Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001908

Physical Location & Seq

Genomic Coordinates Reverse (-)

2672843 .. 2677579

Gene Structure 4737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTAAAGCACAAAGCTTCTACGCTGTGTGCTTGGCATTTTCTTTAGTGTTTAATTTATTACTGAGCTTCAGACTCTATGTGGATGTGGGTGGAAATTGGGAACTGAGTTGGAGCAAAAGAGCAGCAGAAGAAGCTGAGCACGTGGCAACCATCTCTTGCTCAGGGCATGGAAGAGCCTACTTAGATGGCCTAATTCTTGACGGGAAGGAACCTGTTTGTGAGTGCAATTCCTGCTATGGAGGCCCTGACTGCTCTTTGTTTTTAACTGGATGTGCAGCAAACGCTGACAGTGGGGACCCATATTTCTTGGAGCCTTTTTGGACGAAACATGCATCAAAAAGTGCAGTTTTAGTAGCAGGATGGCATCGAATGAGCTATGTCTTCCCTGATCAATCTCGCGTCTCAGCAGAGCTTGAGAGGCACATCCGCGAAATTCATACCATTGTCGGAAATGCGGTCACTGAAGGGAGATACATTGTTTTTGGTGCTGGCTCAACCCAACTTCTCAATGCTGCAGTTAACGCGCTGTCGACTTCCAATAACTTCAACTCTTCACCTTCAAGTGTTGTAGCTTCAATTCCTTATTACAGTCTTTACCAAATGCAAACGGAGTTTTTCCGATCAATGGACTATATGTTTCAAGGAGATGCTGCCTTGCTGCAGAACACTTCGGATGCTACTAAAAATGTTGTTGAGTTTGTAACCTCACCAAACAATCCAGATGGGCAGCTGAAGAAGGCAATTTTTCAAGGCCCGAATGCTAAAGCAATCTATGATCGATTGTATACTACTGGCCACATTTTACAGCAATTCCTGCTCCAGCGGATGACGATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alliinase_C EGF_alliinase

Protein Analysis

281

Amino Acids

30.86

Weight (kDa)

