Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4542407 .. 4545594

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1035100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAACTATGTCTTCCCTGATCAATCTCGCATCTCAGCAGAGCTTGAGAGGCACATCCGCGAAATTCATACCATTGTCGGAAATGCGGTCACTGAAGGGAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCTCTTTACCAAATGCAAACGGAGTTTTTCCGATCAATGGACTATATGTTTCAAGGAGATGCTGCCTTGCTGCAGAATACTTCGGATGCTACTAAAAATGTTGTTGAGTTTGTAACCTCACCAAACAATCCAGATGGGCAGCTGAAGAAGGCAATTTTTCAAGGCCCGAATGCTAAGGCAATCTATGATCGTGTATACTACTGGCCACATTTTACAGCAATTCCTGCTCCAGCAGATGACGATCTCATGATATTTACAATTTCTAAACTCACTGGCCATGCCGGTACTAGATTCGGGTGGGCATTGGTAAAGGATGAGTCTGTGTACCAAAGGATCACCCAGCATATACTCATGAGTAGCTTAGGTATTTCTCGAGATGCTCAGCTAAGAGCTTTGAAGCTTCTAAATGTCGTCCTTGAAACCGGAGGCAGGGAAATCTTTACCTATGCATGGGTGAAGTGCGAGAGGGAAGAGGATAAAGATTGCTATGAAGTTCTGAAACAAGAAGCGAATGTTAATGGTCGTCCAGGTGCTGAATTTGGAGCTGAAGATCGATATGTTCGTCTCACCCTCTTAAGGACCCAAGATGATTTTGATTTATTGCTTCAGCGACTCAACCAATTGGTCCTGGATGAAAGTAAGAGCAAAATAATTATTTCTTCTCAAGTAGGGGGTCAATACGTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

278

Amino Acids

31.39

Weight (kDa)

