AT5G35890
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005302
Physical Location & Seq
Reverse (-)
14025863 .. 14026726
864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35890.1

Sequence Viewer

Length: 864 bp
ATGTTGGCGGCGGTGTACGGCAGCGCTCCTCTTCCTAGAGGTTTCCTAGGGTTTCTCCTTTTGGGTGGGCCTCTTTTGGGCCTATTTGTTTATCTTCAGCCCATCCTTGGATTTGGTAGCCCATTTTCTCCACTAGTTTGGCCCAGGTCTGTTACTCTTAAATCTCTAATTAGCCCATTAGAATTGATATCCCGACTTAGCGCCTTAATTGGTTATGGACTCCGCTTAAGCCATTTGTCGATTTCAATGGTTTTGGTGTGTAATTTTATCTCTAGAACCCTGGCCAATTGTAATTCCTCAAGTGCTTCATCTTCTCATCAAAGCTTTAGGCTAATGGACTTGGTGTATCTAGGTTTTAGATATGCTATTAGATTAGAGAATAACGGCATTATGATCTCCTCCCTACGGAGAGGCGGTTACCGAAACTTCTTTAATCCTCTCTCCCCAAATCCCTTAAATATTGAATCCGAGCCATACTTGTCTAACATTTTTAAGATTGATATTCATGAAAGCAAGGATTTGAGAAGCTATGGCATTATGAGACCGGCTCTATGGAGCAGTGCTTACCAAATGCTTCTCAACTCTATACCTCTAAACCCACCGGGTGACAGAACCCACTCAACCCCTCTCCTTGTCGACGACCATTTCCTGCTTAATCTACCTGGGACAGCGAGAATCTCGACTTTGAGAATCTTTTCAATGTCACCTCATCTATTATGGACCGTGACCATCACTTCGTCCACCGCTCTGTTTGTGGATGACGTTTTGACAACCCGTGCTCTCACTGGTACCAGTCGGCTCCGTAGCATTGGCCCTCAAGTTTCATGGATCCTTTGTCGGTTTATCTTTGCTATCTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

287

Amino Acids

31.85

Weight (kDa)

