AT1G37000

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005302
Physical Location & Seq
Forward (+)
14036038 .. 14037145
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G37000.1

Sequence Viewer

Length: 660 bp
ATGGCAAGAGGTCTCCCTCTTGGTCCGTCAGTTGCGTCATGGCCGATGGAGACGTCGACGGCGCACGACATTTTTCTTCTTTGGGCAATGGGCTTCGCCGCTTTTGCTGCCATCGGAGACACGATCTTCACAACAACCATCTCAGTCTTCTCTGGCCCTTGTTTAAATCTCTACGCTACGACAATATTATTGAATGTCTTCAACTCTTGCCCAAGTATCATCATCTCCAAGAACCGGATCATGTGCTCTCAAGACATTTACTATCTTCATAGAAGTGATCCCAAACCCCTGCTTTATGTCGTAAAGCAAACTCCTTCAAGCTACAAATCCATAGCTGCCCGAACCCGCGCTGCTGTACTACTTCGTGTAGTCCTTCTCAAGACGAGAAGTCTAGCCATGGTTCACTTATCAACGTTACATAGTCTTATGACTGTGACTATCTTGTCATCCATTGATTCGTTCATGGAAGATCCTTCGTCAAACCGTGACCTCACATGTGTCAAATCACCTTCAAGCATTTGTCTCAAAGCTCTCATGGAACCTTTGTCGATTTCTACTATTTATCTGTTTGTGGCATTGGGGAATGTCCTTCTTGTTTATGTTCTAAACTCTGAATCTTTTGATCTCAGTTTTCTTTGTATTTGGTTCTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142
Pfam Domains
Protein Families
BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

219

Amino Acids

24.18

Weight (kDa)

