AT5G26622

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005302
Physical Location & Seq
Reverse (-)
9355953 .. 9357449
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26622.1

Sequence Viewer

Length: 888 bp
ATGGAGTCAATGGTTTGTGGACGCCACTTGATCTCATATCATACCTCTTTGCTCTGTTTGCTCAACATTTATCTGAAAACCTGCCCTTTAGAATCACCTAGAAGTTCTATCAAAGTTTCCCAAAGCTTGAAGAAGACTCTCTCGGATAGCTTACATTATCACGGCCGTTTGCAATGGTTGAGGCAGCGCGGCACTATGATCTCGGCTCCAAGGAGTGGGGATTACCGCTGCTTCCTCAACCATGTATCATCTTATCCTTTGCTCACCGTGTTCTCTCTTGTACAATTTGCCATGGTTCATTCGGCTATATTTGTGAAGCTCAGGTTTATGTTTTGTCTCTATGTGTTAGACCGACTACAAAATGTGTGTGGATTCCTTAATCTCCATGGCTCGTTTCATGTGAGAGAGGACCCACCGATTTTGTTACAGCTTATCACTTATCTTCTACAAACCCTTTGTGTAGCTTCTTCATATACATTGAGTCATGAGTTTGCTCTTTTGAAGATCTTTGGAATATCGTCCTTAACCCATCCATGTGACATCAACATCTTTGTCCAAACCTCTGCTAAAGCTCTACGTTGTGTAGTTCTCCTTGTGCAGACAAGAAGATTGCCGTTAGCCCCTTCATCAACGCCATTCCGTCTCTTGACATTGGCAATTCGTTCATCCAATGACTTGTTCTTGGAAGAAGCCTCGACAACCTTTGACCTCACATGCTCCACAAAGCTTCTTACCTTTTGGTTCAAAGCTCTCAAGGATCACTTGCCGAGTACCTCTTGTTACCTTGTTATTTTCCTTGTATTAACTTTGGGGTATGCCCTTTATTATTGTGCTTTCAACTTTGGAATTTCAGATTTCTCTTATCTTTATATTTGTTATCTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142
Pfam Domains
Protein Families
BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

295

Amino Acids

33.72

Weight (kDa)

