AT3G44265
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005302
Physical Location & Seq
Reverse (-)
15955138 .. 15956246
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44265.1

Sequence Viewer

Length: 1092 bp
TCCCTCGCTTTCCCTGAAACCTTTCTCCACCGTGTCTCGTCGCCTTTAGTTACCTCTTCACCTCCCCCTGCATTTCAACCAAATCCCTCATGTCTCGTCTTTGAGCTTTCGGGATTCTTACTGTTGGGGAGCCTCCGGCCAACGCTCTCTCCGGTGAAGGTAGCTAGGGTGAGCGGCGGCGATGACCTAATTACTTTGGTTGCCTCACGTTCTGACCTAATTTTCTCCCAGGTGGGCTTAGGCCCATTCTCCTTACCTTTGAGGCCCATTTGCAGAATAGGTGTTCCAAAACGTCTTCTTCAGAAGCCCAGGTCTGACCCAAACTTTCTCTTGCTCTCCTTTAATATAATTTTGAGTAGATTCATGTCATCTATTGATTGTGGACGTCAATTAGAGCATACTCTCTCATTATTGCTATGTTGGTTCAAGATTTACTTGAGAACCCTGCCACTAGAAACACCTATATCCTTCTTCCATGGTTGTAAGAGTTTGGAAAAGAGCGGCATTATGATCTCGCCTCCAAAGAGCGGTGATTACCGCATTCTTTTCAAATTGTCATCTCTGCTGCACCTATCCATTGAATTTATTCAGTCGCTTTTGCTTCTTAGCATCATCAGAGATCTACCTAAGGATTCTACAAGAGTAATGAAGATGGGCATTATGATCCCGTTAATATCGAGCGGTGATTACCCATTCTTCTCCAAACTCTTTTCTCCCAGCCCACTGTGTTTGGAACTCAAGATCATACCCGATTTTATCTGTATCTCTCAGGATATTAACCCTCTTGTCTCAACGCCCTCTATGCGTTTCGCGTCGCCGAACCATGAGGCAAAGGACTTCTTCTCAACGTCACTTTATCTTGGTTTGATAGTGAATATTTCATATTTCCCCGAAGTGTTCGTGGAAGTGTCTTTGACACACTTTGAAGTCGTGTGTGGTATGTGGCTTGTTTGCCTCTGTCTCCGACTCTCATTGGTCTATCTTCTCAAGTTATCTCTCTTTGTTGCTAGCTTATGTTTTTTTAAGATCTTTGTAACCTGTTTCATCTTTGAGAACTTTGTAAACTTGCCCTTATGGGATTTGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

363

Amino Acids

40.82

Weight (kDa)

