AT2G11626

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005302
Physical Location & Seq
Forward (+)
4661458 .. 4662451
994 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G11626.1

Sequence Viewer

Length: 729 bp
ATGGCCCAACTTTCTCTTTTGATTGGCCCAGGTCTGTTCTTTATTCCCCTTTACCAATTTCAGTCTGATTGTTGCTCTGTTTCTCTGTTCTGTGTGGCCAAGGCGTCCACCAGAGAGATTTACTTGTTGATCTCCTTTTGGCAAGGTAACTTTTGTCCTGGATATTCTCGGGTTTCTTACCTTAAGCCGTCAACCGACCTTAAGCCCATTACAACCTCCGTTACCTCATCGTGTCGGATCATGCTCTCATATAGAGCTACTCGAACTTTCCTTTGCGATCCCGAATTGTATTCACAGCCTCTGTTCAGAATTGGAAATATTGGGTTTAACCACCACTCCAAAAGCCTCGGATTGAAGAAGACCGACTTTCACTGGAGTTTGTTCAATCCTTCATCTCCATTCCCTCTCAATCTGAAGTTTCATCAAGTGCTAACCAACGACTTTAAGGATCCTCTTCATGAAAATCGACGATGGAAGAAGAGCGGCATTATGATCCCGCCTCCAAGGAGCGATCTCCCTATTGAATTTACAAGATTGCAGAAGAAGGGCATTATGATCCCGCATCAAACGAGCGGATATTCAACCCTTTGTCCCAATGTCCTCGCTGCGTTTTGCGTCGACGAACACAGAGGTACAGGACTCTTTCTCAACGTCATTTTATCATTGTTTGATAGTGACTATCTCATAATTCTCCGACTTGTTCGTGGACGTGTCTTTGACACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.62

Weight (kDa)

