AT3G43580

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005302
Physical Location & Seq
Forward (+)
15502016 .. 15503638
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43580.1

Sequence Viewer

Length: 615 bp
ATGCCCTTAAAACCGCTTAGGCACATTATCCATGAAGTTAATAGATTGAAGAAGAACGACATTATCATCCCATTTCTAAGGAGCGGTGATTACCGAAGCTTCTTCAATCTGTCCTTAACCTTTACTCCGAATCGAATCCAGCTCCCACATCAAGAATACTATCTAAGATTGTCGAGGATGCACGACGTTGCCTCCTTTTGCGCAGAACTCATATTTGGCCTTAAGGGTCTTTGGCGCAATAGCTGCTTCACCTTGGAGGGAATTTCAGCTCTGCCATCCTCCTTATCGAGAATTGCTTCAAGTCTTTCCGTTTTCTCCAAGTGGTTCACGCCGGAAACCATTGAAACTAAAGAACATTTTTCAAAGTCACGAATTCTTTTGATAGTGACTATTGTTAAGCTCCCCGAATTTTTTGCCAAAGTGTCTTTGACACACCATGATTTCGCTTGTGATATGTTGCGCAGCTCCTGTCTCCGAGTTCTTATGGATTTATCTCCTATGTTTAATGCTCTCTCAACCTTCCTAGCTACCCTTGATGTAATCTTATGCTTAATCTGCTTTATGTACCCAACCATTCAGTTGATGATCTGTACTCTATATCCTTCTTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

204

Amino Acids

23.53

Weight (kDa)

9.03

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 202, 461
AccBSI CCGCTC 1 cut(s) 84
AciI CCGC 2 cut(s) 14, 84
AcsI RAATTY 3 cut(s) 261, 372, 407
AfaI GTAC 2 cut(s) 566, 592
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 5 cut(s) 49, 106, 300, 344, 363
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 7 cut(s) 99, 142, 243, 269, 400, 465, 527
AluI AGCT 7 cut(s) 99, 142, 243, 269, 400, 465, 527
Alw26I GTCTC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 468
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 243, 462
ApoI RAATTY 3 cut(s) 261, 372, 407
Asp700I GAANNNNTTC 1 cut(s) 295
AspLEI GCGC 3 cut(s) 203, 237, 462
AsuHPI GGTGA 2 cut(s) 98, 241
BbvI GCAGC 2 cut(s) 230, 474
BccI CCATC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 524
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 244, 463
BlsI GCNGC 2 cut(s) 245, 464
BmsI GCATC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 176, 206
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 66, 183, 275
BseXI GCAGC 2 cut(s) 230, 474
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 585
BspACI CCGC 2 cut(s) 14, 84
BspANI GGCC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 17, 77, 164
BstF5I GGATG 3 cut(s) 66, 183, 275
BstHHI GCGC 3 cut(s) 203, 237, 462
BstKTI GATC 1 cut(s) 588
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 1 cut(s) 585
BstMWI GCNNNNNNNGC 2 cut(s) 243, 555
BstV1I GCAGC 2 cut(s) 230, 474
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 66, 183, 275
CaiI CAGNNNCTG 1 cut(s) 468
CfoI GCGC 3 cut(s) 203, 237, 462
Csp6I GTAC 2 cut(s) 565, 591
CviAII CATG 2 cut(s) 32, 437
CviJI RGCY 8 cut(s) 99, 142, 219, 243, 269, 400, 465, 527
CviKI_1 RGCY 8 cut(s) 99, 142, 219, 243, 269, 400, 465, 527
CviQI GTAC 2 cut(s) 565, 591
DdeI CTNAG 3 cut(s) 17, 77, 164
DpnI GATC 1 cut(s) 587
DpnII GATC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 35, 440
FaiI YATR 9 cut(s) 33, 212, 438, 455, 485, 500, 547, 563, 598
FatI CATG 2 cut(s) 31, 436
Fnu4HI GCNGC 2 cut(s) 244, 463
FokI GGATG 3 cut(s) 53, 190, 262
Fsp4HI GCNGC 2 cut(s) 244, 463
FspBI CTAG 1 cut(s) 524
FspI TGCGCA 2 cut(s) 202, 461
GlaI GCGC 3 cut(s) 202, 236, 461
GluI GCNGC 2 cut(s) 244, 463
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 332
HhaI GCGC 3 cut(s) 203, 237, 462
Hin1II CATG 2 cut(s) 35, 440
Hin6I GCGC 3 cut(s) 201, 235, 460
HinP1I GCGC 3 cut(s) 201, 235, 460
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 2 cut(s) 130, 135
HpaII CCGG 1 cut(s) 332
HphI GGTGA 2 cut(s) 98, 241
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 129, 476
Hpy188III TCNNGA 3 cut(s) 152, 288, 369
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 529, 612
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 555
HpyF3I CTNAG 3 cut(s) 17, 77, 164
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 35, 440
HspAI GCGC 3 cut(s) 201, 235, 460
Kzo9I GATC 1 cut(s) 585
LmnI GCTCC 4 cut(s) 81, 147, 405, 470
LpnPI CCDG 3 cut(s) 152, 345, 481
Lsp1109I GCAGC 2 cut(s) 230, 474
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 366, 385
MalI GATC 1 cut(s) 587
MbiI CCGCTC 1 cut(s) 84
MboI GATC 1 cut(s) 585
MboII GAAGA 3 cut(s) 61, 64, 94
MluCI AATT 4 cut(s) 261, 291, 372, 407
MnlI CCTC 4 cut(s) 168, 202, 250, 289
MroXI GAANNNNTTC 1 cut(s) 295
MseI TTAA 8 cut(s) 8, 39, 116, 222, 396, 504, 551, 613
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 243, 555
NdeII GATC 1 cut(s) 585
NlaIII CATG 2 cut(s) 35, 440
NmuCI GTSAC 2 cut(s) 366, 385
NsbI TGCGCA 2 cut(s) 202, 461
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 130, 135
PkrI GCNGC 2 cut(s) 245, 464
PstNI CAGNNNCTG 1 cut(s) 468
RsaI GTAC 2 cut(s) 566, 592
RsaNI GTAC 2 cut(s) 565, 591
SaqAI TTAA 8 cut(s) 8, 39, 116, 222, 396, 504, 551, 613
SatI GCNGC 2 cut(s) 244, 463
Sau3AI GATC 1 cut(s) 585
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 261, 291, 372, 407
SsiI CCGC 2 cut(s) 14, 84
SspMI CTAG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 252
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 133, 173, 287
TasI AATT 4 cut(s) 261, 291, 372, 407
TatI WGTACW 1 cut(s) 590
TfiI GAWTC 2 cut(s) 130, 135
Tru1I TTAA 8 cut(s) 8, 39, 116, 222, 396, 504, 551, 613
Tru9I TTAA 8 cut(s) 8, 39, 116, 222, 396, 504, 551, 613
TseFI GTSAC 2 cut(s) 366, 385
TseI GCWGC 2 cut(s) 243, 462
Tsp45I GTSAC 2 cut(s) 366, 385
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 221
XapI RAATTY 3 cut(s) 261, 372, 407
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.