5.79

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34040 AT1G34040 AT1G34060 AT1G34060
fragaria_vesca	FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010 FvH4_2g13010
malus_domestica	MD05G1033800.v1.1 MD10G1035100.v1.1 MD10G1035600.v1.1 MD10G1035700.v1.1 MD10G1035800.v1.1
prunus_persica	Prupe.8G041100_v2.0.a1 Prupe.8G041200_v2.0.a1 Prupe.8G041300_v2.0.a1 Prupe.8G041600_v2.0.a1 Prupe.8G041600_v2.0.a1
pyrus_communis	pycom05g02440 pycom10g02410 pycom10g02420
rosa_chinensis	RchiOBHm_Chr6g0274171 RchiOBHm_Chr6g0274191
rosa_laevigata	RLG00000013573 RLG00000013574 RLG00000013575
rosa_multiflora	Rmu_co8325345.1_g000001 Rmu_co8467135.1_g000001 Rmu_sc0001939.1_g000013 Rmu_sc0001939.1_g000014 Rmu_sc0001939.1_g000015
rosa_roxburghii	Rroxscaffold_7G00194440 Rroxscaffold_7G00194490
rosa_rugosa	Rorug06G0079700
rosa_samantha	Rh6AG194800 Rh6AG194900 Rh6BG199000 Rh6BG199200 Rh6CG199400 Rh6DG190700 Rh6DG190900
rosa_wichuraiana	Rw6G017030 Rw6G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	533, 788
AccII	CGCG	3 cut(s)	402, 432, 527
AciI	CCGC	3 cut(s)	430, 458, 826
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	3 cut(s)	55, 486, 755
AcvI	CACGTG	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	550, 564, 579, 644, 752
AluBI	AGCT	7 cut(s)	18, 69, 137, 378, 415, 575, 733
AluI	AGCT	7 cut(s)	18, 69, 137, 378, 415, 575, 733
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	409
AoxI	GGCC	4 cut(s)	190, 244, 754, 796
ApeKI	GCWGC	6 cut(s)	125, 278, 515, 653, 661, 730
ApoI	RAATTY	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	3 cut(s)	245, 298, 755
AsuHPI	GGTGA	2 cut(s)	549, 702
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	798
BbrPI	CACGTG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	6 cut(s)	137, 290, 502, 640, 648, 742
BccI	CCATC	4 cut(s)	161, 182, 357, 719
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	2 cut(s)	516, 662
BisI	GCNGC	6 cut(s)	126, 279, 516, 654, 662, 731
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	6 cut(s)	127, 280, 517, 655, 663, 732
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	245, 298, 755
BmiI	GGNNCC	4 cut(s)	213, 299, 300, 315
BmsI	GCATC	4 cut(s)	344, 376, 640, 667
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	781
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	274, 799
Bse8I	GATNNNNATC	1 cut(s)	833
BseCI	ATCGAT	1 cut(s)	781
BseGI	GGATG	6 cut(s)	91, 278, 368, 426, 682, 834
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	5 cut(s)	56, 98, 129, 177, 420
BseNI	ACTGG	2 cut(s)	274, 799
BseXI	GCAGC	6 cut(s)	137, 290, 502, 640, 648, 742
BsgI	GTGCAG	2 cut(s)	297, 366
Bsh1236I	CGCG	3 cut(s)	402, 432, 527
BshFI	GGCC	4 cut(s)	192, 246, 756, 798
BshVI	ATCGAT	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	192, 246, 756, 798
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	391, 623, 778, 834
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	430, 458, 826
BspANI	GGCC	4 cut(s)	192, 246, 756, 798
BspCNI	CTCAG	5 cut(s)	57, 99, 130, 176, 419
BspDI	ATCGAT	1 cut(s)	781
BspFNI	CGCG	3 cut(s)	402, 432, 527
BspHI	TCATGA	1 cut(s)	839
BspLI	GGNNCC	4 cut(s)	213, 299, 300, 315
BspMAI	CTGCAG	2 cut(s)	520, 666
BspQI	GCTCTTC	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	274, 799
BssMI	GATC	4 cut(s)	391, 623, 778, 834
BssNAI	GTATAC	1 cut(s)	789
Bst1107I	GTATAC	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	293, 593
Bst6I	CTCTTC	2 cut(s)	169, 559
BstAPI	GCANNNNNTGC	2 cut(s)	234, 817
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	6 cut(s)	65, 107, 138, 163, 184, 406
BstF5I	GGATG	6 cut(s)	91, 278, 368, 426, 682, 834
BstFNI	CGCG	3 cut(s)	402, 432, 527
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	4 cut(s)	394, 626, 781, 837
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	4 cut(s)	391, 623, 778, 834
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 234, 243, 252, 284, 421, 524, 817
BstNSI	RCATGY	1 cut(s)	335
BstSFI	CTRYAG	2 cut(s)	516, 662
BstUI	CGCG	3 cut(s)	402, 432, 527
BstV1I	GCAGC	6 cut(s)	137, 290, 502, 640, 648, 742
BstV2I	GAAGAC	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	789
Bsu15I	ATCGAT	1 cut(s)	781
BsuRI	GGCC	4 cut(s)	192, 246, 756, 798
BsuTUI	ATCGAT	1 cut(s)	781
BtsCI	GGATG	6 cut(s)	91, 278, 368, 426, 682, 834
BtsIMutI	CAGTG	2 cut(s)	298, 462
Cac8I	GCNNGC	1 cut(s)	493
CciI	TCATGA	1 cut(s)	839
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	245, 298, 755
ClaI	ATCGAT	1 cut(s)	781
