AT2G03965

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005302
Physical Location & Seq
Forward (+)
1251510 .. 1252989
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03965.1

Sequence Viewer

Length: 918 bp
ATGTTGCGGGACCAGAGCTCTGCATTGACGCTGGAGTCGAAAAAGCAAAAGACGGCGGAAGAATCATTCACAGCAGCTCGATCATCATCTTTAGAAGCTCCAACCCTACTAGATCTTGCCACAGAATTTCAATCTATGTTGACCGGAATTGTTTCGCCGCCTCAGATTGGGAGGAAGACAAAGGTAAAGCTGCTTAACCTAATCATGCTGAATGTCTCTCAGTTTGGGCCAGGCCCAAGAGTGCTCTACATCCCCTGCAGCCCATTAGACATTCTGTCTCAGCCCAACAGGAAAGTCTTCGGCAGAAGCCCAACTTTCATAAGGCCCAGTGAGAGAGTTAGGTTGGTCTTGTCTTTCCTTTTCATAAAACCTGGTGGTTACTTTAACTCGGTGGTTAGTTTAACTCGGTGGATAATCGTTCTTAATCATTCCGTCTCAAGCATAAGGGACGATGCATCTCAACTCTCTCGAACATTTCTGGAGAAACGGCCTTGGTATGTGCAACTTAACTCTTTCTCAAGCCCTTATACTTCAATGATGGATGGTAGTCTTTCGATTGGCCATGGACACCAATCTAGCTTCGCATCTTTCATTTGGTTATGGCATTGTGATTATCTATGGCGTTTCCCACAAACCTTCTTCACCCTTTGGCCATTAATTCCATCGAAATCCTATTTAGAACTTTTCAAAAGCTCTTATGCGTCGACCGCACGAGCCTTCATTGACCACCAGCTGGTCCGGGAATCCTCGAAGCTCGTCTTCAACCATGTTTACCTCTTGGTTTCAACAGATTCTCCAAGTCTTGCAAGCTTCTTAAAGCCGATCACAACTTTGGAAAACTCATGGAACCCTTATCTTTATGTTCCTTATAATGTTTTACTTTTAGTTTGTATGAATTCTCCTCCTTTGAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.71

Weight (kDa)

