AT3G44070

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005302
Physical Location & Seq
Reverse (-)
15828153 .. 15829823
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44070.1

Sequence Viewer

Length: 831 bp
ATGAATTTGTCGAGGAATAACGACATTATGATCCCGGCTCCAAGGAGCGGTGATTACCGTAACTTCCTCGACCTCTTATCTCCATATCCCTTGTTTACTGAACTCATTCATGTGCCATCTATCATCTTTAGTGATACCTTTAACACTCTCAAAACTTTGAAGCCCATGTCCTTTTATCATCTCTCTGGGTTAAACCGAAGACAAACTTTGTATGGATTTCTTAATCTCCATGGCCGAGAACTCCATGTGGGAGAGAACCCACCTGTTTTGTTACGCTTTATTACCCGACATTTACGAATCCTTGTTTTTGCTTCCTCTAATGGTTTGAGCTTGCCAAATGACTACCTTTCATCAAGCTCTCTAGAAGACTTTAAGCCATTCACCCTCTACACTACTTCCATTCGCTATGGCTTGCCCAAGCTCCAGTCTCATCTTACGGCAGCTCTACCTCTCAACCTCACGCATCGGAGTACCGTCTTTGCTCGAGCCCTTGTCAAAGCACTACCTCGTGTAGTTTGTTTGGTGCCGCCGAGTTTCACGTCTTTGACCCTTACACCAACGCCACTTCGTCTCTTGACAATGACGAATTGTTCTTCCTTTGATTTGCTCTTGGAAGATTTGTCGATTTCTTTTGATCTCACTTGCACCAACAAATTACCTAGCTTTTGGTTCAAAGCCCTCAAGGATTTGATATCGATTAACCCTATCTATCCCTTTATGTTTCTTATGTTATCTTATCTTATGTTTTCTTTGGGGTATGCCCTTTATTGTGATGTTCTAAACTTTGGGAATTCATTTCCCCTCCATCTTTGTATTTGGTTTCCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142
Pfam Domains
Protein Families
BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

276

Amino Acids

31.56

Weight (kDa)

9.11

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 2 cut(s) 48, 527
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 2 cut(s) 4, 790
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 160, 673
AjiI CACGTC 1 cut(s) 540
AluBI AGCT 5 cut(s) 330, 357, 421, 443, 663
AluI AGCT 5 cut(s) 330, 357, 421, 443, 663
Alw26I GTCTC 2 cut(s) 432, 575
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 2 cut(s) 4, 790
Asp700I GAANNNNTTC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 62, 373
AvaI CYCGRG 1 cut(s) 483
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 490
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 205, 372
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 124, 813
BceAI ACGGC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 432, 575
BfaI CTAG 2 cut(s) 362, 660
BisI GCNGC 2 cut(s) 441, 527
BlsI GCNGC 2 cut(s) 442, 528
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 483
BmgBI CACGTC 1 cut(s) 540
BmiI GGNNCC 2 cut(s) 39, 525
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 2 cut(s) 205, 372
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 695
BsaJI CCNNGG 3 cut(s) 41, 229, 824
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 424
BseCI ATCGAT 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 41, 229, 824
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 695
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 432, 575
BsmBI CGTCTC 1 cut(s) 575
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 2 cut(s) 30, 634
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 48, 527
BspANI GGCC 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 695
BspLI GGNNCC 2 cut(s) 39, 525
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 523
BsrBI CCGCTC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 41, 229, 824
BssMI GATC 2 cut(s) 30, 634
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 3 cut(s) 41, 229, 824
Bst2BI CACGAG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 59, 475
BstC8I GCNNGC 2 cut(s) 332, 413
BstDSI CCRYGG 1 cut(s) 229
BstKTI GATC 2 cut(s) 33, 637
BstMAI GTCTC 2 cut(s) 432, 575
BstMBI GATC 2 cut(s) 30, 634
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 205, 372
Bsu15I ATCGAT 1 cut(s) 695
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 695
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 332, 413
ClaI ATCGAT 1 cut(s) 695
Csp6I GTAC 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 4 cut(s) 110, 166, 230, 245
CviQI GTAC 1 cut(s) 471
DpnI GATC 2 cut(s) 32, 636
DpnII GATC 2 cut(s) 30, 634
EaeI YGGCCR 1 cut(s) 232
Eco130I CCWWGG 3 cut(s) 41, 229, 824
Eco24I GRGCYC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 790
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 3 cut(s) 41, 229, 824
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 3 cut(s) 41, 229, 824
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 4 cut(s) 113, 169, 233, 248
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 4 cut(s) 109, 165, 229, 244
Fnu4HI GCNGC 2 cut(s) 441, 527
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 441, 527
FspBI CTAG 2 cut(s) 362, 660
GluI GCNGC 2 cut(s) 441, 527
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 35
Hin1II CATG 4 cut(s) 113, 169, 233, 248
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 62, 373
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 2 cut(s) 362, 574
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 59, 475
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 4 cut(s) 113, 169, 233, 248
Kzo9I GATC 2 cut(s) 30, 634
LmnI GCTCC 3 cut(s) 43, 45, 426
LpnPI CCDG 4 cut(s) 48, 171, 276, 437
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 362, 660
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 2 cut(s) 59, 270
MalI GATC 2 cut(s) 32, 636
MbiI CCGCTC 1 cut(s) 48
MboI GATC 2 cut(s) 30, 634
MboII GAAGA 4 cut(s) 210, 377, 585, 626
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 4 cut(s) 4, 586, 653, 790
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 5 cut(s) 141, 191, 222, 372, 699
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 229
NdeII GATC 2 cut(s) 30, 634
NlaIII CATG 4 cut(s) 113, 169, 233, 248
NlaIV GGNNCC 2 cut(s) 39, 525
NmeAIII GCCGAG 2 cut(s) 260, 555
PaeR7I CTCGAG 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 442, 528
PspN4I GGNNCC 2 cut(s) 39, 525
PspXI VCTCGAGB 1 cut(s) 483
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 5 cut(s) 141, 191, 222, 372, 699
SatI GCNGC 2 cut(s) 441, 527
Sau3AI GATC 2 cut(s) 30, 634
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 483
SlaI CTCGAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 483, 680
SmoI CTYRAG 2 cut(s) 483, 680
Sse9I AATT 4 cut(s) 4, 586, 653, 790
SsiI CCGC 2 cut(s) 48, 527
SspMI CTAG 2 cut(s) 362, 660
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 3 cut(s) 41, 229, 824
TaaI ACNGT 2 cut(s) 59, 475
TaiI ACGT 1 cut(s) 542
TaqI TCGA 5 cut(s) 11, 69, 484, 623, 695
TasI AATT 4 cut(s) 4, 586, 653, 790
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 5 cut(s) 141, 191, 222, 372, 699
Tru9I TTAA 5 cut(s) 141, 191, 222, 372, 699
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 17, 98, 339, 783
XapI RAATTY 2 cut(s) 4, 790
XbaI TCTAGA 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 362, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.