph1103I	ATGCAT	3 cut(s)	331, 703, 1222
MscI	TGGCCA	3 cut(s)	774, 841, 912
MseI	TTAA	4 cut(s)	188, 570, 1346, 1426
Msp20I	TGGCCA	3 cut(s)	774, 841, 912
MspA1I	CMGCKG	2 cut(s)	778, 1021
MspCI	CTTAAG	1 cut(s)	1345
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	7 cut(s)	128, 228, 237, 246, 278, 415, 518
NdeII	GATC	4 cut(s)	66, 385, 823, 1321
NlaIV	GGNNCC	3 cut(s)	207, 309, 1352
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	3 cut(s)	331, 703, 1222
NspI	RCATGY	2 cut(s)	329, 577
PaeR7I	CTCGAG	2 cut(s)	1008, 1416
PagI	TCATGA	1 cut(s)	882
PciI	ACATGT	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	1330
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	927
PkrI	GCNGC	4 cut(s)	121, 145, 274, 511
PleI	GAGTC	2 cut(s)	961, 1377
PpsI	GAGTC	2 cut(s)	961, 1377
Ppu21I	YACGTR	1 cut(s)	582
PscI	ACATGT	1 cut(s)	573
Psp1406I	AACGTT	1 cut(s)	1284
PspN4I	GGNNCC	3 cut(s)	207, 309, 1352
PspPI	GGNCC	3 cut(s)	239, 589, 800
PspXI	VCTCGAGB	1 cut(s)	1416
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	2 cut(s)	778, 1021
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	188, 570, 1346, 1426
SatI	GCNGC	4 cut(s)	120, 144, 273, 510
Sau3AI	GATC	4 cut(s)	66, 385, 823, 1321
Sau96I	GGNCC	3 cut(s)	239, 589, 800
SchI	GAGTC	2 cut(s)	962, 1377
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	8 cut(s)	268, 309, 338, 370, 688, 710, 715, 1003
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	2 cut(s)	1008, 1416
SinI	GGWCC	2 cut(s)	589, 800
SlaI	CTCGAG	2 cut(s)	1008, 1416
SmlI	CTYRAG	3 cut(s)	1008, 1345, 1416
SmoI	CTYRAG	3 cut(s)	1008, 1345, 1416
Sse9I	AATT	8 cut(s)	535, 633, 855, 894, 1079, 1115, 1160, 1391
SspMI	CTAG	1 cut(s)	1197
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	2 cut(s)	584, 1287
TaqI	TCGA	7 cut(s)	195, 364, 674, 691, 1009, 1324, 1417
TasI	AATT	8 cut(s)	535, 633, 855, 894, 1079, 1115, 1160, 1391
TfiI	GAWTC	1 cut(s)	927
Tru1I	TTAA	4 cut(s)	188, 570, 1346, 1426
Tru9I	TTAA	4 cut(s)	188, 570, 1346, 1426
TscAI	CASTG	5 cut(s)	251, 292, 528, 913, 1181
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	4 cut(s)	119, 143, 272, 509
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	422, 506
TspRI	CASTG	5 cut(s)	251, 292, 528, 913, 1181
Vha464I	CTTAAG	1 cut(s)	1345
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	589, 800
XapI	RAATTY	2 cut(s)	1079, 1160
XceI	RCATGY	2 cut(s)	329, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1218
XhoI	CTCGAG	2 cut(s)	1008, 1416
XmiI	GTMKAC	2 cut(s)	618, 980
XspI	CTAG	1 cut(s)	1197
Zsp2I	ATGCAT	3 cut(s)	331, 703, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.