Rorug06G0079700

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001908
Physical Location & Seq
Forward (+)
10676298 .. 10679615
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0079700.1

Sequence Viewer

Length: 426 bp
ATGGTTTCAGGGGAGCTCGCAGCGCATGCCTTTGAATTTGATTACCTGAACCTTCATCTTGATGACGACGCCGTCCGAGATGTCCAGAGTCTTCGTCCGGCAACAGCAACGCCGCCATCGACGCCTGATCAAGGCATGAGGATGGACATTTGCACTCTTGCATCTGTCCGGACGTCCGTTTCTGATCCGGCCTCTCCGTTGCAGGGAAACTTCCATATCCAGAAGAGTCGCTGCTCTGCTTGTGCATACCCAGCTGTCCGCACCAGGAAATTCAATTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACTGGAAGGATGTGGTATCTGTGCAATGTCCCACGCAGGTTGGATTCAGTGATCTGTGACTTTGGATCTGGTTGGAAAGCCACTGATTGCATAGTGAGATTACATCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

141

Amino Acids

15.71

Weight (kDa)

9.05

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37e PF01907 71 - 97 7.5e-10 Ribosomal protein L37e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 2 cut(s) 113, 259
AclWI GGATC 2 cut(s) 179, 385
AcsI RAATTY 2 cut(s) 35, 269
AcyI GRCGYC 3 cut(s) 69, 122, 173
AfiI CCNNNNNNNGG 3 cut(s) 131, 203, 297
AgsI TTSAA 2 cut(s) 35, 274
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 2 cut(s) 16, 254
AluI AGCT 2 cut(s) 16, 254
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 2 cut(s) 179, 385
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 2 cut(s) 189, 288
ApeKI GCWGC 2 cut(s) 20, 231
ApoI RAATTY 2 cut(s) 35, 269
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 310
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 2 cut(s) 83, 308
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 32, 218
BccI CCATC 3 cut(s) 124, 136, 299
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 339
BisI GCNGC 3 cut(s) 21, 113, 232
BlsI GCNGC 3 cut(s) 22, 114, 233
Bme1390I CCNGG 2 cut(s) 265, 310
BmrFI CCNGG 2 cut(s) 265, 310
BmsI GCATC 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 83, 308
BpuMI CCSGG 1 cut(s) 310
BsaHI GRCGYC 3 cut(s) 69, 122, 173
BsaWI WCCGGW 1 cut(s) 168
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 203, 297
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 265
BseGI GGATG 3 cut(s) 147, 327, 415
BseLI CCNNNNNNNGG 3 cut(s) 131, 203, 297
BseMI GCAATG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 32, 218
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 191, 290
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 98, 169, 188, 309
BslFI GGGAC 2 cut(s) 325, 326
BslI CCNNNNNNNGG 3 cut(s) 131, 203, 297
BsmFI GGGAC 2 cut(s) 325, 326
BsnI GGCC 2 cut(s) 191, 290
Bsp1286I GDGCHC 1 cut(s) 18
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 4 cut(s) 127, 184, 363, 377
BspACI CCGC 2 cut(s) 113, 259
BspANI GGCC 2 cut(s) 191, 290
BspEI TCCGGA 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 339
BspPI GGATC 2 cut(s) 179, 385
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 319
BssMI GATC 4 cut(s) 127, 184, 363, 377
BssNI GRCGYC 3 cut(s) 69, 122, 173
Bst2UI CCWGG 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 3 cut(s) 69, 122, 173
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 18, 27
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 147, 327, 415
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 4 cut(s) 130, 187, 366, 380
BstMBI GATC 4 cut(s) 127, 184, 363, 377
BstMWI GCNNNNNNNGC 4 cut(s) 22, 26, 121, 251
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 263, 308
BstV1I GCAGC 2 cut(s) 32, 218
BstV2I GAAGAC 2 cut(s) 83, 308
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 191, 290
BtsCI GGATG 3 cut(s) 147, 327, 415
BtsIMutI CAGTG 2 cut(s) 366, 393
