AT5G24480
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005302
Physical Location & Seq
Reverse (-)
8363831 .. 8365036
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24480.1

Sequence Viewer

Length: 1053 bp
ATGCTTTGGCTCTTCTCTCAATCATCCCGACCACATTTTCAATCGATTCATTTTTTCGACTGCTCATTGACCAGTGACAGAGGGCAGAGGAGTTGGCCGGCGACCCTTCCTTCTCCTCAGCCTTTGTCTGCATCGACCTTTTTGAAGTGTTCTCCAACAGAACAACCCCATCTCTTCCGATCTAAATCCGATCCGATCTCATCCATCACCACCCTTACCTCCGATCTCTTTTATGTGTGTACCTCGTCGTTGATGATCTCAGTCCCAACGACATCGCTTAGCTTTCATCGGAGGTCCTATCTGTCACCACAGATCCGTCGTACCATCACCGTCCTCTGTTCAACGGAAGCCTTGCTACGGTTTCTCTTAATGGGCCACTCATGTTTGAGCCCATTAACCAATTCTAGGCCTATCCCCAAAAGCAATGACCCATCTCCTTTAATGACTTGGCCCGGCCCCTCCAAAGCGTTTCCGCAAAATCATAGGTGTCTTATTCATGTTGCTAAATGTTTGAAGATGATCGACATTATGATCCCGTCTCTAAGGAGCGATGATTACCGAAGCTTCTTTAAGTGTTCATCTCCGATTCATTTGCTTATTGACTTCATCCTTGAGATAATTAGCTACACCTTGGGCACTACTCTTGAAAGTAAAAGTTTGATGAAGAATGGCATTATGATCCCGTCTCCAAGGAACGGTGGTTACCAAATCTTCTCTAATCATTTTTACCCGTTAATCCTAAACCTAGAGCCCCAAACCAAACCCGAAAAAACCTTTACCTCCCATGAGTCTCCACCATTGGTCCTTACGTCCTTATTGCGCTTCGTGCCGGCAAGCCATGTGGCAAAGGACACATTTTCAAAGTCAAAAGATCAAGTTTTCTTGATCGTGACTACACCAAAGCTCCCTGACTTGGTCGCGAAAGTGTCTATGATACATCATGAGGTCATATGTGGCTTGTTGTTTGATTGCTTCTGTCTCTGTTCCTCTATGGATTATAAAAGCTATCGACCTTTTCTTGTTGTTAATTCTAGTTCTCTGAAGTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

350

Amino Acids

39.47

Weight (kDa)

