AT2G10955

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005302
Physical Location & Seq
Reverse (-)
4323589 .. 4324032
444 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G10955.1

Sequence Viewer

Length: 444 bp
ATGTCTGGCCTTTTCTTCATGTGGCAAACCGACTACAAGCTTTGTGTGGAATTCCTTAATCTCCTTGGTCTTCTTGGGAGAGAGGACCCACCTGTTCTGTTACGGTCTCGCATCAATCTTTCTAAGCCTCGACGATCCTCCTTCCTTTACCAAAACCTTGTTCGAACCTTTGCAAAAGCACTACTTGGTGTAGTACTTCTCGTCCCGACGAGATTCATGTCTTTGGCGCCCTTGTTAACGTTACTAAGTCTTTTGACAGTAACCATACTCTCATCCACTACTTTGTTCGTGGAAGATTTGTCAACAATCCTTGATCTTAAAAGTAACAAATTCCCTTCAAGTGTTTGGATTATAGCTCTCATGGAACCATTGTTGATGTACCTTATTTGTGTGTTAGCTTTTCTTCTTATGGTGTTGGGAATGCCTACCTTTGTTGTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142
Pfam Domains
Protein Families
BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

9.39

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AclI AACGTT 1 cut(s) 239
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 2 cut(s) 50, 329
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 2 cut(s) 195, 380
AgsI TTSAA 1 cut(s) 339
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 3 cut(s) 40, 356, 398
AluI AGCT 3 cut(s) 40, 356, 398
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 7
ApoI RAATTY 2 cut(s) 50, 329
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 230
BmcAI AGTACT 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 87, 228, 366
BmsI GCATC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 272
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 134, 313
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 87, 228, 366
BspPI GGATC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 2 cut(s) 134, 313
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 105, 259
BstACI GRCGYC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 123, 245
BstF5I GGATG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 137, 316
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 134, 313
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 272
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 194, 379
CviAII CATG 3 cut(s) 19, 217, 361
CviJI RGCY 5 cut(s) 9, 40, 127, 356, 398
CviKI_1 RGCY 5 cut(s) 9, 40, 127, 356, 398
CviQI GTAC 2 cut(s) 194, 379
DdeI CTNAG 2 cut(s) 123, 245
DinI GGCGCC 1 cut(s) 228
DpnI GATC 2 cut(s) 136, 315
DpnII GATC 2 cut(s) 134, 313
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 64
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 22, 220, 364
FaiI YATR 6 cut(s) 20, 218, 266, 353, 362, 410
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 18, 216, 360
FokI GGATG 1 cut(s) 259
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 9
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 3 cut(s) 22, 220, 364
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 237, 303
HindII GTYRAC 2 cut(s) 237, 303
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 213
HpaI GTTAAC 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 237, 303
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 237, 303
Hpy99I CGWCG 2 cut(s) 135, 211
HpyAV CCTTC 2 cut(s) 151, 345
HpyCH4III ACNGT 2 cut(s) 105, 259
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 123, 245
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 3 cut(s) 22, 220, 364
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 134, 313
LpnPI CCDG 1 cut(s) 105
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 4 cut(s) 99, 240, 259, 323
MalI GATC 2 cut(s) 136, 315
MboI GATC 2 cut(s) 134, 313
MboII GAAGA 4 cut(s) 7, 62, 305, 395
MluCI AATT 2 cut(s) 50, 329
Mly113I GGCGCC 1 cut(s) 227
MnlI CCTC 3 cut(s) 76, 138, 148
MseI TTAA 4 cut(s) 57, 236, 318, 442
Mva1269I GAATGC 1 cut(s) 426
NarI GGCGCC 1 cut(s) 227
NdeII GATC 2 cut(s) 134, 313
NlaIII CATG 3 cut(s) 22, 220, 364
NlaIV GGNNCC 3 cut(s) 87, 228, 366
NspV TTCGAA 1 cut(s) 163
PctI GAATGC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 213
PluTI GGCGCC 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 85
PspN4I GGNNCC 3 cut(s) 87, 228, 366
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 195, 380
RsaNI GTAC 2 cut(s) 194, 379
SaqAI TTAA 4 cut(s) 57, 236, 318, 442
Sau3AI GATC 2 cut(s) 134, 313
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 195
SetI ASST 9 cut(s) 42, 94, 159, 170, 242, 358, 384, 400, 431
SfaNI GCATC 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 1 cut(s) 85
Sse9I AATT 2 cut(s) 50, 329
SspDI GGCGCC 1 cut(s) 226
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 105, 259
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 130, 163
TasI AATT 2 cut(s) 50, 329
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 4 cut(s) 57, 236, 318, 442
Tru9I TTAA 4 cut(s) 57, 236, 318, 442
TspDTI ATGAA 2 cut(s) 7, 205
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 50, 329
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.