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 18, 27
CfoI GCGC 1 cut(s) 25
CseI GACGC 2 cut(s) 77, 130
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 2 cut(s) 26, 136
CviJI RGCY 5 cut(s) 16, 191, 254, 290, 392
CviKI_1 RGCY 5 cut(s) 16, 191, 254, 290, 392
DpnI GATC 4 cut(s) 129, 186, 365, 379
DpnII GATC 4 cut(s) 127, 184, 363, 377
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 2 cut(s) 29, 139
FaiI YATR 5 cut(s) 27, 137, 216, 247, 404
FaqI GGGAC 2 cut(s) 325, 326
FatI CATG 2 cut(s) 25, 135
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 21, 113, 232
FokI GGATG 3 cut(s) 154, 334, 402
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 3 cut(s) 21, 113, 232
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 21, 113, 232
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 191, 290
HapII CCGG 4 cut(s) 98, 169, 188, 309
HgaI GACGC 2 cut(s) 77, 130
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 3 cut(s) 69, 122, 173
Hin1II CATG 2 cut(s) 29, 139
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 3 cut(s) 88, 226, 356
HpaII CCGG 4 cut(s) 98, 169, 188, 309
Hpy188I TCNGA 2 cut(s) 77, 184
Hpy188III TCNNGA 5 cut(s) 59, 85, 169, 220, 295
Hpy99I CGWCG 2 cut(s) 71, 124
HpyAV CCTTC 3 cut(s) 62, 280, 312
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 6 cut(s) 153, 161, 202, 245, 336, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 26, 121, 251
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 3 cut(s) 69, 122, 173
Hsp92II CATG 2 cut(s) 29, 139
HspAI GCGC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 4 cut(s) 127, 184, 363, 377
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 32, 218
LweI GCATC 1 cut(s) 170
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 368
MalI GATC 4 cut(s) 129, 186, 365, 379
MboI GATC 4 cut(s) 127, 184, 363, 377
MboII GAAGA 3 cut(s) 83, 235, 313
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 3 cut(s) 35, 269, 274
MlyI GAGTC 2 cut(s) 97, 235
MmeI TCCRAC 2 cut(s) 333, 365
MnlI CCTC 3 cut(s) 132, 202, 291
MroI TCCGGA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 60, 140
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 4 cut(s) 98, 169, 188, 309
MspR9I CCNGG 2 cut(s) 265, 310
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 4 cut(s) 22, 26, 121, 251
NciI CCSGG 1 cut(s) 310
NdeII GATC 4 cut(s) 127, 184, 363, 377
NlaIII CATG 2 cut(s) 29, 139
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 1 cut(s) 356
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 22, 114, 233
PleI GAGTC 2 cut(s) 96, 234
PpsI GAGTC 2 cut(s) 96, 234
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 254
RseI CAYNNNNRTG 2 cut(s) 60, 140
SacI GAGCTC 1 cut(s) 18
SatI GCNGC 3 cut(s) 21, 113, 232
Sau3AI GATC 4 cut(s) 127, 184, 363, 377
SchI GAGTC 2 cut(s) 97, 235
ScrFI CCNGG 2 cut(s) 265, 310
SduI GDGCHC 1 cut(s) 18
SetI ASST 6 cut(s) 18, 48, 54, 176, 256, 353
SfaNI GCATC 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 60, 140
SphI GCATGC 1 cut(s) 29
Sse9I AATT 3 cut(s) 35, 269, 274
SsiI CCGC 2 cut(s) 113, 259
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 263, 308
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 119
TasI AATT 3 cut(s) 35, 269, 274
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 2 cut(s) 366, 400
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 20, 231
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 2 cut(s) 166, 186
TspRI CASTG 2 cut(s) 366, 400
Tth111I GACNNNGTC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 2 cut(s) 35, 269
XceI RCATGY 1 cut(s) 29
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.