9.21

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccII CGCG 1 cut(s) 920
AciI CCGC 1 cut(s) 473
AclWI GGATC 4 cut(s) 185, 307, 526, 673
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 2 cut(s) 241, 322
AfiI CCNNNNNNNGG 4 cut(s) 357, 405, 695, 913
AgsI TTSAA 6 cut(s) 41, 145, 342, 514, 647, 861
AluBI AGCT 5 cut(s) 282, 564, 624, 904, 1005
AluI AGCT 5 cut(s) 282, 564, 624, 904, 1005
Alw26I GTCTC 4 cut(s) 543, 690, 795, 983
AlwI GGATC 4 cut(s) 185, 307, 526, 673
AoxI GGCC 5 cut(s) 95, 373, 407, 449, 454
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 5 cut(s) 294, 373, 450, 455, 802
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 199, 297, 319
AvaII GGWCC 2 cut(s) 294, 802
BaeGI GKGCMC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 392, 753
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 4 cut(s) 177, 212, 332, 439
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 4 cut(s) 543, 690, 795, 983
BfaI CTAG 3 cut(s) 405, 746, 1032
BlpI GCTNAGC 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 2 cut(s) 294, 802
BmgT120I GGNCC 5 cut(s) 294, 373, 450, 455, 802
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 630, 689
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 405, 695, 913
Bse118I RCCGGY 2 cut(s) 97, 829
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 630, 689
BseGI GGATG 3 cut(s) 23, 200, 606
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 4 cut(s) 357, 405, 695, 913
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 131, 273
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 103, 105
BseSI GKGCMC 1 cut(s) 638
Bsh1236I CGCG 1 cut(s) 920
BshFI GGCC 5 cut(s) 97, 375, 409, 451, 456
BshVI ATCGAT 1 cut(s) 44
BsiSI CCGG 3 cut(s) 98, 453, 830
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 357, 405, 695, 913
BsmAI GTCTC 4 cut(s) 543, 690, 795, 983
BsmBI CGTCTC 2 cut(s) 543, 690
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 5 cut(s) 97, 375, 409, 451, 456
Bsp1286I GDGCHC 3 cut(s) 392, 638, 753
Bsp1720I GCTNAGC 1 cut(s) 278
Bsp68I TCGCGA 1 cut(s) 920
BspACI CCGC 1 cut(s) 473
BspANI GGCC 5 cut(s) 97, 375, 409, 451, 456
BspCNI CTCAG 2 cut(s) 130, 272
BspDI ATCGAT 1 cut(s) 44
BspFNI CGCG 1 cut(s) 920
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 4 cut(s) 185, 307, 526, 673
BspQI GCTCTTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 430
BsrFI RCCGGY 2 cut(s) 97, 829
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 2 cut(s) 97, 829
BssECI CCNNGG 2 cut(s) 630, 689
BssT1I CCWWGG 2 cut(s) 630, 689
Bst4CI ACNGT 3 cut(s) 331, 360, 698
Bst6I CTCTTC 2 cut(s) 17, 179
BstC8I GCNNGC 3 cut(s) 99, 831, 835
BstDEI CTNAG 4 cut(s) 117, 259, 278, 542
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 3 cut(s) 23, 200, 606
BstFNI CGCG 1 cut(s) 920
BstHHI GCGC 1 cut(s) 822
BstMAI GTCTC 4 cut(s) 543, 690, 795, 983
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 1 cut(s) 920
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 5 cut(s) 97, 375, 409, 451, 456
BsuTUI ATCGAT 1 cut(s) 44
BtgZI GCGATG 2 cut(s) 258, 564
BtsCI GGATG 3 cut(s) 23, 200, 606
BtsIMutI CAGTG 1 cut(s) 79
BtuMI TCGCGA 1 cut(s) 920
Cac8I GCNNGC 3 cut(s) 99, 831, 835
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 822
Cfr10I RCCGGY 2 cut(s) 97, 829
Cfr13I GGNCC 5 cut(s) 294, 373, 450, 455, 802
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 240, 321
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 5 cut(s) 381, 497, 785, 839, 941
CviQI GTAC 2 cut(s) 240, 321
DdeI CTNAG 4 cut(s) 117, 259, 278, 542
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 17, 179
EarI CTCTTC 2 cut(s) 17, 179
Eco130I CCWWGG 2 cut(s) 630, 689
Eco147I AGGCCT 1 cut(s) 409
Eco24I GRGCYC 2 cut(s) 392, 753
Eco47I GGWCC 2 cut(s) 294, 802
Eco91I GGTNACC 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 294
EcoO65I GGTNACC 1 cut(s) 701
EcoT14I CCWWGG 2 cut(s) 630, 689