9.63

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 870
AasI GACNNNNNNGTC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 733
AccI GTMKAC 1 cut(s) 704
AciI CCGC 4 cut(s) 7, 56, 158, 708
AcoI YGGCCR 2 cut(s) 559, 650
AcsI RAATTY 2 cut(s) 125, 895
AfiI CCNNNNNNNGG 2 cut(s) 167, 733
AgsI TTSAA 6 cut(s) 131, 534, 688, 763, 786, 910
AhdI GACNNNNNGTC 1 cut(s) 274
AjnI CCWGG 2 cut(s) 229, 370
AluBI AGCT 9 cut(s) 18, 77, 98, 190, 579, 693, 733, 754, 810
AluI AGCT 9 cut(s) 18, 77, 98, 190, 579, 693, 733, 754, 810
Alw21I GWGCWC 2 cut(s) 20, 246
Alw26I GTCTC 3 cut(s) 220, 282, 439
AoxI GGCC 6 cut(s) 227, 232, 323, 488, 559, 650
ApeKI GCWGC 3 cut(s) 74, 190, 258
ApoI RAATTY 2 cut(s) 125, 895
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 151, 296
AspS9I GGNCC 5 cut(s) 10, 227, 233, 324, 736
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 634
AvaII GGWCC 2 cut(s) 10, 736
BalI TGGCCA 2 cut(s) 561, 652
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 3 cut(s) 182, 289, 751
Bbv12I GWGCWC 2 cut(s) 20, 246
BbvI GCAGC 3 cut(s) 86, 177, 270
BccI CCATC 3 cut(s) 532, 536, 670
BceAI ACGGC 2 cut(s) 69, 503
BciT130I CCWGG 2 cut(s) 231, 372
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 3 cut(s) 220, 282, 439
BfaI CTAG 2 cut(s) 110, 576
BfmI CTRYAG 1 cut(s) 256
BglII AGATCT 1 cut(s) 112
BisI GCNGC 4 cut(s) 75, 158, 191, 259
BlsI GCNGC 4 cut(s) 76, 159, 192, 260
Bme1390I CCNGG 3 cut(s) 231, 372, 740
Bme18I GGWCC 2 cut(s) 10, 736
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 5 cut(s) 10, 227, 233, 324, 736
BmiI GGNNCC 2 cut(s) 11, 848
BmrFI CCNGG 3 cut(s) 231, 372, 740
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 3 cut(s) 442, 464, 593
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 3 cut(s) 182, 289, 751
BpmI CTGGAG 2 cut(s) 53, 500
BpuEI CTTGAG 2 cut(s) 421, 502
BpuMI CCSGG 1 cut(s) 740
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 491, 562
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 733
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 2 cut(s) 231, 372
BseDI CCNNGG 2 cut(s) 491, 562
BseGI GGATG 2 cut(s) 249, 547
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 167, 733
BseMII CTCAG 3 cut(s) 176, 233, 293
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 891
BseXI GCAGC 3 cut(s) 86, 177, 270
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 6 cut(s) 229, 234, 325, 490, 561, 652
BsiEI CGRYCG 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 20, 246
BsiSI CCGG 2 cut(s) 144, 739
BslFI GGGAC 2 cut(s) 23, 461
BslI CCNNNNNNNGG 2 cut(s) 167, 733
BsmAI GTCTC 3 cut(s) 220, 282, 439
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 23, 461
BsnI GGCC 6 cut(s) 229, 234, 325, 490, 561, 652
Bsp1286I GDGCHC 2 cut(s) 20, 246
Bsp143I GATC 3 cut(s) 80, 112, 822
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 4 cut(s) 7, 56, 158, 708
BspANI GGCC 6 cut(s) 229, 234, 325, 490, 561, 652
BspCNI CTCAG 3 cut(s) 175, 232, 292
BspLI GGNNCC 2 cut(s) 11, 848
BspMAI CTGCAG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 491, 562
BssMI GATC 3 cut(s) 80, 112, 822
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 491, 562
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 231, 372
BstC8I GCNNGC 1 cut(s) 808
BstDEI CTNAG 3 cut(s) 162, 219, 279
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 2 cut(s) 249, 547
BstKTI GATC 3 cut(s) 83, 115, 825
BstMAI GTCTC 3 cut(s) 220, 282, 439
BstMBI GATC 3 cut(s) 80, 112, 822
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 2 cut(s) 231, 372
BstSCI CCNGG 3 cut(s) 229, 370, 738
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 86, 177, 270
BstV2I GAAGAC 3 cut(s) 182, 289, 751
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 6 cut(s) 229, 234, 325, 490, 561, 652
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 2 cut(s) 249, 547
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 808
Cfr13I GGNCC 5 cut(s) 10, 227, 233, 324, 736
CseI GACGC 2 cut(s) 37, 690
CsiI ACCWGGT 1 cut(s) 370
CviAII CATG 4 cut(s) 205, 563, 767, 843
DdeI CTNAG 3 cut(s) 162, 219, 279
DpnI GATC 3 cut(s) 82, 114, 824
DpnII GATC 3 cut(s) 80, 112, 822
DrdI GACNNNNNNGTC 1 cut(s) 34
DriI GACNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 2 cut(s) 559, 650
Eam1105I GACNNNNNGTC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 491, 562
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 10, 736
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 229, 370