5.46

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alliinase_C	PF04864	1 - 53	3e-15	Allinase
Alliinase_C	PF04864	49 - 190	1.2e-57	Allinase
Alliinase_C	PF04864	196 - 257	4.1e-18	Allinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	58, 86
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	347, 418
AcsI	RAATTY	2 cut(s)	63, 680
AcuI	CTGAAG	4 cut(s)	114, 308, 711, 734
AfaI	GTAC	2 cut(s)	430, 470
AfiI	CCNNNNNNNGG	4 cut(s)	181, 573, 594, 720
AflII	CTTAAG	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	197, 305, 541, 563
AjnI	CCWGG	2 cut(s)	670, 771
AluBI	AGCT	7 cut(s)	43, 286, 504, 529, 536, 544, 689
AluI	AGCT	7 cut(s)	43, 286, 504, 529, 536, 544, 689
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	485
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	3 cut(s)	307, 347, 418
ApeKI	GCWGC	4 cut(s)	143, 206, 214, 283
ApoI	RAATTY	2 cut(s)	63, 680
AspS9I	GGNCC	3 cut(s)	308, 723, 769
AsuHPI	GGTGA	4 cut(s)	255, 472, 610, 703
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	2 cut(s)	723, 769
BalI	TGGCCA	2 cut(s)	349, 420
BbsI	GAAGAC	1 cut(s)	4
BbvI	GCAGC	4 cut(s)	130, 193, 201, 295
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	672, 773
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	718
BisI	GCNGC	4 cut(s)	144, 207, 215, 284
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	4 cut(s)	145, 208, 216, 285
Bme1390I	CCNGG	2 cut(s)	672, 773
Bme18I	GGWCC	2 cut(s)	723, 769
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	308, 723, 769
BmiI	GGNNCC	1 cut(s)	725
BmrFI	CCNGG	2 cut(s)	672, 773
BmsI	GCATC	4 cut(s)	39, 193, 220, 511
BpiI	GAAGAC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	318, 505
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	65, 792
Bsa29I	ATCGAT	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 573, 594, 720
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	350, 421
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	672, 773
BseCI	ATCGAT	1 cut(s)	697
BseGI	GGATG	4 cut(s)	54, 235, 463, 781
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	4 cut(s)	181, 573, 594, 720
BseMII	CTCAG	2 cut(s)	48, 539
BseNI	ACTGG	2 cut(s)	350, 421
BseXI	GCAGC	4 cut(s)	130, 193, 201, 295
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	309, 349, 420
BshVI	ATCGAT	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	426, 567
BslI	CCNNNNNNNGG	4 cut(s)	181, 573, 594, 720
BsmAI	GTCTC	1 cut(s)	713
BsmBI	CGTCTC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	309, 349, 420
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	2 cut(s)	58, 86
BspANI	GGCC	3 cut(s)	309, 349, 420
BspCNI	CTCAG	2 cut(s)	47, 538
BspDI	ATCGAT	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	2 cut(s)	390, 495
BspLI	GGNNCC	1 cut(s)	725
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	1 cut(s)	485
BspTI	CTTAAG	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	350, 421
BssAI	RCCGGY	1 cut(s)	425
BssMI	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	672, 773
Bst6I	CTCTTC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	5 cut(s)	34, 318, 505, 525, 530
BstF5I	GGATG	4 cut(s)	54, 235, 463, 781
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	6 cut(s)	22, 179, 334, 388, 480, 697
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 368
BstNI	CCWGG	2 cut(s)	672, 773
BstSCI	CCNGG	2 cut(s)	670, 771
BstSFI	CTRYAG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	130, 193, 201, 295
BstV2I	GAAGAC	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	309, 349, 420
BsuTUI	ATCGAT	1 cut(s)	697
BtsCI	GGATG	4 cut(s)	54, 235, 463, 781
BtsIMutI	CAGTG	2 cut(s)	90, 414
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	2 cut(s)	390, 495
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	308, 723, 769
ClaI	ATCGAT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	429, 469
CviAII	CATG	4 cut(s)	391, 422, 496, 594
CviQI	GTAC	2 cut(s)	429, 469
DdeI	CTNAG	5 cut(s)	34, 318, 505, 525, 530
DpnI	GATC	6 cut(s)	21, 178, 333, 387, 479, 696
DpnII	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
EaeI	YGGCCR	2 cut(s)	347, 418
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	723, 769
Eco57I	CTGAAG	4 cut(s)	114, 308, 711, 734
