Rmu_co8467135.1_g000001

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8467135.1
OG0001908
Physical Location & Seq
Reverse (-)
1 .. 968
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8467135.1_g000001.1.cds

Sequence Viewer

Length: 293 bp
atggctaagctacaacaaagcttctacgtcgtgtgcctggcattttctgtagttctaaatctgtcgttgatcttcaagctctatggacatggaggtcagtgggagctcagttggagcagaagggcagcagaagaagccgagggcgtcgccgccatcccttgctcggggcatggcagagccttcttggatggcttggttcttgatggcaagcaacctggttgtgagtgcaattcttgctatggaggctcagattgctctcagttctttgctgattgtgaagcaaatgctgacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

97

Amino Acids

10.42

Weight (kDa)

4.77

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 93
AciI CCGC 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 36, 214
AluBI AGCT 4 cut(s) 10, 21, 79, 106
AluI AGCT 4 cut(s) 10, 21, 79, 106
Alw21I GWGCWC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 163
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 137
BccI CCATC 3 cut(s) 161, 182, 197
BciT130I CCWGG 2 cut(s) 38, 216
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 126, 150
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 127, 151
Bme1390I CCNGG 2 cut(s) 38, 216
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 38, 216
Bpu1102I GCTNAGC 1 cut(s) 6
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
BseBI CCWGG 2 cut(s) 38, 216
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 153, 193
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseMII CTCAG 3 cut(s) 121, 261, 272
BseXI GCAGC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 163, 164
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 120, 260, 271
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 38, 216
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 6, 107, 247, 258
BstF5I GGATG 2 cut(s) 153, 193
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 134, 234, 243, 252
BstNI CCWGG 2 cut(s) 38, 216
BstSCI CCNGG 2 cut(s) 36, 214
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 153, 193
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 209
CseI GACGC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 214
CviAII CATG 2 cut(s) 89, 170
CviJI RGCY 9 cut(s) 5, 10, 21, 79, 106, 137, 179, 192, 246
CviKI_1 RGCY 9 cut(s) 5, 10, 21, 79, 106, 137, 179, 192, 246
DdeI CTNAG 4 cut(s) 6, 107, 247, 258
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 36, 214
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 92, 173
FaiI YATR 4 cut(s) 84, 90, 171, 240
FatI CATG 2 cut(s) 88, 169
Fnu4HI GCNGC 2 cut(s) 126, 150
FokI GGATG 2 cut(s) 140, 200
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 126, 150
GluI GCNGC 2 cut(s) 126, 150
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 92, 173
HindIII AAGCTT 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 2 cut(s) 32, 149
HpyAV CCTTC 2 cut(s) 114, 190
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 234, 243, 252
HpyF3I CTNAG 4 cut(s) 6, 107, 247, 258
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 92, 173
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 103, 114
LpnPI CCDG 4 cut(s) 23, 50, 201, 228
Lsp1109I GCAGC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 214
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 64, 143
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 3 cut(s) 86, 133, 236
MspR9I CCNGG 2 cut(s) 38, 216
MvaI CCWGG 2 cut(s) 38, 216
MwoI GCNNNNNNNGC 4 cut(s) 134, 234, 243, 252
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 92, 173
NmeAIII GCCGAG 1 cut(s) 163
PkrI GCNGC 2 cut(s) 127, 151
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 36, 214
PspGI CCWGG 2 cut(s) 36, 214
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 2 cut(s) 126, 150
Sau3AI GATC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 38, 216
SduI GDGCHC 1 cut(s) 108
SetI ASST 7 cut(s) 12, 23, 30, 81, 97, 108, 217
SexAI ACCWGGT 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 150
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 36, 214
TaiI ACGT 1 cut(s) 30
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 152
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.