CseI	GACGC	1 cut(s)	391
CviAII	CATG	3 cut(s)	170, 332, 840
DdeI	CTNAG	6 cut(s)	65, 107, 138, 163, 184, 406
DpnI	GATC	4 cut(s)	393, 625, 780, 836
DpnII	GATC	4 cut(s)	391, 623, 778, 834
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	169, 559
EarI	CTCTTC	2 cut(s)	169, 559
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	3 cut(s)	55, 486, 755
Eco72I	CACGTG	1 cut(s)	145
EcoO109I	RGGNCCY	2 cut(s)	245, 298
EcoT22I	ATGCAT	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	3 cut(s)	173, 335, 843
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	3 cut(s)	169, 331, 839
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	533, 788
Fnu4HI	GCNGC	6 cut(s)	126, 279, 516, 654, 662, 731
FokI	GGATG	5 cut(s)	98, 285, 375, 413, 689
Fsp4HI	GCNGC	6 cut(s)	126, 279, 516, 654, 662, 731
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	6 cut(s)	126, 279, 516, 654, 662, 731
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	4 cut(s)	192, 246, 756, 798
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	173, 335, 843
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	2 cut(s)	523, 534
HindII	GTYRAC	2 cut(s)	523, 534
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	1 cut(s)	75
HpaI	GTTAAC	1 cut(s)	523
HphI	GGTGA	2 cut(s)	549, 702
Hpy166II	GTNNAC	3 cut(s)	523, 534, 789
Hpy188I	TCNGA	4 cut(s)	74, 452, 623, 676
Hpy188III	TCNNGA	3 cut(s)	200, 722, 840
Hpy8I	GTNNAC	3 cut(s)	523, 534, 789
HpyAV	CCTTC	4 cut(s)	202, 461, 570, 733
HpyCH4III	ACNGT	2 cut(s)	293, 593
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	7 cut(s)	228, 278, 335, 347, 518, 607, 664
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 234, 243, 252, 284, 421, 524, 817
HpyF3I	CTNAG	6 cut(s)	65, 107, 138, 163, 184, 406
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	173, 335, 843
HspAI	GCGC	1 cut(s)	527
KflI	GGGWCCC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	391, 623, 778, 834
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	114, 313, 825
Lsp1109I	GCAGC	6 cut(s)	137, 290, 502, 640, 648, 742
LweI	GCATC	4 cut(s)	344, 376, 640, 667
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	460, 703
MalI	GATC	4 cut(s)	393, 625, 780, 836
MboI	GATC	4 cut(s)	391, 623, 778, 834
MboII	GAAGA	5 cut(s)	143, 186, 376, 546, 748
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	8 cut(s)	55, 97, 195, 229, 435, 579, 744, 812
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	92, 430
MnlI	CCTC	3 cut(s)	236, 414, 718
Mox20I	TGGCCA	1 cut(s)	798
Mph1103I	ATGCAT	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	3 cut(s)	54, 266, 522
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	2 cut(s)	733, 826
Mva1269I	GAATGC	1 cut(s)	766
MvnI	CGCG	3 cut(s)	402, 432, 527
MwoI	GCNNNNNNNGC	8 cut(s)	134, 234, 243, 252, 284, 421, 524, 817
NdeII	GATC	4 cut(s)	391, 623, 778, 834
NlaIII	CATG	3 cut(s)	173, 335, 843
NlaIV	GGNNCC	4 cut(s)	213, 299, 300, 315
NmuCI	GTSAC	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	335
PagI	TCATGA	1 cut(s)	839
PciSI	GCTCTTC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	766
PkrI	GCNGC	6 cut(s)	127, 280, 517, 655, 663, 732
PleI	GAGTC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspCI	CACGTG	1 cut(s)	145
PspN4I	GGNNCC	4 cut(s)	213, 299, 300, 315
PspPI	GGNCC	3 cut(s)	245, 298, 755
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	2 cut(s)	520, 666
PvuII	CAGCTG	1 cut(s)	733
SalI	GTCGAC	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	54, 266, 522
SatI	GCNGC	6 cut(s)	126, 279, 516, 654, 662, 731
Sau3AI	GATC	4 cut(s)	391, 623, 778, 834
Sau96I	GGNCC	3 cut(s)	245, 298, 755
SchI	GAGTC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	4 cut(s)	344, 376, 640, 667
SfcI	CTRYAG	2 cut(s)	516, 662
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	8 cut(s)	55, 97, 195, 229, 435, 579, 744, 812
SsiI	CCGC	3 cut(s)	430, 458, 826
TaaI	ACNGT	2 cut(s)	293, 593
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	370, 533, 781
TasI	AATT	8 cut(s)	55, 97, 195, 229, 435, 579, 744, 812
Tru1I	TTAA	3 cut(s)	54, 266, 522
Tru9I	TTAA	3 cut(s)	54, 266, 522
TscAI	CASTG	2 cut(s)	298, 469
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	6 cut(s)	125, 278, 515, 653, 661, 730
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	298, 469
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	435
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	533, 788
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.