10.01

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 788
AccB1I GGYRCC 1 cut(s) 788
AccBSI CCGCTC 1 cut(s) 746
AccI GTMKAC 1 cut(s) 636
AciI CCGC 5 cut(s) 8, 11, 223, 414, 744
AclWI GGATC 2 cut(s) 823, 836
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 2 cut(s) 17, 790
AfeI AGCGCT 1 cut(s) 25
AfiI CCNNNNNNNGG 3 cut(s) 77, 107, 405
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 246, 464, 699
AhlI ACTAGT 1 cut(s) 133
AjnI CCWGG 3 cut(s) 143, 279, 661
AluBI AGCT 2 cut(s) 324, 528
AluI AGCT 2 cut(s) 324, 528
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 2 cut(s) 823, 836
Aor51HI AGCGCT 1 cut(s) 25
AoxI GGCC 5 cut(s) 68, 79, 140, 282, 811
ApeKI GCWGC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
Asp700I GAANNNNTTC 1 cut(s) 694
Asp718I GGTACC 1 cut(s) 788
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 2 cut(s) 26, 203
AspS9I GGNCC 5 cut(s) 68, 79, 141, 720, 812
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 617, 696
AvaII GGWCC 1 cut(s) 720
AvrII CCTAGG 1 cut(s) 46
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 828
BanI GGYRCC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 110, 737
BceAI ACGGC 2 cut(s) 34, 400
BciT130I CCWGG 3 cut(s) 145, 281, 663
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 535
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 5 cut(s) 36, 47, 134, 273, 350
BfoI RGCGCY 2 cut(s) 27, 204
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 9, 22
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 2 cut(s) 10, 23
Bme1390I CCNGG 4 cut(s) 145, 281, 603, 663
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 5 cut(s) 68, 79, 141, 720, 812
BmiI GGNNCC 3 cut(s) 790, 800, 830
BmrFI CCNGG 4 cut(s) 145, 281, 603, 663
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpuEI CTTGAG 2 cut(s) 283, 801
BpuMI CCSGG 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 5 cut(s) 46, 106, 143, 279, 662
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 107, 405
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 790, 792
BseBI CCWGG 3 cut(s) 145, 281, 663
BseDI CCNNGG 5 cut(s) 46, 106, 143, 279, 662
BseGI GGATG 2 cut(s) 102, 763
BseLI CCNNNNNNNGG 3 cut(s) 77, 107, 405
BseNI ACTGG 2 cut(s) 790, 792
BseRI GAGGAG 2 cut(s) 18, 388
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 5 cut(s) 70, 81, 142, 284, 813
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 2 cut(s) 545, 602
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 3 cut(s) 77, 107, 405
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 679
BsnI GGCC 5 cut(s) 70, 81, 142, 284, 813
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 2 cut(s) 393, 828
BspACI CCGC 5 cut(s) 8, 11, 223, 414, 744
BspANI GGCC 5 cut(s) 70, 81, 142, 284, 813
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 3 cut(s) 790, 800, 830
BspPI GGATC 2 cut(s) 823, 836
BspT107I GGYRCC 1 cut(s) 788
BspTI CTTAAG 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 2 cut(s) 790, 792
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 5 cut(s) 46, 106, 143, 279, 662
BssMI GATC 2 cut(s) 393, 828
BssT1I CCWWGG 2 cut(s) 46, 106
Bst2UI CCWGG 3 cut(s) 145, 281, 663
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 197
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 2 cut(s) 102, 763
BstH2I RGCGCY 2 cut(s) 27, 204
BstHHI GCGC 2 cut(s) 26, 203
BstKTI GATC 2 cut(s) 396, 831
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 2 cut(s) 393, 828
BstNI CCWGG 3 cut(s) 145, 281, 663
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 4 cut(s) 143, 279, 601, 661
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 828
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 1 cut(s) 828
BsuRI GGCC 5 cut(s) 70, 81, 142, 284, 813
BtsCI GGATG 2 cut(s) 102, 763
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 565, 783
CciI TCATGA 1 cut(s) 505
CfoI GCGC 2 cut(s) 26, 203
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 5 cut(s) 68, 79, 141, 720, 812
Csp6I GTAC 2 cut(s) 16, 789
CviAII CATG 2 cut(s) 506, 825
CviQI GTAC 2 cut(s) 16, 789
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 395, 830
DpnII GATC 2 cut(s) 393, 828
DraIII CACNNNGTG 1 cut(s) 605