9.33

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 483, 573
AccI GTMKAC 1 cut(s) 618
AciI CCGC 4 cut(s) 483, 497, 560, 573
AclWI GGATC 6 cut(s) 245, 272, 443, 456, 487, 550
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 634
AflII CTTAAG 2 cut(s) 182, 200
AflIII ACRYGT 1 cut(s) 709
AgsI TTSAA 4 cut(s) 355, 385, 524, 582
AjiI CACGTC 1 cut(s) 710
AjnI CCWGG 2 cut(s) 28, 157
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 6 cut(s) 245, 272, 443, 456, 487, 550
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 3 cut(s) 3, 25, 96
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 524
AspS9I GGNCC 2 cut(s) 4, 26
AvaI CYCGRG 1 cut(s) 168
BalI TGGCCA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 592
BccI CCATC 1 cut(s) 465
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 30, 159
BfrI CTTAAG 2 cut(s) 182, 200
BisI GCNGC 2 cut(s) 484, 606
BlsI GCNGC 2 cut(s) 485, 607
Bme1390I CCNGG 2 cut(s) 30, 159
BmeT110I CYCGRG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 4, 26
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 2 cut(s) 30, 159
BmsI GCATC 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 4 cut(s) 28, 99, 346, 503
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 30, 159
BseDI CCNNGG 4 cut(s) 28, 99, 346, 503
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 592
BshFI GGCC 3 cut(s) 5, 27, 98
BsiHKCI CYCGRG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 3 cut(s) 5, 27, 98
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
BspACI CCGC 4 cut(s) 483, 497, 560, 573
BspANI GGCC 3 cut(s) 5, 27, 98
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 6 cut(s) 245, 272, 443, 456, 487, 550
BspQI GCTCTTC 1 cut(s) 473
BspTI CTTAAG 2 cut(s) 182, 200
BsrBI CCGCTC 2 cut(s) 483, 573
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 28, 99, 346, 503
BssMI GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 99, 503
Bst2UI CCWGG 2 cut(s) 30, 159
Bst6I CTCTTC 2 cut(s) 459, 473
BstACI GRCGYC 1 cut(s) 104
BstAFI CTTAAG 2 cut(s) 182, 200
BstKTI GATC 7 cut(s) 132, 240, 280, 451, 495, 514, 558
BstMBI GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
BstNI CCWGG 2 cut(s) 30, 159
BstSCI CCNGG 2 cut(s) 28, 157
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 3 cut(s) 5, 27, 98
BtrI CACGTC 1 cut(s) 710
BtsIMutI CAGTG 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 301
CciI TCATGA 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 4, 26
CseI GACGC 2 cut(s) 93, 604
Csp6I GTAC 1 cut(s) 633
CviAII CATG 2 cut(s) 241, 458
CviJI RGCY 8 cut(s) 5, 27, 98, 187, 205, 257, 298, 345
CviKI_1 RGCY 8 cut(s) 5, 27, 98, 187, 205, 257, 298, 345
CviQI GTAC 1 cut(s) 633
DpnI GATC 7 cut(s) 131, 239, 279, 450, 494, 513, 557
DpnII GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 459, 473
EarI CTCTTC 2 cut(s) 459, 473
Eco130I CCWWGG 2 cut(s) 99, 503
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 28, 157
EcoT14I CCWWGG 2 cut(s) 99, 503
ErhI CCWWGG 2 cut(s) 99, 503
FaeI CATG 2 cut(s) 244, 461
FaiI YATR 7 cut(s) 242, 250, 252, 459, 491, 554, 686
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 576
FatI CATG 2 cut(s) 240, 457
FauI CCCGC 2 cut(s) 504, 567
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 484, 606
Fsp4HI GCNGC 2 cut(s) 484, 606
GluI GCNGC 2 cut(s) 484, 606
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 3 cut(s) 5, 27, 98
HgaI GACGC 2 cut(s) 93, 604
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 244, 461
HincII GTYRAC 2 cut(s) 192, 619
HindII GTYRAC 2 cut(s) 192, 619
HinfI GANTC 1 cut(s) 639
Hpy166II GTNNAC 4 cut(s) 108, 192, 619, 707
Hpy188I TCNGA 6 cut(s) 67, 237, 308, 350, 414, 695
Hpy188III TCNNGA 2 cut(s) 281, 458
Hpy8I GTNNAC 4 cut(s) 108, 192, 619, 707
Hpy99I CGWCG 3 cut(s) 471, 620, 623
HpyAV CCTTC 2 cut(s) 399, 538
HpyCH4IV ACGT 2 cut(s) 651, 709
HpyCH4V TGCA 1 cut(s) 538
HpySE526I ACGT 2 cut(s) 651, 709
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 244, 461
Kzo9I GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 1 cut(s) 507
LpnPI CCDG 7 cut(s) 15, 42, 124, 144, 171, 358, 621
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 1 cut(s) 571
MaeII ACGT 2 cut(s) 651, 709
MaeIII GTNAC 3 cut(s) 146, 220, 674
MalI GATC 7 cut(s) 131, 239, 279, 450, 494, 513, 557
MbiI CCGCTC 2 cut(s) 483, 573
MboI GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
MboII GAAGA 6 cut(s) 367, 370, 446, 487, 490, 553
MflI RGATCY 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 5 cut(s) 56, 284, 309, 524, 687
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 2 cut(s) 215, 718
MnlI CCTC 9 cut(s) 226, 235, 309, 356, 414, 462, 510, 611, 623
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 4 cut(s) 183, 201, 327, 444
Msp20I TGGCCA 1 cut(s) 98
MspCI CTTAAG 2 cut(s) 182, 200
MspR9I CCNGG 2 cut(s) 30, 159
MvaI CCWGG 2 cut(s) 30, 159
NdeII GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
NlaIII CATG 2 cut(s) 244, 461
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 674
PagI TCATGA 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 485, 607
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 28, 157
PspGI CCWGG 2 cut(s) 28, 157
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 4, 26
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
SalI GTCGAC 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 4 cut(s) 183, 201, 327, 444
SatI GCNGC 2 cut(s) 484, 606
Sau3AI GATC 7 cut(s) 129, 237, 277, 448, 492, 511, 555
Sau96I GGNCC 2 cut(s) 4, 26
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 2 cut(s) 30, 159
SfaNI GCATC 1 cut(s) 571
SgrDI CGTCGACG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 182, 200
SmoI CTYRAG 2 cut(s) 182, 200
Sse9I AATT 5 cut(s) 56, 284, 309, 524, 687
SsiI CCGC 4 cut(s) 483, 497, 560, 573
SspI AATATT 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 28, 157
StyI CCWWGG 2 cut(s) 99, 503
TaiI ACGT 2 cut(s) 654, 712
TaqI TCGA 3 cut(s) 262, 466, 618
TaqII GACCGA 1 cut(s) 377
TasI AATT 5 cut(s) 56, 284, 309, 524, 687
TauI GCSGC 1 cut(s) 486
Tru1I TTAA 4 cut(s) 183, 201, 327, 444
Tru9I TTAA 4 cut(s) 183, 201, 327, 444
TscAI CASTG 1 cut(s) 377
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 4 cut(s) 381, 410, 446, 474
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 377
Vha464I CTTAAG 2 cut(s) 182, 200
XapI RAATTY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.