Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001939.1

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

72989 .. 76199

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001939.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atggacatggaggtcagtgggagctcagttggagcagaagggcagcagaagaagccgagtacgtcgccgccgtcccttgctcggggcatggcagaacctacttggatggcttggttcttgatggcaagcaacccgcttgtgagtgcaattcttgctatggaggctcagattgttctcaagcccttttggatgcaacatgcttctgaaagtgcaattctagtagcagggtggcatcgaatgggctatactttccctgatcaggcttacatctcacaagagcttgagaggctcatccgcaaagtacacgacattgctggtaatgcagtcactcaaggaaggtacattgtaattggtgctggctcaacccatctcctcaacgctgcagttaaagcgctctctttctcatcaaccagtagtttcaactcatcatcatcctcacctgctagtgttgttgtttcaattcctttttacgcgctttatgaagcgcaaacggaatacttccgatcagtggattacaagtttgaaggggatggttcgttgctgcagaacatcacagatggaactaagagggttattgagtttgtaaccgcaccaaacaatcctgatgggaagctaaataaagcaaattttcaaggaccaaattccgaagcaatctatgatcgtgtttattattggccacatttcacaccaattccaactccagcaaatgacaatgtcatggtgttttcaatttccaagctcacaggccatgctggtacaagattagggtgggcagtgataaaggatgaggaagtgtaccaaagaatgttgcagcatactctgacaagtaacttgggtatttctcgcgatgctcagctaagagctttgaagcttttgaaagtaatcgtagaaggtggaggaaaagaaattttccaattcggatacaccactatgaggaaccgttgggaaaatttgagtaacgccctgtctctgtcaaaccgcttttctctgcagaaagttgaacctcagtactgcacttttttccagaaaattagaggaccatctcctgcctttgcgtgggtgaagtgcgagagggaagaggataaagattgctacacagtcctcaaagaagaagctaatgtttacggccgtagtggaagtgtctttggtgctgaagatcgatatgtacgtctcgccctcataaggagccaagatgatttcgatatattgctttaccgactgaaccagttagtctccaaggaagatgcacagccccaaatttatatgaaaaatgtgacaaacccatcactttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

431

Amino Acids

48.2

Weight (kDa)