EcoT38I GRGCYC 2 cut(s) 392, 753
ErhI CCWWGG 2 cut(s) 630, 689
Esp3I CGTCTC 2 cut(s) 543, 690
FaeI CATG 5 cut(s) 384, 500, 788, 842, 944
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 380, 496, 784, 838, 940
FauNDI CATATG 1 cut(s) 950
FokI GGATG 3 cut(s) 10, 187, 593
FriOI GRGCYC 2 cut(s) 392, 753
FspBI CTAG 3 cut(s) 405, 746, 1032
GlaI GCGC 1 cut(s) 821
HaeIII GGCC 5 cut(s) 97, 375, 409, 451, 456
HapII CCGG 3 cut(s) 98, 453, 830
HhaI GCGC 1 cut(s) 822
Hin1II CATG 5 cut(s) 384, 500, 788, 842, 944
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 3 cut(s) 46, 586, 788
HpaII CCGG 3 cut(s) 98, 453, 830
HphI GGTGA 3 cut(s) 199, 297, 319
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 7 cut(s) 179, 190, 195, 223, 291, 585, 1041
Hpy188III TCNNGA 6 cut(s) 27, 644, 883, 889, 919, 941
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 2 cut(s) 250, 321
HpyAV CCTTC 2 cut(s) 116, 120
HpyCH4III ACNGT 3 cut(s) 331, 360, 698
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 4 cut(s) 117, 259, 278, 542
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 5 cut(s) 384, 500, 788, 842, 944
HspAI GCGC 1 cut(s) 820
KroI GCCGGC 2 cut(s) 97, 829
KroNI GCCGGC 2 cut(s) 99, 831
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 546, 909
LpnPI CCDG 5 cut(s) 85, 111, 466, 843, 921
LweI GCATC 1 cut(s) 140
MaeI CTAG 3 cut(s) 405, 746, 1032
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 4 cut(s) 74, 303, 701, 889
MboII GAAGA 5 cut(s) 4, 166, 526, 676, 703
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 3 cut(s) 392, 638, 753
MluCI AATT 3 cut(s) 400, 618, 1027
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 179
MroNI GCCGGC 2 cut(s) 97, 829
MseI TTAA 6 cut(s) 368, 395, 440, 570, 734, 1026
MspI CCGG 3 cut(s) 98, 453, 830
MspR9I CCNGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 920
MwoI GCNNNNNNNGC 1 cut(s) 826
NaeI GCCGGC 2 cut(s) 99, 831
NciI CCSGG 1 cut(s) 453
NdeI CATATG 1 cut(s) 950
NgoMIV GCCGGC 2 cut(s) 97, 829
NlaIII CATG 5 cut(s) 384, 500, 788, 842, 944
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 3 cut(s) 74, 303, 889
NruI TCGCGA 1 cut(s) 920
PagI TCATGA 1 cut(s) 940
PceI AGGCCT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 17
PdiI GCCGGC 2 cut(s) 99, 831
PfeI GAWTC 2 cut(s) 46, 586
PflFI GACNNNGTC 1 cut(s) 914
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 294
PsiI TTATAA 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 701
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 5 cut(s) 294, 373, 450, 455, 802
PspPPI RGGWCCY 1 cut(s) 294
PsrI GAACNNNNNNTAC 2 cut(s) 686, 718
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 914
RruI TCGCGA 1 cut(s) 920
RsaI GTAC 2 cut(s) 241, 322
RsaNI GTAC 2 cut(s) 240, 321
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 6 cut(s) 368, 395, 440, 570, 734, 1026
Sau96I GGNCC 5 cut(s) 294, 373, 450, 455, 802
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 3 cut(s) 392, 638, 753
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 2 cut(s) 294, 802
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 3 cut(s) 400, 618, 1027
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 1 cut(s) 473
SspMI CTAG 3 cut(s) 405, 746, 1032
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 2 cut(s) 630, 689
TaaI ACNGT 3 cut(s) 331, 360, 698
TaiI ACGT 1 cut(s) 812
TaqI TCGA 5 cut(s) 44, 57, 134, 522, 1009
TasI AATT 3 cut(s) 400, 618, 1027
TfiI GAWTC 2 cut(s) 46, 586
Tru1I TTAA 6 cut(s) 368, 395, 440, 570, 734, 1026
Tru9I TTAA 6 cut(s) 368, 395, 440, 570, 734, 1026
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 3 cut(s) 74, 303, 889
Tsp45I GTSAC 3 cut(s) 74, 303, 889
TspDTI ATGAA 7 cut(s) 38, 275, 485, 567, 578, 595, 677
TspGWI ACGGA 2 cut(s) 305, 359
TspRI CASTG 1 cut(s) 79
Tth111I GACNNNGTC 1 cut(s) 914
VpaK11BI GGWCC 2 cut(s) 294, 802
XspI CTAG 3 cut(s) 405, 746, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.