8.22

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AatII GACGTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 56
AccII CGCG 1 cut(s) 348
AciI CCGC 2 cut(s) 99, 346
AclI AACGTT 1 cut(s) 413
AclWI GGATC 3 cut(s) 245, 272, 464
AcoI YGGCCR 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 4 cut(s) 193, 202, 318, 513
AhdI GACNNNNNGTC 1 cut(s) 387
AluBI AGCT 3 cut(s) 321, 335, 530
AluI AGCT 3 cut(s) 321, 335, 530
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 4 cut(s) 17, 44, 111, 527
AlwI GGATC 3 cut(s) 245, 272, 464
AoxI GGCC 2 cut(s) 41, 154
ApeKI GCWGC 3 cut(s) 107, 335, 350
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 64, 350
AspS9I GGNCC 2 cut(s) 23, 155
AsuHPI GGTGA 1 cut(s) 498
AvaII GGWCC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 139, 190
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 3 cut(s) 94, 322, 337
BccI CCATC 3 cut(s) 40, 119, 146
BceAI ACGGC 1 cut(s) 75
BcoDI GTCTC 4 cut(s) 17, 44, 111, 527
BfaI CTAG 1 cut(s) 392
BisI GCNGC 4 cut(s) 99, 108, 336, 351
BlsI GCNGC 4 cut(s) 100, 109, 337, 352
Bme18I GGWCC 1 cut(s) 23
BmeRI GACNNNNNGTC 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 23, 155
BmiI GGNNCC 1 cut(s) 540
BpiI GAAGAC 2 cut(s) 139, 190
BpuEI CTTGAG 2 cut(s) 234, 362
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 156, 640
BseXI GCAGC 3 cut(s) 94, 322, 337
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 43, 156
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 4 cut(s) 17, 44, 111, 527
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 2 cut(s) 43, 156
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 5 cut(s) 123, 237, 277, 469, 622
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 99, 346
BspANI GGCC 2 cut(s) 43, 156
BspCNI CTCAG 2 cut(s) 155, 639
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 540
BspPI GGATC 3 cut(s) 245, 272, 464
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 5 cut(s) 123, 237, 277, 469, 622
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 433, 485
BstACI GRCGYC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 142, 626
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 2 cut(s) 64, 350
BstKTI GATC 5 cut(s) 126, 240, 280, 472, 625
BstMAI GTCTC 4 cut(s) 17, 44, 111, 527
BstMBI GATC 5 cut(s) 123, 237, 277, 469, 622
BstMWI GCNNNNNNNGC 2 cut(s) 104, 107
BstNSI RCATGY 1 cut(s) 498
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 94, 322, 337
BstV2I GAAGAC 2 cut(s) 139, 190
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 2 cut(s) 43, 156
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 446
CfoI GCGC 2 cut(s) 64, 350
Cfr13I GGNCC 2 cut(s) 23, 155
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 356
CviAII CATG 6 cut(s) 39, 241, 397, 463, 495, 535
CviJI RGCY 7 cut(s) 43, 93, 156, 321, 335, 395, 530
CviKI_1 RGCY 7 cut(s) 43, 93, 156, 321, 335, 395, 530
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 142, 626
DpnI GATC 5 cut(s) 125, 239, 279, 471, 624
DpnII GATC 5 cut(s) 123, 237, 277, 469, 622
DraI TTTAAA 1 cut(s) 165
DrdI GACNNNNNNGTC 1 cut(s) 442
DriI GACNNNNNGTC 1 cut(s) 387
DseDI GACNNNNNNGTC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 6 cut(s) 42, 244, 400, 466, 498, 538
FatI CATG 6 cut(s) 38, 240, 396, 462, 494, 534
FauI CCCGC 1 cut(s) 353
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 4 cut(s) 99, 108, 336, 351
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 99, 108, 336, 351
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 63, 349
GluI GCNGC 4 cut(s) 99, 108, 336, 351
HaeIII GGCC 2 cut(s) 43, 156
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 64, 350
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 6 cut(s) 42, 244, 400, 466, 498, 538
Hin6I GCGC 2 cut(s) 62, 348
HinP1I GCGC 2 cut(s) 62, 348
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 455, 614
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 498
Hpy166II GTNNAC 2 cut(s) 57, 403
Hpy188I TCNGA 2 cut(s) 116, 613
Hpy188III TCNNGA 3 cut(s) 251, 379, 653
Hpy8I GTNNAC 2 cut(s) 57, 403
Hpy99I CGWCG 2 cut(s) 58, 61
HpyAV CCTTC 5 cut(s) 324, 383, 483, 519, 599
HpyCH4III ACNGT 2 cut(s) 433, 485
HpyCH4IV ACGT 2 cut(s) 53, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 107
HpyF3I CTNAG 2 cut(s) 142, 626
HpySE526I ACGT 2 cut(s) 53, 413
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 6 cut(s) 42, 244, 400, 466, 498, 538
HspAI GCGC 2 cut(s) 62, 348
Kzo9I GATC 5 cut(s) 123, 237, 277, 469, 622
LpnPI CCDG 3 cut(s) 138, 248, 302
Lsp1109I GCAGC 3 cut(s) 94, 322, 337
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 53, 413
MaeIII GTNAC 3 cut(s) 414, 433, 485
MalI GATC 5 cut(s) 125, 239, 279, 471, 624
MboI GATC 5 cut(s) 123, 237, 277, 469, 622
MboII GAAGA 6 cut(s) 68, 118, 139, 190, 257, 479
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 248
MnlI CCTC 2 cut(s) 27, 500
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 104, 107
NcoI CCATGG 1 cut(s) 396
NdeII GATC 5 cut(s) 123, 237, 277, 469, 622
NlaIII CATG 6 cut(s) 42, 244, 400, 466, 498, 538
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 2 cut(s) 433, 485
NspI RCATGY 1 cut(s) 498
PciI ACATGT 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 455, 614
PkrI GCNGC 4 cut(s) 100, 109, 337, 352
PscI ACATGT 1 cut(s) 494
Psp1406I AACGTT 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 2 cut(s) 23, 155
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 273
SalI GTCGAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 99, 108, 336, 351
Sau3AI GATC 5 cut(s) 123, 237, 277, 469, 622
Sau96I GGNCC 2 cut(s) 23, 155
SduI GDGCHC 1 cut(s) 248
SetI ASST 9 cut(s) 13, 56, 323, 337, 416, 492, 511, 532, 544
SgrDI CGTCGACG 1 cut(s) 55
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 249, 377
SmoI CTYRAG 2 cut(s) 249, 377
SsiI CCGC 2 cut(s) 99, 346
SspI AATATT 1 cut(s) 186
SspMI CTAG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 433, 485
TaiI ACGT 2 cut(s) 56, 416
TaqI TCGA 2 cut(s) 56, 548
TatI WGTACW 1 cut(s) 355
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 455, 614
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 2 cut(s) 433, 485
TseI GCWGC 3 cut(s) 107, 335, 350
Tsp45I GTSAC 2 cut(s) 433, 485
TspDTI ATGAA 2 cut(s) 257, 451
TspGWI ACGGA 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 392
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.