AT2G15025
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005302
Physical Location & Seq
Reverse (-)
6501126 .. 6501704
579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15025.1

Sequence Viewer

Length: 558 bp
ATGATTTTCTCTCTACGTGGAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCATTTCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCATGAAATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTGCTCCATGGAGCGGTGCTTACCAAAGCTTCCTTAACTCCTTACCTTCAAACCCGCCCAACAACACTTTAACCTCTCTCCTTGTCGATGAGCAAACCCAGCTCGCTCTCGTGCCGGCGAGAACCTCGACTATGGAATCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACGTTCCGTATGTAGATGACTTTTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATAGCTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTTCTTTCTTTATGTAGCATTTGCTTCAACCTTTGTCTGTTGTTGCTATTTCGCTTTAAGCCTTGTTATCTTTGTATCCTTAACTACTTGTAACCTTGTTTTTATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

185

Amino Acids

20.71

Weight (kDa)

4.73

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 3 cut(s) 62, 168, 209
AclI AACGTT 1 cut(s) 342
AclWI GGATC 2 cut(s) 422, 435
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 43, 204, 300, 474
AluBI AGCT 3 cut(s) 183, 256, 405
AluI AGCT 3 cut(s) 183, 256, 405
AlwI GGATC 2 cut(s) 422, 435
AoxI GGCC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 34
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 263
BciVI GTATCC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 532
BmiI GGNNCC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BsaAI YACGTR 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 161, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 161, 321
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 427
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 3 cut(s) 62, 168, 209
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 422, 435
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 161, 321
BssMI GATC 1 cut(s) 427
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 322, 374
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 258, 270
BstDEI CTNAG 2 cut(s) 78, 308
BstDSI CCRYGG 2 cut(s) 161, 321
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 1 cut(s) 326
BtgI CCRYGG 2 cut(s) 161, 321
Cac8I GCNNGC 2 cut(s) 258, 270
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 268
CviAII CATG 4 cut(s) 83, 116, 162, 424
CviJI RGCY 6 cut(s) 183, 256, 326, 405, 411, 507
CviKI_1 RGCY 6 cut(s) 183, 256, 326, 405, 411, 507
DdeI CTNAG 2 cut(s) 78, 308
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 86, 119, 165, 427
FatI CATG 4 cut(s) 82, 115, 161, 423
FauI CCCGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 269
Hin1II CATG 4 cut(s) 86, 119, 165, 427
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 3 cut(s) 74, 151, 290
HpaII CCGG 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 322, 374
HpyCH4IV ACGT 3 cut(s) 16, 302, 342
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 78, 308
HpySE526I ACGT 3 cut(s) 16, 302, 342
Hsp92II CATG 4 cut(s) 86, 119, 165, 427
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 2 cut(s) 163, 165
LpnPI CCDG 3 cut(s) 168, 266, 282
MaeII ACGT 3 cut(s) 16, 302, 342
MaeIII GTNAC 4 cut(s) 87, 303, 376, 536
MalI GATC 1 cut(s) 429
MbiI CCGCTC 1 cut(s) 168
MboI GATC 1 cut(s) 427
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 3 cut(s) 34, 144, 391
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 3 cut(s) 126, 238, 289
Mox20I TGGCCA 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 326
MseI TTAA 5 cut(s) 102, 189, 224, 503, 527
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 253
NaeI GCCGGC 1 cut(s) 270
NcoI CCATGG 1 cut(s) 161
NdeII GATC 1 cut(s) 427
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 4 cut(s) 86, 119, 165, 427
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 303
NspI RCATGY 1 cut(s) 86
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 74, 290
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 1 cut(s) 427
SaqAI TTAA 5 cut(s) 102, 189, 224, 503, 527
Sau3AI GATC 1 cut(s) 427
SchI GAGTC 1 cut(s) 160
Sse9I AATT 3 cut(s) 34, 144, 391
SsiI CCGC 3 cut(s) 62, 168, 209
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 322, 374
TaiI ACGT 3 cut(s) 19, 305, 345
TaqI TCGA 4 cut(s) 240, 281, 365, 437
TasI AATT 3 cut(s) 34, 144, 391
TfiI GAWTC 2 cut(s) 74, 290
Tru1I TTAA 5 cut(s) 102, 189, 224, 503, 527
Tru9I TTAA 5 cut(s) 102, 189, 224, 503, 527
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 2 cut(s) 104, 132
TspGWI ACGGA 1 cut(s) 336
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.