9.02

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 215
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 189, 226
AclWI GGATC 1 cut(s) 765
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 846
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 282, 772
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 4 cut(s) 130, 502, 745, 838
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 8 cut(s) 126, 150, 319, 430, 464, 572, 727, 749
AluI AGCT 8 cut(s) 126, 150, 319, 430, 464, 572, 727, 749
Alw26I GTCTC 2 cut(s) 341, 647
AlwI GGATC 1 cut(s) 765
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 184, 228
ApoI RAATTY 1 cut(s) 846
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 87, 256
AvaII GGWCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 196, 215
BccI CCATC 1 cut(s) 537
BceAI ACGGC 3 cut(s) 150, 178, 598
BcoDI GTCTC 2 cut(s) 341, 647
BfaI CTAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 89
BglII AGATCT 1 cut(s) 504
BisI GCNGC 3 cut(s) 185, 190, 229
BlsI GCNGC 3 cut(s) 186, 191, 230
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 207, 411
BpiI GAAGAC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 737
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 209, 291, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 209, 291, 385
BseGI GGATG 2 cut(s) 529, 665
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 334
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 196, 215
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 341, 647
BsmBI CGTCTC 1 cut(s) 647
BsnI GGCC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 4 cut(s) 30, 198, 504, 757
Bsp19I CCATGG 2 cut(s) 291, 385
BspACI CCGC 2 cut(s) 189, 226
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 207, 411
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 209, 291, 385
BssMI GATC 4 cut(s) 30, 198, 504, 757
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 3 cut(s) 209, 291, 385
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 2 cut(s) 291, 385
BstF5I GGATG 2 cut(s) 529, 665
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 4 cut(s) 33, 201, 507, 760
BstMAI GTCTC 2 cut(s) 341, 647
BstMBI GATC 4 cut(s) 30, 198, 504, 757
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 717
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 196, 215
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
BstZI CGGCCG 1 cut(s) 163
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 291, 385
BtsCI GGATG 2 cut(s) 529, 665
BveI ACCTGC 1 cut(s) 89
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 281, 771
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 7 cut(s) 242, 292, 386, 398, 485, 534, 714
CviQI GTAC 2 cut(s) 281, 771
DdeI CTNAG 1 cut(s) 320
DpnI GATC 4 cut(s) 32, 200, 506, 759
DpnII GATC 4 cut(s) 30, 198, 504, 757
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 209, 291, 385
Eco47I GGWCC 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 209, 291, 385
ErhI CCWWGG 3 cut(s) 209, 291, 385
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 7 cut(s) 245, 295, 389, 401, 488, 537, 717
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FatI CATG 7 cut(s) 241, 291, 385, 397, 484, 533, 713
Fnu4HI GCNGC 3 cut(s) 185, 190, 229
FokI GGATG 2 cut(s) 516, 652
Fsp4HI GCNGC 3 cut(s) 185, 190, 229
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 188
GluI GCNGC 3 cut(s) 185, 190, 229
HaeIII GGCC 1 cut(s) 165
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 7 cut(s) 245, 295, 389, 401, 488, 537, 717
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 124, 725
HinfI GANTC 5 cut(s) 5, 92, 136, 372, 481
HphI GGTGA 2 cut(s) 87, 256
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 75, 145, 853
Hpy188III TCNNGA 2 cut(s) 485, 646
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 633
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 2 cut(s) 172, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 577
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 7 cut(s) 245, 295, 389, 401, 488, 537, 717
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 30, 198, 504, 757
LmnI GCTCC 2 cut(s) 211, 722
LpnPI CCDG 2 cut(s) 94, 307
Lsp1109I GCAGC 2 cut(s) 196, 215
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 3 cut(s) 423, 536, 779
MalI GATC 4 cut(s) 32, 200, 506, 759
MboI GATC 4 cut(s) 30, 198, 504, 757
MboII GAAGA 7 cut(s) 142, 145, 434, 459, 514, 618, 698
MflI RGATCY 1 cut(s) 504
MluCI AATT 3 cut(s) 284, 657, 846
MlyI GAGTC 3 cut(s) 14, 130, 490
MnlI CCTC 8 cut(s) 55, 174, 245, 400, 571, 703, 719, 784
MseI TTAA 3 cut(s) 378, 524, 803
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 228
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 2 cut(s) 291, 385
NdeII GATC 4 cut(s) 30, 198, 504, 757
NlaIII CATG 7 cut(s) 245, 295, 389, 401, 488, 537, 717
NlaIV GGNNCC 2 cut(s) 207, 411
NmeAIII GCCGAG 2 cut(s) 182, 792
NmuCI GTSAC 1 cut(s) 536
NspI RCATGY 1 cut(s) 717
PagI TCATGA 1 cut(s) 484
PfeI GAWTC 2 cut(s) 92, 372
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 3 cut(s) 186, 191, 230
PleI GAGTC 3 cut(s) 13, 130, 489
PpsI GAGTC 3 cut(s) 13, 130, 489
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 207, 411
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 1 cut(s) 504
RsaI GTAC 2 cut(s) 282, 772
RsaNI GTAC 2 cut(s) 281, 771
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 3 cut(s) 378, 524, 803
SatI GCNGC 3 cut(s) 185, 190, 229
Sau3AI GATC 4 cut(s) 30, 198, 504, 757
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 3 cut(s) 14, 130, 490
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 284, 657, 846
SsiI CCGC 2 cut(s) 189, 226
SspMI CTAG 1 cut(s) 99
StyI CCWWGG 3 cut(s) 209, 291, 385
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 580
TaqI TCGA 1 cut(s) 695
TaqII GACCGA 1 cut(s) 366
TasI AATT 3 cut(s) 284, 657, 846
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 92, 372
Tru1I TTAA 3 cut(s) 378, 524, 803
Tru9I TTAA 3 cut(s) 378, 524, 803
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 2 cut(s) 184, 228
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 5 cut(s) 287, 386, 459, 615, 654
TspGWI ACGGA 1 cut(s) 629
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 846
XceI RCATGY 1 cut(s) 717
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.