7.06

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	448
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	448
AccII	CGCG	2 cut(s)	473, 846
AciI	CCGC	5 cut(s)	68, 134, 295, 588, 979
AcoI	YGGCCR	2 cut(s)	674, 1126
AcsI	RAATTY	5 cut(s)	625, 640, 906, 949, 1257
AcuI	CTGAAG	1 cut(s)	1173
AfaI	GTAC	7 cut(s)	61, 303, 341, 757, 797, 1010, 1167
AfeI	AGCGCT	1 cut(s)	393
AfiI	CCNNNNNNNGG	7 cut(s)	81, 82, 259, 508, 933, 1056, 1182
AgsI	TTSAA	8 cut(s)	421, 459, 524, 632, 729, 868, 877, 1001
AluBI	AGCT	8 cut(s)	24, 280, 613, 739, 856, 863, 871, 1115
AluI	AGCT	8 cut(s)	24, 280, 613, 739, 856, 863, 871, 1115
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	3 cut(s)	972, 1175, 1237
Ama87I	CYCGRG	1 cut(s)	81
Aor51HI	AGCGCT	1 cut(s)	393
AoxI	GGCC	3 cut(s)	674, 745, 1126
ApeKI	GCWGC	4 cut(s)	43, 380, 541, 811
ApoI	RAATTY	5 cut(s)	625, 640, 906, 949, 1257
AspLEI	GCGC	3 cut(s)	394, 475, 487
AspS9I	GGNCC	2 cut(s)	635, 1037
AsuHPI	GGTGA	2 cut(s)	429, 1072
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	635, 1037
BalI	TGGCCA	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	55, 367, 528, 823
BccI	CCATC	8 cut(s)	100, 115, 375, 524, 551, 599, 1048, 1291
BceAI	ACGGC	3 cut(s)	55, 1113, 1141
BciVI	GTATCC	1 cut(s)	914
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	972, 1175, 1237
BfaI	CTAG	2 cut(s)	218, 444
BfmI	CTRYAG	3 cut(s)	381, 542, 989
BfoI	RGCGCY	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	5 cut(s)	44, 68, 381, 542, 812
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	5 cut(s)	45, 69, 382, 543, 813
BmcAI	AGTACT	1 cut(s)	1010
Bme18I	GGWCC	2 cut(s)	635, 1037
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	635, 1037
BmiI	GGNNCC	2 cut(s)	938, 1187
BmsI	GCATC	4 cut(s)	180, 241, 838, 1234
BpmI	CTGGAG	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	3 cut(s)	161, 302, 315
Bsa29I	ATCGAT	1 cut(s)	1159
BsaJI	CCNNGG	1 cut(s)	1236
Bsc4I	CCNNNNNNNGG	7 cut(s)	81, 82, 259, 508, 933, 1056, 1182
Bse1I	ACTGG	2 cut(s)	411, 1225
Bse3DI	GCAATG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	1159
BseDI	CCNNGG	1 cut(s)	1236
BseGI	GGATG	6 cut(s)	111, 195, 291, 431, 535, 790
BseLI	CCNNNNNNNGG	7 cut(s)	81, 82, 259, 508, 933, 1056, 1182
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	39, 179, 866, 1019
BseNI	ACTGG	2 cut(s)	411, 1225
BseRI	GAGGAG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	1126
BseXI	GCAGC	4 cut(s)	55, 367, 528, 823
BsgI	GTGCAG	1 cut(s)	997
Bsh1236I	CGCG	2 cut(s)	473, 846
Bsh1285I	CGRYCG	1 cut(s)	1129
BshFI	GGCC	3 cut(s)	676, 747, 1128
BshVI	ATCGAT	1 cut(s)	1159
BsiEI	CGRYCG	1 cut(s)	1129
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	7 cut(s)	81, 82, 259, 508, 933, 1056, 1182
BsmAI	GTCTC	3 cut(s)	972, 1175, 1237
BsmBI	CGTCTC	1 cut(s)	1175
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	676, 747, 1128
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	256, 503, 658, 1156
Bsp1720I	GCTNAGC	1 cut(s)	852
Bsp68I	TCGCGA	1 cut(s)	846
BspACI	CCGC	5 cut(s)	68, 134, 295, 588, 979
BspANI	GGCC	3 cut(s)	676, 747, 1128
BspCNI	CTCAG	4 cut(s)	38, 178, 865, 1018
BspDI	ATCGAT	1 cut(s)	1159
BspFNI	CGCG	2 cut(s)	473, 846
BspLI	GGNNCC	2 cut(s)	938, 1187
BspMAI	CTGCAG	3 cut(s)	385, 546, 993
BspMI	ACCTGC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	411, 1225
BssECI	CCNNGG	1 cut(s)	1236
BssMI	GATC	4 cut(s)	256, 503, 658, 1156
BssT1I	CCWWGG	1 cut(s)	1236
Bst4CI	ACNGT	2 cut(s)	941, 1099
Bst6I	CTCTTC	1 cut(s)	1071
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	127, 358
BstDEI	CTNAG	7 cut(s)	25, 165, 564, 852, 857, 1005, 1293
BstF5I	GGATG	6 cut(s)	111, 195, 291, 431, 535, 790
BstFNI	CGCG	2 cut(s)	473, 846
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	3 cut(s)	394, 475, 487
BstKTI	GATC	4 cut(s)	259, 506, 661, 1159
BstMAI	GTCTC	3 cut(s)	972, 1175, 1237
BstMBI	GATC	4 cut(s)	256, 503, 658, 1156
BstMCI	CGRYCG	1 cut(s)	1129
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 152, 161, 286, 320, 389
BstNSI	RCATGY	1 cut(s)	200
BstSFI	CTRYAG	3 cut(s)	381, 542, 989
BstUI	CGCG	2 cut(s)	473, 846
BstV1I	GCAGC	4 cut(s)	55, 367, 528, 823
BstZI	CGGCCG	1 cut(s)	1126
Bsu15I	ATCGAT	1 cut(s)	1159
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	3 cut(s)	676, 747, 1128
BsuTUI	ATCGAT	1 cut(s)	1159
BtgZI	GCGATG	1 cut(s)	861
BtsCI	GGATG	6 cut(s)	111, 195, 291, 431, 535, 790
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	22, 513, 780
BtuMI	TCGCGA	1 cut(s)	846
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	127, 358
CfoI	GCGC	3 cut(s)	394, 475, 487
Cfr13I	GGNCC	2 cut(s)	635, 1037
ClaI	ATCGAT	1 cut(s)	1159
Csp6I	GTAC	7 cut(s)	60, 302, 340, 756, 796, 1009, 1166
CviAII	CATG	5 cut(s)	7, 88, 197, 718, 749
CviQI	GTAC	7 cut(s)	60, 302, 340, 756, 796, 1009, 1166
