Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4290783 .. 4294482

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCTAAGGCACAAAGCTCCTCCTACTTTGTGATCTTGGCACTTTCTATAGCTGTTAATCTGTTATTGGTTTTCCAATTCTGTGTGGATGGAGAGTGGAGACTTACTTGGAGTAAAAGAGCAGCAGAAGAAGCTGAGCGTGTGGCAGCCATTCCTTGCTCAGGCCATGGAACAGCCTATTTGGATGGGTTGGTTCTTGATGGGAAGGAACCAGTTTGTGAGTGTAATTCTTGCTATGAAGGCCCAGATTGCTCTGAGTTTGTAACTGAATGTGCAGCAAATGCTGACAGTGGAGACCCGTATTTCTTGCAGCCATTTTGGATGCAACATGCAGCCCAAAGTGCAGTTTTAGTAGCAGGGTGGCATCGGATGGGATATAGCTACCCTGATGGTTCTTACATCTCAGCAGAGCTAGAGGGGCACATCCGTGAATTGCATTCCACTGTGGGAAATGCAGTAACTCAAGGAAGATACATTGTGTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCAGTTCATGCATTGTCTTCTGATAATTCTTCCAACTCCTCCTCACCTGCAAGTGTTGTAGCTACAATTCCTTATTACAGGCTTTACAAAACGCAAACGGAATTTTTTCGATCATTGGACTACAGGTTTGAAGGAGACACATCCTCATTTCTTAACATTTCAGAAGCTGGCAAAGTTATTGAGTTTGTAACCTCACCAAACAATCCTGATGGAAAGCTGAATAAGGCAGTTCTTCACGGCCCCAACGCCTCTGCAATTTATGATCGGGTCTATTACTGGCCACATTTTACAGCAATTCCGAATCCAGCTGATGATGATCTTATGCTATTCTCACTTTCCAAACTCACTGGTCATGCTGGTTCTAGATTCGGATGGGCAGTGATAAAGAACGAGTCTGTGTACCAAAAAATGACGGAGTATATGAGTTCAAGTAGCATGGGTGTTTCTCGAGATGCTCAGCTAAGAGCTTTGAAGCTTATCAATGTGGTGCTTGAAACTAGAGGCAAGCAAATCTTTGAATTTGGATACCACACCATGAGGAATCGCTGGGAAAGCTTGAGCAAAATCTTGTCTTTGTCAAACCGATTTTCTCTGCAGAAACTTGGACCCCGATACTGCACTTATTTCAAGAAAATTAGAGGACCCTCACCAGCATATGCGTGGGTGAAGTGTGAGAGGGAAGAGGATACAGATTGCTATGAAGTCCTCAAAGCAGCCAATATTACTGGGCGTAGCGGAAGCATATTTTCAGCTGCAGACCGCTATGTACGTCTCAGCCTCATAAGGAGCCAAGATGACTTTGATATATTGATTCAGCGACTAACCCAGTTGGTCTCAGAAGAAAGACAGCAGCAAAACCATGCAAACAATTTCTTGCAGCTCAAGAAGCCTCTGATGAGCACCCTAAGAAGGGGTCTTGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

480

Amino Acids

53.62

Weight (kDa)