EcoT14I CCWWGG 2 cut(s) 491, 562
EcoT22I ATGCAT 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 2 cut(s) 491, 562
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 4 cut(s) 208, 566, 770, 846
FalI AAGNNNNNCTT 4 cut(s) 298, 330, 743, 775
FaqI GGGAC 2 cut(s) 23, 461
FatI CATG 4 cut(s) 204, 562, 766, 842
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 4 cut(s) 75, 158, 191, 259
FokI GGATG 2 cut(s) 236, 554
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 75, 158, 191, 259
FspBI CTAG 2 cut(s) 110, 576
GluI GCNGC 4 cut(s) 75, 158, 191, 259
GsuI CTGGAG 2 cut(s) 53, 500
HaeIII GGCC 6 cut(s) 229, 234, 325, 490, 561, 652
HapII CCGG 2 cut(s) 144, 739
HgaI GACGC 2 cut(s) 37, 690
Hin1II CATG 4 cut(s) 208, 566, 770, 846
HincII GTYRAC 2 cut(s) 141, 705
HindII GTYRAC 2 cut(s) 141, 705
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 4 cut(s) 35, 62, 743, 791
HpaII CCGG 2 cut(s) 144, 739
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 3 cut(s) 141, 705, 772
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 468, 479
Hpy8I GTNNAC 3 cut(s) 141, 705, 772
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 2 cut(s) 646, 727
HpyCH4V TGCA 5 cut(s) 23, 258, 455, 502, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 3 cut(s) 162, 219, 279
Hsp92II CATG 4 cut(s) 208, 566, 770, 846
Kzo9I GATC 3 cut(s) 80, 112, 822
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 86, 177, 270
LweI GCATC 3 cut(s) 442, 464, 593
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 2 cut(s) 110, 576
MaeIII GTNAC 1 cut(s) 377
MalI GATC 3 cut(s) 82, 114, 824
MboI GATC 3 cut(s) 80, 112, 822
MboII GAAGA 5 cut(s) 71, 187, 289, 631, 751
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 20, 246
MlsI TGGCCA 2 cut(s) 561, 652
MluCI AATT 4 cut(s) 125, 147, 657, 895
MluNI TGGCCA 2 cut(s) 561, 652
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 5 cut(s) 165, 171, 757, 785, 912
Mox20I TGGCCA 2 cut(s) 561, 652
Mph1103I ATGCAT 1 cut(s) 457
MroXI GAANNNNTTC 2 cut(s) 151, 296
MscI TGGCCA 2 cut(s) 561, 652
MseI TTAA 8 cut(s) 195, 384, 401, 423, 507, 656, 815, 916
Msp20I TGGCCA 2 cut(s) 561, 652
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 2 cut(s) 144, 739
MspR9I CCNGG 3 cut(s) 231, 372, 740
MvaI CCWGG 2 cut(s) 231, 372
MwoI GCNNNNNNNGC 1 cut(s) 707
NciI CCSGG 1 cut(s) 740
NcoI CCATGG 1 cut(s) 562
NdeII GATC 3 cut(s) 80, 112, 822
NlaIII CATG 4 cut(s) 208, 566, 770, 846
NlaIV GGNNCC 2 cut(s) 11, 848
NsiI ATGCAT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 151, 296
PfeI GAWTC 3 cut(s) 62, 743, 791
PflMI CCANNNNNTGG 1 cut(s) 733
PfoI TCCNGGA 1 cut(s) 738
PkrI GCNGC 4 cut(s) 76, 159, 192, 260
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 656
PsiI TTATAA 1 cut(s) 870
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 229, 370
PspGI CCWGG 2 cut(s) 229, 370
PspN4I GGNNCC 2 cut(s) 11, 848
PspPI GGNCC 5 cut(s) 10, 227, 233, 324, 736
PstI CTGCAG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 733
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 703
SaqAI TTAA 8 cut(s) 195, 384, 401, 423, 507, 656, 815, 916
SatI GCNGC 4 cut(s) 75, 158, 191, 259
Sau3AI GATC 3 cut(s) 80, 112, 822
Sau96I GGNCC 5 cut(s) 10, 227, 233, 324, 736
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 231, 372, 740
SduI GDGCHC 2 cut(s) 20, 246
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 3 cut(s) 442, 464, 593
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 2 cut(s) 10, 736
SmlI CTYRAG 2 cut(s) 436, 517
SmoI CTYRAG 2 cut(s) 436, 517
Sse9I AATT 4 cut(s) 125, 147, 657, 895
SsiI CCGC 4 cut(s) 7, 56, 158, 708
SspMI CTAG 2 cut(s) 110, 576
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 229, 370, 738
StyI CCWWGG 2 cut(s) 491, 562
TaqI TCGA 7 cut(s) 38, 79, 469, 554, 665, 704, 749
TasI AATT 4 cut(s) 125, 147, 657, 895
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 3 cut(s) 62, 743, 791
Tru1I TTAA 8 cut(s) 195, 384, 401, 423, 507, 656, 815, 916
Tru9I TTAA 8 cut(s) 195, 384, 401, 423, 507, 656, 815, 916
TscAI CASTG 1 cut(s) 334
TseI GCWGC 3 cut(s) 74, 190, 258
TspDTI ATGAA 5 cut(s) 307, 352, 580, 709, 908
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 2 cut(s) 10, 736
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 2 cut(s) 125, 895
XmiI GTMKAC 1 cut(s) 704
XmnI GAANNNNTTC 2 cut(s) 151, 296
XspI CTAG 2 cut(s) 110, 576
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.