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 46, 106
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 720
Eco47III AGCGCT 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 143, 279, 661
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 46, 106
ErhI CCWWGG 2 cut(s) 46, 106
FaeI CATG 2 cut(s) 509, 828
FaqI GGGAC 1 cut(s) 679
FatI CATG 2 cut(s) 505, 824
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 9, 22
FokI GGATG 2 cut(s) 89, 770
Fsp4HI GCNGC 2 cut(s) 9, 22
FspBI CTAG 5 cut(s) 36, 47, 134, 273, 350
GlaI GCGC 2 cut(s) 25, 202
GluI GCNGC 2 cut(s) 9, 22
HaeII RGCGCY 2 cut(s) 27, 204
HaeIII GGCC 5 cut(s) 70, 81, 142, 284, 813
HapII CCGG 2 cut(s) 545, 602
HhaI GCGC 2 cut(s) 26, 203
Hin1II CATG 2 cut(s) 509, 828
Hin6I GCGC 2 cut(s) 24, 201
HinP1I GCGC 2 cut(s) 24, 201
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 4 cut(s) 219, 464, 675, 690
HpaII CCGG 2 cut(s) 545, 602
HphI GGTGA 2 cut(s) 617, 696
Hpy166II GTNNAC 3 cut(s) 16, 637, 741
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 4 cut(s) 192, 273, 506, 679
Hpy8I GTNNAC 3 cut(s) 16, 637, 741
Hpy99I CGWCG 1 cut(s) 641
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 1 cut(s) 762
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 2 cut(s) 509, 828
HspAI GCGC 2 cut(s) 24, 201
KpnI GGTACC 1 cut(s) 792
Kzo9I GATC 2 cut(s) 393, 828
LmnI GCTCC 3 cut(s) 31, 555, 804
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 5 cut(s) 36, 47, 134, 273, 350
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 5 cut(s) 151, 416, 605, 702, 724
MalI GATC 2 cut(s) 395, 830
MbiI CCGCTC 1 cut(s) 746
MboI GATC 2 cut(s) 393, 828
MboII GAAGA 3 cut(s) 23, 86, 303
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 6 cut(s) 168, 182, 207, 262, 286, 292
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 694
MscI TGGCCA 1 cut(s) 284
MseI TTAA 7 cut(s) 159, 206, 227, 432, 455, 492, 654
Msp20I TGGCCA 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 545, 602
MspR9I CCNGG 4 cut(s) 145, 281, 603, 663
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 3 cut(s) 145, 281, 663
NciI CCSGG 1 cut(s) 603
NdeII GATC 2 cut(s) 393, 828
NlaIII CATG 2 cut(s) 509, 828
NlaIV GGNNCC 3 cut(s) 790, 800, 830
NmuCI GTSAC 3 cut(s) 605, 702, 724
PagI TCATGA 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 464, 675, 690
PkrI GCNGC 2 cut(s) 10, 23
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 143, 279, 661
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 143, 279, 661
PspN4I GGNNCC 3 cut(s) 790, 800, 830
PspPI GGNCC 5 cut(s) 68, 79, 141, 720, 812
PsuI RGATCY 1 cut(s) 828
RsaI GTAC 2 cut(s) 17, 790
RsaNI GTAC 2 cut(s) 16, 789
SalI GTCGAC 1 cut(s) 635
SaqAI TTAA 7 cut(s) 159, 206, 227, 432, 455, 492, 654
SatI GCNGC 2 cut(s) 9, 22
Sau3AI GATC 2 cut(s) 393, 828
Sau96I GGNCC 5 cut(s) 68, 79, 141, 720, 812
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 4 cut(s) 145, 281, 603, 663
SduI GDGCHC 1 cut(s) 781
SetI ASST 9 cut(s) 43, 149, 326, 355, 530, 592, 664, 709, 765
SinI GGWCC 1 cut(s) 720
SmlI CTYRAG 3 cut(s) 226, 298, 816
SmoI CTYRAG 3 cut(s) 226, 298, 816
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 6 cut(s) 168, 182, 207, 262, 286, 292
SsiI CCGC 5 cut(s) 8, 11, 223, 414, 744
SspI AATATT 1 cut(s) 460
SspMI CTAG 5 cut(s) 36, 47, 134, 273, 350
StyD4I CCNGG 4 cut(s) 143, 279, 601, 661
StyI CCWWGG 2 cut(s) 46, 106
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 1 cut(s) 765
TaqI TCGA 3 cut(s) 239, 636, 680
TasI AATT 6 cut(s) 168, 182, 207, 262, 286, 292
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 3 cut(s) 464, 675, 690
Tru1I TTAA 7 cut(s) 159, 206, 227, 432, 455, 492, 654
Tru9I TTAA 7 cut(s) 159, 206, 227, 432, 455, 492, 654
TscAI CASTG 2 cut(s) 565, 790
TseFI GTSAC 3 cut(s) 605, 702, 724
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 3 cut(s) 605, 702, 724
TspDTI ATGAA 4 cut(s) 297, 494, 522, 813
TspGWI ACGGA 2 cut(s) 421, 791
TspRI CASTG 2 cut(s) 565, 790
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 720
XbaI TCTAGA 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 5 cut(s) 36, 47, 134, 273, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.