6.83

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	568
AciI	CCGC	2 cut(s)	1248, 1273
AcoI	YGGCCR	1 cut(s)	791
AcsI	RAATTY	2 cut(s)	614, 1031
AfaI	GTAC	2 cut(s)	914, 1281
AfiI	CCNNNNNNNGG	3 cut(s)	161, 1422, 1423
AgsI	TTSAA	6 cut(s)	644, 942, 985, 1007, 1031, 1141
AleI	CACNNNNGTG	1 cut(s)	426
Alw21I	GWGCWC	1 cut(s)	1415
Alw26I	GTCTC	5 cut(s)	94, 288, 642, 1289, 1351
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	960
AoxI	GGCC	4 cut(s)	163, 241, 751, 791
ApoI	RAATTY	2 cut(s)	614, 1031
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	4 cut(s)	242, 752, 1118, 1154
AsuHPI	GGTGA	4 cut(s)	549, 699, 1152, 1189
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	2 cut(s)	1118, 1154
BaeGI	GKGCMC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	1415
BccI	CCATC	7 cut(s)	83, 179, 194, 364, 383, 716, 879
BceAI	ACGGC	1 cut(s)	766
BciVI	GTATCC	2 cut(s)	1031, 1192
BcoDI	GTCTC	5 cut(s)	94, 288, 642, 1289, 1351
BfaI	CTAG	3 cut(s)	413, 876, 1011
BfmI	CTRYAG	5 cut(s)	48, 513, 634, 1106, 1266
BfuAI	ACCTGC	1 cut(s)	568
BfuI	GTATCC	2 cut(s)	1031, 1192
BlpI	GCTNAGC	2 cut(s)	135, 969
Bme18I	GGWCC	2 cut(s)	1118, 1154
BmeT110I	CYCGRG	1 cut(s)	960
BmgT120I	GGNCC	4 cut(s)	242, 752, 1118, 1154
BmiI	GGNNCC	5 cut(s)	210, 754, 1120, 1156, 1301
BmrI	ACTGGG	2 cut(s)	1248, 1333
BmsI	GCATC	3 cut(s)	312, 373, 955
BmuI	ACTGGG	2 cut(s)	1248, 1333
BpiI	GAAGAC	1 cut(s)	522
Bpu10I	CCTNAGC	2 cut(s)	6, 160
Bpu1102I	GCTNAGC	2 cut(s)	135, 969
BpuEI	CTTGAG	3 cut(s)	447, 1090, 1379
BsaBI	GATNNNNATC	1 cut(s)	828
BsaI	GGTCTC	2 cut(s)	288, 1351
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 1422, 1423
Bse1I	ACTGG	5 cut(s)	212, 794, 865, 1243, 1339
Bse8I	GATNNNNATC	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	7 cut(s)	94, 190, 327, 375, 423, 653, 890
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	161, 1422, 1423
BseMII	CTCAG	7 cut(s)	126, 174, 246, 417, 983, 1300, 1362
BseNI	ACTGG	5 cut(s)	212, 794, 865, 1243, 1339
BseRI	GAGGAG	3 cut(s)	10, 541, 544
BseSI	GKGCMC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	1059
BsgI	GTGCAG	3 cut(s)	294, 363, 1114
BshFI	GGCC	4 cut(s)	165, 243, 753, 793
BsiHKAI	GWGCWC	1 cut(s)	1415
BsiHKCI	CYCGRG	1 cut(s)	960
BslI	CCNNNNNNNGG	3 cut(s)	161, 1422, 1423
BsmAI	GTCTC	5 cut(s)	94, 288, 642, 1289, 1351
BsmBI	CGTCTC	1 cut(s)	1289
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	165, 243, 753, 793
Bso31I	GGTCTC	2 cut(s)	288, 1351
BsoBI	CYCGRG	1 cut(s)	960
Bsp1286I	GDGCHC	2 cut(s)	423, 1415
Bsp143I	GATC	4 cut(s)	33, 623, 775, 829
Bsp1720I	GCTNAGC	2 cut(s)	135, 969
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	1248, 1273
BspANI	GGCC	4 cut(s)	165, 243, 753, 793
BspCNI	CTCAG	7 cut(s)	127, 173, 247, 416, 982, 1299, 1361
BspLI	GGNNCC	5 cut(s)	210, 754, 1120, 1156, 1301
