AT1G47770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005302
Physical Location & Seq
Forward (+)
17590266 .. 17591261
996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47770.1

Sequence Viewer

Length: 618 bp
ATGGCTGAAGAATTTGCCACCTTCTTCAGCCCTCTAAAGGAGGAAAGAAGCACACCACCAAAAACACAAACCACTACGCCTCTAACCGCAATGAACAATCCAAAGAGCCAAAAAAGACTACGAGGCTTGCCTCTAGAAGAGCGACCCGATGGTCCCGCCGATAGGAGCCGCACTTGCTACAAACTCCGGATATGGGCACTTGCTCTCAAGAATCAATACAAAGTATTGTATGGAGAATTCATGTCAAGTTTTTTCACATTGCGATCCCACGACGAAGCAGTGGAGGAATATCCTAGGGCTATCTATTACCAAGTAGAGACTATATATGACACTACTTCTCGATATAAACTGATAAGTTTTGATTATGGAAATTTGGGTCATGGAGACACAAGGATGGTCCAAGATTTGTTTTTATGTGATGGAGGGTTCAATAAAATGGCGCATCTTGGAGGCTACTATGGTGGTGAGATCGTTTTGCACCTTTTCAAAGGTTCATATGCATTGTTTGCAATAGCCGTCTATGACCACACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAATCCGTCAAGGCTTCAACAGATTTTTCAAACCTTGTGAACTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.48

Weight (kDa)

6.22

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 532
AccII CGCG 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 3 cut(s) 87, 156, 169
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 3 cut(s) 11, 236, 370
AcuI CTGAAG 2 cut(s) 10, 27
AfiI CCNNNNNNNGG 4 cut(s) 37, 162, 193, 532
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 4 cut(s) 430, 487, 585, 597
Alw26I GTCTC 2 cut(s) 311, 378
AlwI GGATC 1 cut(s) 258
Aor13HI TCCGGA 1 cut(s) 186
ApoI RAATTY 3 cut(s) 11, 236, 370
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 152, 397
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 152, 397
AvrII CCTAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 199
BccI CCATC 3 cut(s) 143, 388, 413
BceAI ACGGC 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 311, 378
BfaI CTAG 2 cut(s) 134, 294
BisI GCNGC 1 cut(s) 169
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 152, 397
BmgT120I GGNCC 2 cut(s) 152, 397
BmiI GGNNCC 2 cut(s) 154, 167
BmsI GCATC 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 162, 193, 532
Bse3DI GCAATG 2 cut(s) 96, 257
BseAI TCCGGA 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 4 cut(s) 37, 162, 193, 532
BseMI GCAATG 2 cut(s) 96, 257
BseSI GKGCMC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 4 cut(s) 37, 162, 193, 532
BsmAI GTCTC 2 cut(s) 311, 378
BsmFI GGGAC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 263, 468
Bsp68I TCGCGA 1 cut(s) 548
BspACI CCGC 3 cut(s) 87, 156, 169
BspEI TCCGGA 1 cut(s) 186
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 2 cut(s) 154, 167
BspPI GGATC 1 cut(s) 258
BspQI GCTCTTC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 96, 257
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 263, 468
BssT1I CCWWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 2 cut(s) 266, 471
BstMAI GTCTC 2 cut(s) 311, 378
BstMBI GATC 2 cut(s) 263, 468
BstMWI GCNNNNNNNGC 2 cut(s) 174, 506
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 548
BtsCI GGATG 1 cut(s) 399
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BtuMI TCGCGA 1 cut(s) 548
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 152, 397
CviAII CATG 3 cut(s) 241, 380, 562
DpnI GATC 2 cut(s) 265, 470
DpnII GATC 2 cut(s) 263, 468
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 152, 397
Eco57I CTGAAG 2 cut(s) 10, 27
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 244, 383, 565
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 240, 379, 561
FauI CCCGC 1 cut(s) 163
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 2 cut(s) 134, 294
GlaI GCGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 169
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 442
Hin1II CATG 3 cut(s) 244, 383, 565
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 2 cut(s) 211, 569
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 2 cut(s) 559, 607
Hpy188III TCNNGA 5 cut(s) 134, 187, 208, 339, 547
Hpy8I GTNNAC 2 cut(s) 559, 607
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 3 cut(s) 478, 500, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 506
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 3 cut(s) 244, 383, 565
HspAI GCGC 1 cut(s) 440
Kpn2I TCCGGA 1 cut(s) 186
Kzo9I GATC 2 cut(s) 263, 468
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 1 cut(s) 200
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 134, 294
MaeII ACGT 1 cut(s) 530
MalI GATC 2 cut(s) 265, 470
MboI GATC 2 cut(s) 263, 468
MboII GAAGA 3 cut(s) 16, 20, 149
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 3 cut(s) 11, 236, 370
MnlI CCTC 9 cut(s) 34, 42, 90, 116, 141, 277, 416, 443, 532
Mph1103I ATGCAT 1 cut(s) 502
MroI TCCGGA 1 cut(s) 186
MseI TTAA 1 cut(s) 616
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 174, 506
NdeI CATATG 1 cut(s) 496
NdeII GATC 2 cut(s) 263, 468
NlaIII CATG 3 cut(s) 244, 383, 565
NlaIV GGNNCC 2 cut(s) 154, 167
NruI TCGCGA 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PfeI GAWTC 2 cut(s) 211, 569
PflMI CCANNNNNTGG 1 cut(s) 532
PkrI GCNGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 154, 167
PspPI GGNCC 2 cut(s) 152, 397
RruI TCGCGA 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 616
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 263, 468
Sau96I GGNCC 2 cut(s) 152, 397
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 23, 483, 493, 533, 603
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 2 cut(s) 152, 397
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 11, 236, 370
SsiI CCGC 3 cut(s) 87, 156, 169
SspMI CTAG 2 cut(s) 134, 294
StyI CCWWGG 1 cut(s) 293
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 340, 537, 567
TasI AATT 3 cut(s) 11, 236, 370
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 211, 569
Tru1I TTAA 1 cut(s) 616
Tru9I TTAA 1 cut(s) 616
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 3 cut(s) 107, 229, 483
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 152, 397
XapI RAATTY 3 cut(s) 11, 236, 370
XbaI TCTAGA 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 2 cut(s) 134, 294
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.