AT2G04378
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005302
Physical Location & Seq
Reverse (-)
1525029 .. 1526875
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04378.1

Sequence Viewer

Length: 432 bp
ATGCAGAAGCCCAGGTCTGGTCCAAACCTTTTCTTGCTCTCCCTTAGTATAATTTTGAGCCGATTCATGTTATCTTTTGATTGTGGACGTCAATTAGAGCATACTCTCTCATTTTTGCTATGTTGGTGCAAGATTTACTTGAGAACCCTGCCACTAGAAACACCTAGGTCCTTCTTCCATGGTTGTAAGAGTTTGAAAAAGAGCGGCATTATGATCCCGCCTCCACGGAGCGGTGATTACCGTAATTTCTTCAAGTTGTCATCTATGCTGCATCTATTTATTGAATCCATTCAGTCACTATTGCTTCTTAGCATCGCCAGAGATCTCCCTATTGTTTTTACAAGAGTAAAGAAGATGGGCATTATGATCCCGTTATTAACGAGCGGTGATTACCCAAGTTTCTCCAAACTCTTTTCTCCGAACCCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

143

Amino Acids

16.39

Weight (kDa)

10.04

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccBSI CCGCTC 3 cut(s) 204, 231, 384
AciI CCGC 4 cut(s) 204, 218, 231, 384
AclWI GGATC 2 cut(s) 208, 361
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 17, 230
AgsI TTSAA 3 cut(s) 196, 253, 284
AjnI CCWGG 1 cut(s) 11
AlwI GGATC 2 cut(s) 208, 361
ApeKI GCWGC 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 288
AspA2I CCTAGG 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 20, 168
AsuHPI GGTGA 2 cut(s) 245, 398
AvaII GGWCC 2 cut(s) 20, 168
AvrII CCTAGG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 13
BfaI CTAG 2 cut(s) 155, 165
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 205, 269
BlnI CCTAGG 1 cut(s) 164
BlsI GCNGC 2 cut(s) 206, 270
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 2 cut(s) 20, 168
BmgT120I GGNCC 2 cut(s) 20, 168
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 280, 321
BpuEI CTTGAG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 4 cut(s) 11, 164, 178, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 230
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 4 cut(s) 11, 164, 178, 224
BseLI CCNNNNNNNGG 2 cut(s) 17, 230
BseXI GCAGC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 17, 230
Bsp143I GATC 3 cut(s) 213, 322, 366
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 4 cut(s) 204, 218, 231, 384
BspPI GGATC 2 cut(s) 208, 361
BsrBI CCGCTC 3 cut(s) 204, 231, 384
BssECI CCNNGG 4 cut(s) 11, 164, 178, 224
BssMI GATC 3 cut(s) 213, 322, 366
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 164, 178
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 242, 429
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 44, 308
BstDSI CCRYGG 2 cut(s) 178, 224
BstKTI GATC 3 cut(s) 216, 325, 369
BstMBI GATC 3 cut(s) 213, 322, 366
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtgI CCRYGG 2 cut(s) 178, 224
BtgZI GCGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 20, 168
CviAII CATG 2 cut(s) 67, 179
CviJI RGCY 2 cut(s) 10, 60
CviKI_1 RGCY 2 cut(s) 10, 60
DdeI CTNAG 2 cut(s) 44, 308
DpnI GATC 3 cut(s) 215, 324, 368
DpnII GATC 3 cut(s) 213, 322, 366
Eco130I CCWWGG 2 cut(s) 164, 178
Eco47I GGWCC 2 cut(s) 20, 168
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 164, 178
ErhI CCWWGG 2 cut(s) 164, 178
FaeI CATG 2 cut(s) 70, 182
FaiI YATR 8 cut(s) 50, 68, 102, 121, 180, 212, 266, 365
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 2 cut(s) 66, 178
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 205, 269
Fsp4HI GCNGC 2 cut(s) 205, 269
FspBI CTAG 2 cut(s) 155, 165
GluI GCNGC 2 cut(s) 205, 269
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 2 cut(s) 70, 182
HinfI GANTC 2 cut(s) 63, 284
HphI GGTGA 2 cut(s) 245, 398
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 420
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 242, 429
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 4, 129, 271
HpyF3I CTNAG 2 cut(s) 44, 308
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 2 cut(s) 70, 182
Kzo9I GATC 3 cut(s) 213, 322, 366
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 3, 25, 161, 331
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 2 cut(s) 280, 321
MaeI CTAG 2 cut(s) 155, 165
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 294
MalI GATC 3 cut(s) 215, 324, 368
MbiI CCGCTC 3 cut(s) 204, 231, 384
MboI GATC 3 cut(s) 213, 322, 366
MboII GAAGA 3 cut(s) 166, 241, 364
MflI RGATCY 1 cut(s) 322
MluCI AATT 3 cut(s) 51, 92, 244
MnlI CCTC 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 178
NdeII GATC 3 cut(s) 213, 322, 366
NlaIII CATG 2 cut(s) 70, 182
NmuCI GTSAC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 63, 284
PkrI GCNGC 2 cut(s) 206, 270
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspPI GGNCC 2 cut(s) 20, 168
PspPPI RGGWCCY 1 cut(s) 168
PsuI RGATCY 1 cut(s) 322
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 205, 269
Sau3AI GATC 3 cut(s) 213, 322, 366
Sau96I GGNCC 2 cut(s) 20, 168
ScrFI CCNGG 1 cut(s) 13
SetI ASST 5 cut(s) 17, 30, 91, 166, 170
SfaNI GCATC 2 cut(s) 280, 321
SinI GGWCC 2 cut(s) 20, 168
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 3 cut(s) 51, 92, 244
SsiI CCGC 4 cut(s) 204, 218, 231, 384
SspMI CTAG 2 cut(s) 155, 165
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 2 cut(s) 164, 178
TaaI ACNGT 2 cut(s) 242, 429
TaiI ACGT 1 cut(s) 91
TasI AATT 3 cut(s) 51, 92, 244
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 63, 284
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 20, 168
XmaJI CCTAGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 155, 165
ZraI GACGTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.