BspMAI	CTGCAG	3 cut(s)	517, 1110, 1270
BspMI	ACCTGC	1 cut(s)	568
BspTNI	GGTCTC	2 cut(s)	288, 1351
BsrI	ACTGG	5 cut(s)	212, 794, 865, 1243, 1339
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	33, 623, 775, 829
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	290, 445
Bst6I	CTCTTC	1 cut(s)	1188
BstAPI	GCANNNNNTGC	2 cut(s)	281, 521
BstC8I	GCNNGC	3 cut(s)	490, 682, 1019
BstDSI	CCRYGG	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	94, 190, 327, 375, 423, 653, 890
BstKTI	GATC	4 cut(s)	36, 626, 778, 832
BstMAI	GTCTC	5 cut(s)	94, 288, 642, 1289, 1351
BstMBI	GATC	4 cut(s)	33, 623, 775, 829
BstMWI	GCNNNNNNNGC	9 cut(s)	131, 240, 249, 281, 341, 418, 521, 1065, 1399
BstNSI	RCATGY	1 cut(s)	332
BstSFI	CTRYAG	5 cut(s)	48, 513, 634, 1106, 1266
BstSLI	GKGCMC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	522
BsuI	GTATCC	2 cut(s)	1031, 1192
BsuRI	GGCC	4 cut(s)	165, 243, 753, 793
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	7 cut(s)	94, 190, 327, 375, 423, 653, 890
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	4 cut(s)	295, 441, 858, 897
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	3 cut(s)	490, 682, 1019
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr13I	GGNCC	4 cut(s)	242, 752, 1118, 1154
Csp6I	GTAC	2 cut(s)	913, 1280
CviAII	CATG	7 cut(s)	167, 329, 521, 866, 949, 1048, 1373
CviQI	GTAC	2 cut(s)	913, 1280
DpnI	GATC	4 cut(s)	35, 625, 777, 831
DpnII	GATC	4 cut(s)	33, 623, 775, 829
EaeI	YGGCCR	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	288, 1351
Eco47I	GGWCC	2 cut(s)	1118, 1154
Eco88I	CYCGRG	1 cut(s)	960
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	1289
FaeI	CATG	7 cut(s)	170, 332, 524, 869, 952, 1051, 1376
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	7 cut(s)	166, 328, 520, 865, 948, 1047, 1372
FauNDI	CATATG	1 cut(s)	1168
FokI	GGATG	7 cut(s)	101, 197, 334, 382, 410, 640, 897
FspBI	CTAG	3 cut(s)	413, 876, 1011
GsaI	CCCAGC	1 cut(s)	1063
HaeIII	GGCC	4 cut(s)	165, 243, 753, 793
Hin1II	CATG	7 cut(s)	170, 332, 524, 869, 952, 1051, 1376
HindIII	AAGCTT	2 cut(s)	986, 1066
HinfI	GANTC	5 cut(s)	814, 879, 905, 1054, 1324
HphI	GGTGA	4 cut(s)	549, 699, 1152, 1189
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	8 cut(s)	256, 369, 535, 676, 813, 884, 1351, 1407
Hpy188III	TCNNGA	7 cut(s)	197, 719, 876, 960, 962, 1141, 1396
Hpy8I	GTNNAC	1 cut(s)	913
HpyAV	CCTTC	4 cut(s)	199, 233, 638, 1416
HpyCH4III	ACNGT	2 cut(s)	290, 445
HpyCH4IV	ACGT	1 cut(s)	1282
HpyF10VI	GCNNNNNNNGC	9 cut(s)	131, 240, 249, 281, 341, 418, 521, 1065, 1399
HpySE526I	ACGT	1 cut(s)	1282
Hsp92II	CATG	7 cut(s)	170, 332, 524, 869, 952, 1051, 1376
Kzo9I	GATC	4 cut(s)	33, 623, 775, 829
LmnI	GCTCC	2 cut(s)	23, 1299
LweI	GCATC	3 cut(s)	312, 373, 955