DdeI	CTNAG	7 cut(s)	25, 165, 564, 852, 857, 1005, 1293
DpnI	GATC	4 cut(s)	258, 505, 660, 1158
DpnII	GATC	4 cut(s)	256, 503, 658, 1156
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	2 cut(s)	674, 1126
EagI	CGGCCG	1 cut(s)	1126
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
Ecl136II	GAGCTC	1 cut(s)	24
EclXI	CGGCCG	1 cut(s)	1126
Eco130I	CCWWGG	1 cut(s)	1236
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	635, 1037
Eco47III	AGCGCT	1 cut(s)	393
Eco52I	CGGCCG	1 cut(s)	1126
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	1173
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	1236
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	1236
Esp3I	CGTCTC	1 cut(s)	1175
FaeI	CATG	5 cut(s)	10, 91, 200, 721, 752
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	5 cut(s)	6, 87, 196, 717, 748
FauI	CCCGC	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	5 cut(s)	44, 68, 381, 542, 812
FokI	GGATG	6 cut(s)	118, 202, 278, 418, 542, 797
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	44, 68, 381, 542, 812
FspBI	CTAG	2 cut(s)	218, 444
GlaI	GCGC	3 cut(s)	393, 474, 486
GluI	GCNGC	5 cut(s)	44, 68, 381, 542, 812
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	676, 747, 1128
HhaI	GCGC	3 cut(s)	394, 475, 487
Hin1II	CATG	5 cut(s)	10, 91, 200, 721, 752
Hin6I	GCGC	3 cut(s)	392, 473, 485
HinP1I	GCGC	3 cut(s)	392, 473, 485
HindIII	AAGCTT	1 cut(s)	869
HphI	GGTGA	2 cut(s)	429, 1072
Hpy166II	GTNNAC	3 cut(s)	304, 796, 1123
Hpy188I	TCNGA	6 cut(s)	168, 205, 503, 646, 822, 920
Hpy188III	TCNNGA	4 cut(s)	118, 602, 845, 1024
Hpy8I	GTNNAC	3 cut(s)	304, 796, 1123
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	32, 330, 518, 884
HpyCH4III	ACNGT	2 cut(s)	941, 1099
HpyCH4IV	ACGT	2 cut(s)	62, 1168
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 152, 161, 286, 320, 389
HpyF3I	CTNAG	7 cut(s)	25, 165, 564, 852, 857, 1005, 1293
HpySE526I	ACGT	2 cut(s)	62, 1168
Hsp92II	CATG	5 cut(s)	10, 91, 200, 721, 752
HspAI	GCGC	3 cut(s)	392, 473, 485
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	256, 503, 658, 1156
LmnI	GCTCC	3 cut(s)	21, 32, 1185
Lsp1109I	GCAGC	4 cut(s)	55, 367, 528, 823
LweI	GCATC	4 cut(s)	180, 241, 838, 1234
MaeI	CTAG	2 cut(s)	218, 444
MaeII	ACGT	2 cut(s)	62, 1168
MaeIII	GTNAC	5 cut(s)	325, 583, 827, 956, 1273
MalI	GATC	4 cut(s)	258, 505, 660, 1158
MboI	GATC	4 cut(s)	256, 503, 658, 1156
MboII	GAAGA	5 cut(s)	61, 1088, 1121, 1166, 1253
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	676
MluNI	TGGCCA	1 cut(s)	676
MmeI	TCCRAC	2 cut(s)	10, 719
Mox20I	TGGCCA	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	676
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	929
Msp20I	TGGCCA	1 cut(s)	676
MvnI	CGCG	2 cut(s)	473, 846
MwoI	GCNNNNNNNGC	6 cut(s)	52, 152, 161, 286, 320, 389
NdeII	GATC	4 cut(s)	256, 503, 658, 1156
NlaIII	CATG	5 cut(s)	10, 91, 200, 721, 752
NlaIV	GGNNCC	2 cut(s)	938, 1187
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	325, 1273
NruI	TCGCGA	1 cut(s)	846
NspI	RCATGY	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 1165
PflFI	GACNNNGTC	1 cut(s)	713
PkrI	GCNGC	5 cut(s)	45, 69, 382, 543, 813
Psp124BI	GAGCTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	938, 1187
PspPI	GGNCC	2 cut(s)	635, 1037
PstI	CTGCAG	3 cut(s)	385, 546, 993
PsyI	GACNNNGTC	1 cut(s)	713
RruI	TCGCGA	1 cut(s)	846
RsaI	GTAC	7 cut(s)	61, 303, 341, 757, 797, 1010, 1167
RsaNI	GTAC	7 cut(s)	60, 302, 340, 756, 796, 1009, 1166
RseI	CAYNNNNRTG	1 cut(s)	929
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	44, 68, 381, 542, 812
Sau3AI	GATC	4 cut(s)	256, 503, 658, 1156
Sau96I	GGNCC	2 cut(s)	635, 1037
ScaI	AGTACT	1 cut(s)	1010
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	4 cut(s)	180, 241, 838, 1234
SfcI	CTRYAG	3 cut(s)	381, 542, 989
SinI	GGWCC	2 cut(s)	635, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	3 cut(s)	176, 281, 330
SmoI	CTYRAG	3 cut(s)	176, 281, 330
SsiI	CCGC	5 cut(s)	68, 134, 295, 588, 979
SspMI	CTAG	2 cut(s)	218, 444
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	1236
TaaI	ACNGT	2 cut(s)	941, 1099
TaiI	ACGT	2 cut(s)	65, 1171
TaqI	TCGA	3 cut(s)	235, 1159, 1200
TatI	WGTACW	2 cut(s)	301, 1008
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	22, 513, 780
TseFI	GTSAC	2 cut(s)	325, 1273
TseI	GCWGC	4 cut(s)	43, 380, 541, 811
Tsp45I	GTSAC	2 cut(s)	325, 1273
TspDTI	ATGAA	2 cut(s)	495, 1280
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	3 cut(s)	22, 513, 780
Tth111I	GACNNNGTC	1 cut(s)	713
VpaK11BI	GGWCC	2 cut(s)	635, 1037
XapI	RAATTY	5 cut(s)	625, 640, 906, 949, 1257
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	2 cut(s)	218, 444
ZrmI	AGTACT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.