AT3G43574

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005302
Physical Location & Seq
Reverse (-)
15479819 .. 15480028
210 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43574.1

Sequence Viewer

Length: 210 bp
ATGGTACCGTCACTCGTTGATCTTGAGTCTCTGGACCACTTTTGTGCCACAACCTCCGGTGAAGCTTCATTCCACTCTGATCTTCAATTTGCCGAAGTCCTGCCGCCACAGTCACCAACTCTTCATCGCAGCCAGAGAGACACTAGGGTTCCTGTTATTGGGCCTCCCCCATTTCAGCCCATTTCTCTCTTGGCCCATTGTCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

5.85

Isoelectric Point (pI)

68.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 104
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 33, 132
AoxI GGCC 2 cut(s) 161, 192
ApeKI GCWGC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 3 cut(s) 34, 161, 193
AsuHPI GGTGA 2 cut(s) 71, 105
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 33, 132
BfaI CTAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 104, 130
BlsI GCNGC 2 cut(s) 105, 131
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 34, 161, 193
BmiI GGNNCC 2 cut(s) 6, 150
BpuEI CTTGAG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 163, 194
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 33, 132
BsnI GGCC 2 cut(s) 163, 194
Bsp143I GATC 2 cut(s) 19, 79
BspACI CCGC 1 cut(s) 104
BspANI GGCC 2 cut(s) 163, 194
BspLI GGNNCC 2 cut(s) 6, 150
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 2 cut(s) 19, 79
Bst4CI ACNGT 2 cut(s) 9, 111
Bst6I CTCTTC 1 cut(s) 126
BstKTI GATC 2 cut(s) 22, 82
BstMAI GTCTC 2 cut(s) 33, 132
BstMBI GATC 2 cut(s) 19, 79
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 163, 194
BtgZI GCGATG 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 34, 161, 193
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 5 cut(s) 65, 132, 163, 178, 194
CviKI_1 RGCY 5 cut(s) 65, 132, 163, 178, 194
CviQI GTAC 1 cut(s) 5
DpnI GATC 2 cut(s) 21, 81
DpnII GATC 2 cut(s) 19, 79
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 34
FaiI YATR 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 104, 130
Fsp4HI GCNGC 2 cut(s) 104, 130
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 104, 130
HaeIII GGCC 2 cut(s) 163, 194
HapII CCGG 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 71, 105
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 23, 32
HpyCH4III ACNGT 2 cut(s) 9, 111
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 19, 79
LpnPI CCDG 5 cut(s) 17, 70, 113, 146, 165
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 9, 111
MalI GATC 2 cut(s) 21, 81
MboI GATC 2 cut(s) 19, 79
MboII GAAGA 2 cut(s) 74, 113
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 64, 174
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 1 cut(s) 57
NdeII GATC 2 cut(s) 19, 79
NlaIV GGNNCC 2 cut(s) 6, 150
NmuCI GTSAC 2 cut(s) 9, 111
OliI CACNNNNGTG 1 cut(s) 42
PkrI GCNGC 2 cut(s) 105, 131
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 6, 150
PspPI GGNCC 3 cut(s) 34, 161, 193
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 42
SatI GCNGC 2 cut(s) 104, 130
Sau3AI GATC 2 cut(s) 19, 79
Sau96I GGNCC 3 cut(s) 34, 161, 193
SchI GAGTC 1 cut(s) 35
SetI ASST 2 cut(s) 56, 67
SgeI CNNG 9 cut(s) 26, 35, 44, 69, 112, 145, 156, 164, 202
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 9, 111
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 106
TseFI GTSAC 2 cut(s) 9, 111
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 2 cut(s) 9, 111
TspDTI ATGAA 2 cut(s) 57, 113
VpaK11BI GGWCC 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.