MaeI	CTAG	3 cut(s)	413, 876, 1011
MaeII	ACGT	1 cut(s)	1282
MaeIII	GTNAC	3 cut(s)	262, 457, 700
MalI	GATC	4 cut(s)	35, 625, 777, 831
MboI	GATC	4 cut(s)	33, 623, 775, 829
MboII	GAAGA	7 cut(s)	140, 480, 522, 534, 737, 1205, 1364
MhlI	GDGCHC	2 cut(s)	423, 1415
MlsI	TGGCCA	1 cut(s)	793
MluNI	TGGCCA	1 cut(s)	793
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	793
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	793
MseI	TTAA	3 cut(s)	57, 666, 1438
MslI	CAYNNNNRTG	2 cut(s)	426, 1171
Msp20I	TGGCCA	1 cut(s)	793
MspA1I	CMGCKG	2 cut(s)	821, 1265
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	9 cut(s)	131, 240, 249, 281, 341, 418, 521, 1065, 1399
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	1168
NdeII	GATC	4 cut(s)	33, 623, 775, 829
NlaIII	CATG	7 cut(s)	170, 332, 524, 869, 952, 1051, 1376
NlaIV	GGNNCC	5 cut(s)	210, 754, 1120, 1156, 1301
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	960
PaqCI	CACCTGC	1 cut(s)	568
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	814, 879, 1054, 1324
PleI	GAGTC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	913
PpuMI	RGGWCCY	1 cut(s)	1154
Psp5II	RGGWCCY	1 cut(s)	1154
PspFI	CCCAGC	1 cut(s)	1059
PspN4I	GGNNCC	5 cut(s)	210, 754, 1120, 1156, 1301
PspPI	GGNCC	4 cut(s)	242, 752, 1118, 1154
PspPPI	RGGWCCY	1 cut(s)	1154
PstI	CTGCAG	3 cut(s)	517, 1110, 1270
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	2 cut(s)	821, 1265
RsaI	GTAC	2 cut(s)	914, 1281
RsaNI	GTAC	2 cut(s)	913, 1280
RseI	CAYNNNNRTG	2 cut(s)	426, 1171
SaqAI	TTAA	3 cut(s)	57, 666, 1438
Sau3AI	GATC	4 cut(s)	33, 623, 775, 829
Sau96I	GGNCC	4 cut(s)	242, 752, 1118, 1154
SchI	GAGTC	1 cut(s)	914
SduI	GDGCHC	2 cut(s)	423, 1415
SfaNI	GCATC	3 cut(s)	312, 373, 955
SfcI	CTRYAG	5 cut(s)	48, 513, 634, 1106, 1266
Sfr274I	CTCGAG	1 cut(s)	960
SinI	GGWCC	2 cut(s)	1118, 1154
SlaI	CTCGAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	2 cut(s)	426, 1171
SmlI	CTYRAG	4 cut(s)	462, 960, 1069, 1394
SmoI	CTYRAG	4 cut(s)	462, 960, 1069, 1394
SsiI	CCGC	2 cut(s)	1248, 1273
SspI	AATATT	1 cut(s)	1234
SspMI	CTAG	3 cut(s)	413, 876, 1011
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	290, 445
TaiI	ACGT	1 cut(s)	1285
TaqI	TCGA	2 cut(s)	622, 961
TfiI	GAWTC	4 cut(s)	814, 879, 1054, 1324
Tru1I	TTAA	3 cut(s)	57, 666, 1438
Tru9I	TTAA	3 cut(s)	57, 666, 1438
TscAI	CASTG	4 cut(s)	295, 448, 865, 897
TspDTI	ATGAA	3 cut(s)	252, 509, 1227
TspGWI	ACGGA	3 cut(s)	416, 626, 941
TspRI	CASTG	4 cut(s)	295, 448, 865, 897
VpaK11BI	GGWCC	2 cut(s)	1118, 1154
XagI	CCTNNNNNAGG	1 cut(s)	159
XapI	RAATTY	2 cut(s)	614, 1031
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1170
XhoI	CTCGAG	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	3 cut(s)	413, 876, 1011
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.