8.57

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 388
AccBSI CCGCTC 4 cut(s) 174, 501, 528, 681
AccII CGCG 1 cut(s) 812
AciI CCGC 6 cut(s) 174, 177, 501, 528, 538, 681
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 77, 427, 550, 581, 926
AjnI CCWGG 2 cut(s) 228, 308
AluBI AGCT 3 cut(s) 106, 164, 1011
AluI AGCT 3 cut(s) 106, 164, 1011
Alw26I GTCTC 4 cut(s) 40, 98, 793, 965
AlwI GGATC 1 cut(s) 658
AoxI GGCC 3 cut(s) 137, 241, 263
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 1 cut(s) 581
Asp700I GAANNNNTTC 2 cut(s) 21, 585
AspS9I GGNCC 2 cut(s) 242, 264
AsuHPI GGTGA 5 cut(s) 51, 166, 181, 542, 695
AsuNHI GCTAGC 1 cut(s) 1007
AxyI CCTNAGG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 552
BccI CCATC 2 cut(s) 646, 1078
BciT130I CCWGG 2 cut(s) 230, 310
BcoDI GTCTC 4 cut(s) 40, 98, 793, 965
BfaI CTAG 3 cut(s) 165, 452, 1008
BglII AGATCT 2 cut(s) 619, 1026
BisI GCNGC 4 cut(s) 175, 178, 502, 566
BlsI GCNGC 4 cut(s) 176, 179, 503, 567
Bme1390I CCNGG 2 cut(s) 230, 310
BmgT120I GGNCC 2 cut(s) 242, 264
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 230, 310
BmsI GCATC 1 cut(s) 618
BmtI GCTAGC 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 238
BpuEI CTTGAG 3 cut(s) 457, 722, 971
BsaHI GRCGYC 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 228, 308, 475
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse21I CCTNAGG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 230, 310
BseDI CCNNGG 3 cut(s) 228, 308, 475
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 782
BseXI GCAGC 1 cut(s) 552
BseYI CCCAGC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 3 cut(s) 139, 243, 265
BsiSI CCGG 2 cut(s) 136, 152
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 4 cut(s) 40, 98, 793, 965
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 3 cut(s) 139, 243, 265
Bsp143I GATC 5 cut(s) 510, 619, 663, 741, 1026
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 6 cut(s) 174, 177, 501, 528, 538, 681
BspANI GGCC 3 cut(s) 139, 243, 265
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 1 cut(s) 131
BspOI GCTAGC 1 cut(s) 1011
BspPI GGATC 1 cut(s) 658
BsrBI CCGCTC 4 cut(s) 174, 501, 528, 681
BssECI CCNNGG 3 cut(s) 228, 308, 475
BssMI GATC 5 cut(s) 510, 619, 663, 741, 1026
BssNI GRCGYC 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 230, 310
Bst4CI ACNGT 3 cut(s) 32, 123, 726
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 1009
BstDEI CTNAG 4 cut(s) 238, 605, 627, 768
BstDSI CCRYGG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 812
BstKTI GATC 5 cut(s) 513, 622, 666, 744, 1029
BstMAI GTCTC 4 cut(s) 40, 98, 793, 965
BstMBI GATC 5 cut(s) 510, 619, 663, 741, 1026
BstMWI GCNNNNNNNGC 1 cut(s) 802
BstNI CCWGG 2 cut(s) 230, 310
BstSCI CCNGG 2 cut(s) 228, 308
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 619, 1026
BstYI RGATCY 2 cut(s) 619, 1026
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 3 cut(s) 139, 243, 265
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 722
Cac8I GCNNGC 1 cut(s) 1009
Cfr13I GGNCC 2 cut(s) 242, 264
CseI GACGC 1 cut(s) 801
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 4 cut(s) 90, 364, 476, 824
DdeI CTNAG 4 cut(s) 238, 605, 627, 768
DpnI GATC 5 cut(s) 512, 621, 665, 743, 1028
DpnII GATC 5 cut(s) 510, 619, 663, 741, 1026
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 228, 308
EcoT14I CCWWGG 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 4 cut(s) 93, 367, 479, 827
FalI AAGNNNNNCTT 4 cut(s) 419, 451, 824, 856
FatI CATG 4 cut(s) 89, 363, 475, 823
