AT5G01080
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005302
Physical Location & Seq
Reverse (-)
28532 .. 29086
555 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01080.1

Sequence Viewer

Length: 555 bp
ATGTTGCTTTGTTGGTACAATTATATCTCGAGAACCCTGCCTTTCGAAGCACCTAGAGAGATTTTTCATAAAACCAAAAGAGTGAAGAAGAACGGCACTATGATCCCGTCTCCACAGAGCGGTGATTACCGTAGCTTTTTCAACTCTTCATCCCCGCTTCCTTTGATTATCGAGCTCGTTCATGTGCAAATCATCAAGTTCAAGGATAGTTCTCAAATTTTTAAAAGCTTGAAGAAGAACGGCATTATAACCGCATTTCCATGGAAAAGTGGTTACCGTAGTATTCTCAATCTTTTTTATCCAACAGCCTCCTCTTTGGAGTTTGTTTCTAAAAGCTTGTATGCATTGTTTGCTCGAGCCGTCTATGACCACCCGTTGGTCGAGGATTTCGCGAAGCTCGTCTTCATGGTCGAATCCGCTATAGTTTCAACAGATTTTTCAACCATTGCAAACTTTTTAAAAGTGAACATCCCTTTGGAAAACTCATGGAACTTGTATCTTTCTTTCTGTTGTATTATCGTAGCTTGTATCAACTTTCCTCTCTTGAGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

184

Amino Acids

21.14

Weight (kDa)

9.39

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 1 cut(s) 392
AciI CCGC 4 cut(s) 120, 155, 252, 417
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 119, 376
AgsI TTSAA 5 cut(s) 142, 202, 232, 429, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 6 cut(s) 135, 175, 228, 336, 397, 524
AluI AGCT 6 cut(s) 135, 175, 228, 336, 397, 524
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 97
Ama87I CYCGRG 2 cut(s) 28, 354
AoxI GGCC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 45
AvaI CYCGRG 2 cut(s) 28, 354
BanII GRGCYC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 177
BceAI ACGGC 3 cut(s) 109, 256, 344
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 420
BmeT110I CYCGRG 2 cut(s) 28, 354
BpiI GAAGAC 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 376
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 149, 468
BseLI CCNNNNNNNGG 2 cut(s) 119, 376
BseMI GCAATG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 28, 354
BslI CCNNNNNNNGG 2 cut(s) 119, 376
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 550
BsoBI CYCGRG 2 cut(s) 28, 354
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 260
Bsp68I TCGCGA 1 cut(s) 392
BspACI CCGC 4 cut(s) 120, 155, 252, 417
BspANI GGCC 1 cut(s) 550
BspFNI CGCG 1 cut(s) 392
BspPI GGATC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 45
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 131, 278
Bst6I CTCTTC 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 149, 468
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 260
BtsCI GGATG 2 cut(s) 149, 468
BtuMI TCGCGA 1 cut(s) 392
Csp6I GTAC 1 cut(s) 16
CviAII CATG 4 cut(s) 182, 261, 406, 486
CviJI RGCY 9 cut(s) 135, 175, 228, 308, 336, 359, 397, 524, 550
CviKI_1 RGCY 9 cut(s) 135, 175, 228, 308, 336, 359, 397, 524, 550
CviQI GTAC 1 cut(s) 16
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
DraI TTTAAA 2 cut(s) 223, 459
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 28, 354
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 260
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 4 cut(s) 185, 264, 409, 489
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 4 cut(s) 181, 260, 405, 485
FauI CCCGC 1 cut(s) 162
FokI GGATG 2 cut(s) 136, 455
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 550
Hin1II CATG 4 cut(s) 185, 264, 409, 489
HindIII AAGCTT 2 cut(s) 226, 334
HinfI GANTC 1 cut(s) 413
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 466
Hpy188III TCNNGA 4 cut(s) 28, 30, 391, 544
Hpy8I GTNNAC 1 cut(s) 466
HpyCH4III ACNGT 2 cut(s) 131, 278
HpyCH4V TGCA 3 cut(s) 187, 344, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
Hsp92II CATG 4 cut(s) 185, 264, 409, 489
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 50
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 104
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 102
MboII GAAGA 6 cut(s) 97, 100, 138, 244, 247, 394
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 19, 216
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 5 cut(s) 319, 322, 376, 540, 549
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 3 cut(s) 222, 458, 553
MslI CAYNNNNRTG 1 cut(s) 259
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 350
NcoI CCATGG 1 cut(s) 260
NdeII GATC 1 cut(s) 102
NlaIII CATG 4 cut(s) 185, 264, 409, 489
NruI TCGCGA 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 346
NspV TTCGAA 1 cut(s) 45
PaeR7I CTCGAG 2 cut(s) 28, 354
PceI AGGCCT 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 376
PsiI TTATAA 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 354
RruI TCGCGA 1 cut(s) 392
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 259
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 222, 458, 553
Sau3AI GATC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 177
SetI ASST 7 cut(s) 55, 137, 177, 230, 338, 399, 526
SfcI CTRYAG 1 cut(s) 420
Sfr274I CTCGAG 2 cut(s) 28, 354
SfuI TTCGAA 1 cut(s) 45
SlaI CTCGAG 2 cut(s) 28, 354
SmiMI CAYNNNNRTG 1 cut(s) 259
SmlI CTYRAG 3 cut(s) 28, 354, 544
SmoI CTYRAG 3 cut(s) 28, 354, 544
Sse9I AATT 2 cut(s) 19, 216
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 4 cut(s) 120, 155, 252, 417
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 550
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 131, 278
TaqI TCGA 6 cut(s) 29, 45, 171, 355, 381, 411
TasI AATT 2 cut(s) 19, 216
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 3 cut(s) 222, 458, 553
Tru9I TTAA 3 cut(s) 222, 458, 553
TspDTI ATGAA 4 cut(s) 56, 138, 170, 394
Van91I CCANNNNNTGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 216
XhoI CTCGAG 2 cut(s) 28, 354
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.