Eco88I	CYCGRG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	670, 771
EcoT22I	ATGCAT	1 cut(s)	595
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	4 cut(s)	394, 425, 499, 597
FatI	CATG	4 cut(s)	390, 421, 495, 593
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	144, 207, 215, 284
FokI	GGATG	4 cut(s)	41, 242, 470, 788
Fsp4HI	GCNGC	4 cut(s)	144, 207, 215, 284
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	4 cut(s)	144, 207, 215, 284
GsaI	CCCAGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	309, 349, 420
HapII	CCGG	2 cut(s)	426, 567
Hin1II	CATG	4 cut(s)	394, 425, 499, 597
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	435, 461, 756
HpaII	CCGG	2 cut(s)	426, 567
HphI	GGTGA	4 cut(s)	255, 472, 610, 703
Hpy166II	GTNNAC	2 cut(s)	340, 469
Hpy188I	TCNGA	4 cut(s)	80, 176, 229, 642
Hpy188III	TCNNGA	5 cut(s)	275, 391, 496, 516, 518
Hpy8I	GTNNAC	2 cut(s)	340, 469
HpyAV	CCTTC	2 cut(s)	89, 286
HpyCH4IV	ACGT	1 cut(s)	825
HpyCH4V	TGCA	3 cut(s)	160, 217, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 368
HpyF3I	CTNAG	5 cut(s)	34, 318, 505, 525, 530
HpySE526I	ACGT	1 cut(s)	825
Hsp92II	CATG	4 cut(s)	394, 425, 499, 597
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
LmnI	GCTCC	2 cut(s)	376, 686
Lsp1109I	GCAGC	4 cut(s)	130, 193, 201, 295
LweI	GCATC	4 cut(s)	39, 193, 220, 511
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	825
MaeIII	GTNAC	3 cut(s)	88, 256, 826
MalI	GATC	6 cut(s)	21, 178, 333, 387, 479, 696
MboI	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
MboII	GAAGA	5 cut(s)	4, 301, 626, 704, 795
MfeI	CAATTG	1 cut(s)	764
MlsI	TGGCCA	2 cut(s)	349, 420
MluCI	AATT	7 cut(s)	63, 297, 363, 402, 680, 764, 795
MluNI	TGGCCA	2 cut(s)	349, 420
MlyI	GAGTC	2 cut(s)	470, 750
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	42, 271, 563, 603, 610, 725
Mox20I	TGGCCA	2 cut(s)	349, 420
Mph1103I	ATGCAT	1 cut(s)	595
MscI	TGGCCA	2 cut(s)	349, 420
MseI	TTAA	2 cut(s)	660, 719
Msp20I	TGGCCA	2 cut(s)	349, 420
MspA1I	CMGCKG	1 cut(s)	286
MspCI	CTTAAG	1 cut(s)	718
MspI	CCGG	2 cut(s)	426, 567
MspR9I	CCNGG	2 cut(s)	672, 773
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	672, 773
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	49, 368
NdeII	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
NlaIII	CATG	4 cut(s)	394, 425, 499, 597
NlaIV	GGNNCC	1 cut(s)	725
NmuCI	GTSAC	2 cut(s)	88, 826
NsiI	ATGCAT	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	516
PagI	TCATGA	2 cut(s)	390, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	4 cut(s)	145, 208, 216, 285
PleI	GAGTC	2 cut(s)	469, 750
PpsI	GAGTC	2 cut(s)	469, 750
Ppu21I	YACGTR	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	670, 771
PspFI	CCCAGC	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	670, 771
PspN4I	GGNNCC	1 cut(s)	725
PspPI	GGNCC	3 cut(s)	308, 723, 769
PspPPI	RGGWCCY	1 cut(s)	723
PstI	CTGCAG	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	430, 470
RsaNI	GTAC	2 cut(s)	429, 469
SaqAI	TTAA	2 cut(s)	660, 719
SatI	GCNGC	4 cut(s)	144, 207, 215, 284
Sau3AI	GATC	6 cut(s)	19, 176, 331, 385, 477, 694
Sau96I	GGNCC	3 cut(s)	308, 723, 769
SchI	GAGTC	2 cut(s)	470, 750
ScrFI	CCNGG	2 cut(s)	672, 773
SfaNI	GCATC	4 cut(s)	39, 193, 220, 511
SfcI	CTRYAG	1 cut(s)	215
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	723, 769
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	4 cut(s)	44, 516, 718, 807
SmoI	CTYRAG	4 cut(s)	44, 516, 718, 807
Sse9I	AATT	7 cut(s)	63, 297, 363, 402, 680, 764, 795
SsiI	CCGC	2 cut(s)	58, 86
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	670, 771
TaiI	ACGT	1 cut(s)	828
TaqI	TCGA	2 cut(s)	517, 697
TasI	AATT	7 cut(s)	63, 297, 363, 402, 680, 764, 795
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	2 cut(s)	660, 719
Tru9I	TTAA	2 cut(s)	660, 719
TscAI	CASTG	2 cut(s)	97, 421
TseFI	GTSAC	2 cut(s)	88, 826
TseI	GCWGC	4 cut(s)	143, 206, 214, 283
Tsp45I	GTSAC	2 cut(s)	88, 826
TspDTI	ATGAA	4 cut(s)	17, 56, 648, 792
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	97, 421
Vha464I	CTTAAG	1 cut(s)	718
VpaK11BI	GGWCC	2 cut(s)	723, 769
XapI	RAATTY	2 cut(s)	63, 680
XhoI	CTCGAG	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.