Fnu4HI GCNGC 4 cut(s) 175, 178, 502, 566
Fsp4HI GCNGC 4 cut(s) 175, 178, 502, 566
FspBI CTAG 3 cut(s) 165, 452, 1008
GluI GCNGC 4 cut(s) 175, 178, 502, 566
GsaI CCCAGC 1 cut(s) 720
HaeIII GGCC 3 cut(s) 139, 243, 265
HapII CCGG 2 cut(s) 136, 152
HgaI GACGC 1 cut(s) 801
Hin1I GRCGYC 1 cut(s) 385
Hin1II CATG 4 cut(s) 93, 367, 479, 827
HinfI GANTC 4 cut(s) 114, 360, 632, 966
HpaII CCGG 2 cut(s) 136, 152
HphI GGTGA 5 cut(s) 51, 166, 181, 542, 695
Hpy166II GTNNAC 2 cut(s) 383, 1063
Hpy188I TCNGA 5 cut(s) 214, 303, 316, 617, 965
Hpy188III TCNNGA 4 cut(s) 111, 427, 739, 770
Hpy8I GTNNAC 2 cut(s) 383, 1063
Hpy99I CGWCG 2 cut(s) 43, 817
HpyAV CCTTC 2 cut(s) 151, 478
HpyCH4III ACNGT 3 cut(s) 32, 123, 726
HpyCH4IV ACGT 4 cut(s) 208, 292, 385, 848
HpyCH4V TGCA 3 cut(s) 71, 273, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 802
HpyF3I CTNAG 4 cut(s) 238, 605, 627, 768
HpySE526I ACGT 4 cut(s) 208, 292, 385, 848
Hsp92I GRCGYC 1 cut(s) 385
Hsp92II CATG 4 cut(s) 93, 367, 479, 827
Kzo9I GATC 5 cut(s) 510, 619, 663, 741, 1026
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 618
MaeI CTAG 3 cut(s) 165, 452, 1008
MaeII ACGT 4 cut(s) 208, 292, 385, 848
MaeIII GTNAC 3 cut(s) 49, 849, 1033
MalI GATC 5 cut(s) 512, 621, 665, 743, 1028
MbiI CCGCTC 4 cut(s) 174, 501, 528, 681
MboI GATC 5 cut(s) 510, 619, 663, 741, 1026
MboII GAAGA 8 cut(s) 48, 287, 290, 463, 661, 688, 832, 974
MflI RGATCY 2 cut(s) 619, 1026
MluCI AATT 6 cut(s) 189, 219, 348, 389, 551, 581
MlyI GAGTC 1 cut(s) 960
MmeI TCCRAC 1 cut(s) 988
MroXI GAANNNNTTC 2 cut(s) 21, 585
MseI TTAA 4 cut(s) 342, 671, 777, 1023
MspI CCGG 2 cut(s) 136, 152
MspR9I CCNGG 2 cut(s) 230, 310
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 2 cut(s) 230, 310
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 1 cut(s) 802
NcoI CCATGG 1 cut(s) 475
NdeII GATC 5 cut(s) 510, 619, 663, 741, 1026
NheI GCTAGC 1 cut(s) 1007
NlaIII CATG 4 cut(s) 93, 367, 479, 827
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 849
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 2 cut(s) 21, 585
PfeI GAWTC 3 cut(s) 114, 360, 632
PkrI GCNGC 4 cut(s) 176, 179, 503, 567
PleI GAGTC 1 cut(s) 960
PpsI GAGTC 1 cut(s) 960
Psp6I CCWGG 2 cut(s) 228, 308
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 228, 308
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 242, 264
PsuI RGATCY 2 cut(s) 619, 1026
SaqAI TTAA 4 cut(s) 342, 671, 777, 1023
SatI GCNGC 4 cut(s) 175, 178, 502, 566
Sau3AI GATC 5 cut(s) 510, 619, 663, 741, 1026
Sau96I GGNCC 2 cut(s) 242, 264
SchI GAGTC 1 cut(s) 960
ScrFI CCNGG 2 cut(s) 230, 310
SfaNI GCATC 1 cut(s) 618
SmlI CTYRAG 3 cut(s) 436, 737, 986
SmoI CTYRAG 3 cut(s) 436, 737, 986
Sse9I AATT 6 cut(s) 189, 219, 348, 389, 551, 581
SsiI CCGC 6 cut(s) 174, 177, 501, 528, 538, 681
SspI AATATT 1 cut(s) 877
SspMI CTAG 3 cut(s) 165, 452, 1008
StyD4I CCNGG 2 cut(s) 228, 308
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 3 cut(s) 32, 123, 726
TaiI ACGT 4 cut(s) 211, 295, 388, 851
TaqI TCGA 1 cut(s) 677
TasI AATT 6 cut(s) 189, 219, 348, 389, 551, 581
TauI GCSGC 3 cut(s) 177, 180, 504
TfiI GAWTC 3 cut(s) 114, 360, 632
Tru1I TTAA 4 cut(s) 342, 671, 777, 1023
Tru9I TTAA 4 cut(s) 342, 671, 777, 1023
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 849
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 849
TspDTI ATGAA 4 cut(s) 352, 662, 870, 1033
TspRI CASTG 1 cut(s) 729
XapI RAATTY 1 cut(s) 581
XmnI GAANNNNTTC 2 cut(s) 21, 585
XspI CTAG 3 cut(s) 165, 452, 1008
ZraI GACGTC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.