Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005302

Physical Location & Seq

Genomic Coordinates Reverse (-)

5555316 .. 5556616

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08691.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTTTCTTCTACTTTTTTCGAAGTTGTACCCTTATATCCAACATTATCACGACCGATGCAAATGAAATCTTTATCAAAACTGTCTCTAGATCAATTTTCTTTAAAATCTTCGCGATTCTCGTCGTTCGTCCCTCTCACAGGTTCTCCTCGAAGTCAAGACCAGCACCTCTATGCTCCTCTTTCTGGGACTCAGATCCCCTCACCAAGTGTTTTGCTTGGTTGCGACAGGAACGGAGCTCTGCGTTGACGCTGGAGCCGATGAAGTACATGACGGTAGAAGAATCATCCCAAAACGGCACCACAACCACAGATCCGCCGCCGCAGTCAGAAAAGAAGTCAAAGGAAGGGTTAACCCTAACCCTAATTCTACTATTTTTCACTCGTAATGGGCCTGGCCCAAGAAGTTTATTTTCTCCATCCAGCCCACCTTACAATCTATCCCAGCTCAGACATAAACTAAGGGGCATAAGCCCATCTATTATAAGGCACAGACATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0016070 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

10.15

Isoelectric Point (pI)

81.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37000 AT1G47770 AT2G03965 AT2G04378 AT2G04378 AT2G06845 AT2G10955 AT2G11626 AT2G15025 AT3G01345 AT3G24542 AT3G43574 AT3G43580 AT3G44070 AT3G44070 AT3G44265 AT4G06643 AT4G08691 AT4G08874 AT4G08874 AT4G29200 AT5G01080 AT5G24480 AT5G26622 AT5G26622 AT5G28919 AT5G35760 AT5G35890 AT5G49250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	317, 320, 323
AclWI	GGATC	2 cut(s)	191, 308
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	31, 269
AfiI	CCNNNNNNNGG	2 cut(s)	141, 186
AflIII	ACRYGT	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	240, 448
AluI	AGCT	2 cut(s)	240, 448
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	191, 308
AoxI	GGCC	2 cut(s)	392, 397
AspS9I	GGNCC	2 cut(s)	392, 398
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	242
BccI	CCATC	2 cut(s)	427, 484
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	320, 323
BlsI	GCNGC	2 cut(s)	321, 324
Bme1390I	CCNGG	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	392, 398
BmiI	GGNNCC	2 cut(s)	258, 301
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 186
BseBI	CCWGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	287, 419
BseLI	CCNNNNNNNGG	2 cut(s)	141, 186
BseMII	CTCAG	2 cut(s)	207, 463
BseRI	GAGGAG	2 cut(s)	139, 169
BseYI	CCCAGC	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	394, 399
BshNI	GGYRCC	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	117, 203
BslI	CCNNNNNNNGG	2 cut(s)	141, 186
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	117, 203
BsnI	GGCC	2 cut(s)	394, 399
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	92, 196, 313
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	3 cut(s)	317, 320, 323
BspANI	GGCC	2 cut(s)	394, 399
BspCNI	CTCAG	2 cut(s)	206, 462
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	258, 301
BspPI	GGATC	2 cut(s)	191, 308
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	299
BssMI	GATC	3 cut(s)	92, 196, 313
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	85, 277
BstBI	TTCGAA	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	193, 449, 461
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	287, 419
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	95, 199, 316
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	92, 196, 313
BstMCI	CGRYCG	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	394
BstUI	CGCG	1 cut(s)	116
BstX2I	RGATCY	2 cut(s)	196, 313
BstYI	RGATCY	2 cut(s)	196, 313
BsuRI	GGCC	2 cut(s)	394, 399
BtsCI	GGATG	2 cut(s)	287, 419
BtuMI	TCGCGA	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	392, 398
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	30, 268
CviAII	CATG	2 cut(s)	271, 497
CviJI	RGCY	8 cut(s)	5, 240, 259, 394, 399, 426, 448, 474
CviKI_1	RGCY	8 cut(s)	5, 240, 259, 394, 399, 426, 448, 474
CviQI	GTAC	2 cut(s)	30, 268
DdeI	CTNAG	3 cut(s)	193, 449, 461
DpnI	GATC	3 cut(s)	94, 198, 315
DpnII	GATC	3 cut(s)	92, 196, 313
DraI	TTTAAA	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	2 cut(s)	274, 500
FaiI	YATR	7 cut(s)	38, 175, 272, 456, 470, 485, 498
FaqI	GGGAC	2 cut(s)	117, 203
FatI	CATG	2 cut(s)	270, 496
Fnu4HI	GCNGC	2 cut(s)	320, 323
FokI	GGATG	2 cut(s)	274, 406
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	320, 323
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	2 cut(s)	320, 323
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	394, 399
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	274, 500
HincII	GTYRAC	2 cut(s)	249, 354
HindII	GTYRAC	2 cut(s)	249, 354
HinfI	GANTC	3 cut(s)	118, 191, 284
HpaI	GTTAAC	1 cut(s)	354
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	249, 354
Hpy188I	TCNGA	3 cut(s)	196, 331, 452
Hpy188III	TCNNGA	4 cut(s)	52, 90, 115, 159
Hpy8I	GTNNAC	2 cut(s)	249, 354
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	85, 277
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	193, 449, 461
Hsp92II	CATG	2 cut(s)	274, 500
KspAI	GTTAAC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	92, 196, 313
LmnI	GCTCC	3 cut(s)	182, 237, 256
LpnPI	CCDG	9 cut(s)	127, 172, 177, 215, 239, 381, 408, 436, 458
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	90
MalI	GATC	3 cut(s)	94, 198, 315
MboI	GATC	3 cut(s)	92, 196, 313
MboII	GAAGA	2 cut(s)	103, 293
MflI	RGATCY	2 cut(s)	196, 313
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	2 cut(s)	96, 366
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	145, 160, 180, 190, 212
MseI	TTAA	2 cut(s)	105, 353
MslI	CAYNNNNRTG	2 cut(s)	172, 495
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	116
NdeII	GATC	3 cut(s)	92, 196, 313
NlaIII	CATG	2 cut(s)	274, 500
NlaIV	GGNNCC	2 cut(s)	258, 301
NruI	TCGCGA	1 cut(s)	116
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	22
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 257
PfeI	GAWTC	2 cut(s)	118, 284
PkrI	GCNGC	2 cut(s)	321, 324
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	258, 301
PspPI	GGNCC	2 cut(s)	392, 398
PsuI	RGATCY	2 cut(s)	196, 313
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	2 cut(s)	31, 269
RsaNI	GTAC	2 cut(s)	30, 268
RseI	CAYNNNNRTG	2 cut(s)	172, 495
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	105, 353
SatI	GCNGC	2 cut(s)	320, 323
Sau3AI	GATC	3 cut(s)	92, 196, 313
Sau96I	GGNCC	2 cut(s)	392, 398
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	146, 172, 242, 433, 450
SfaNI	GCATC	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	172, 495
Sse9I	AATT	2 cut(s)	96, 366
SsiI	CCGC	3 cut(s)	317, 320, 323
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	85, 277
TaqI	TCGA	2 cut(s)	22, 152
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	96, 366
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	2 cut(s)	322, 325
TfiI	GAWTC	2 cut(s)	118, 284
Tru1I	TTAA	2 cut(s)	105, 353
Tru9I	TTAA	2 cut(s)	105, 353
TspDTI	ATGAA	2 cut(s)	81, 278
TspGWI	ACGGA	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.