Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

16266553 .. 16268945

Gene Structure 2393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCGTTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGATCAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 ko04130 ko04146 map03010 map04130 map04146

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

389

Amino Acids

44.56

Weight (kDa)

10.18

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	1 - 370	2.4e-200	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	1 cut(s)	1095
AclWI	GGATC	4 cut(s)	186, 199, 544, 610
AfaI	GTAC	5 cut(s)	398, 467, 568, 835, 877
AfiI	CCNNNNNNNGG	4 cut(s)	32, 487, 938, 953
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	307, 523, 626
AhdI	GACNNNNNGTC	1 cut(s)	1053
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	7 cut(s)	65, 134, 152, 199, 448, 629, 841
AluI	AGCT	7 cut(s)	65, 134, 152, 199, 448, 629, 841
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	9, 206, 233
AlwI	GGATC	4 cut(s)	186, 199, 544, 610
Asp700I	GAANNNNTTC	2 cut(s)	92, 386
Asp718I	GGTACC	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	1001
AsuHPI	GGTGA	2 cut(s)	97, 821
AvaII	GGWCC	1 cut(s)	1001
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	566
BarI	GAAGNNNNNNTAC	2 cut(s)	956, 988
BbsI	GAAGAC	3 cut(s)	287, 625, 713
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	4 cut(s)	239, 416, 538, 834
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	9, 206, 233
BfaI	CTAG	3 cut(s)	288, 783, 804
BfmI	CTRYAG	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	253
BlpI	GCTNAGC	2 cut(s)	402, 444
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	1001
BmeRI	GACNNNNNGTC	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	1001
BmiI	GGNNCC	3 cut(s)	193, 568, 1003
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	2 cut(s)	373, 402
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	2 cut(s)	373, 402
BpiI	GAAGAC	3 cut(s)	287, 625, 713
Bpu1102I	GCTNAGC	2 cut(s)	402, 444
BpuEI	CTTGAG	3 cut(s)	470, 1064, 1154
BsaBI	GATNNNNATC	3 cut(s)	548, 554, 656
BsaJI	CCNNGG	3 cut(s)	53, 672, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	1082, 1112
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 487, 938, 953
Bse1I	ACTGG	2 cut(s)	368, 397
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	3 cut(s)	548, 554, 656
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	53, 672, 1062
BseGI	GGATG	7 cut(s)	109, 427, 477, 649, 775, 928, 973
BseJI	GATNNNNATC	3 cut(s)	548, 554, 656
BseLI	CCNNNNNNNGG	4 cut(s)	32, 487, 938, 953
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	7 cut(s)	458, 512, 828, 870, 906, 1039, 1058
BseNI	ACTGG	2 cut(s)	368, 397
BseRI	GAGGAG	2 cut(s)	350, 1082
BseSI	GKGCMC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	4 cut(s)	32, 487, 938, 953
BsmAI	GTCTC	3 cut(s)	9, 206, 233
BsmFI	GGGAC	1 cut(s)	987
Bsp1286I	GDGCHC	2 cut(s)	24, 322
Bsp143I	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
Bsp1720I	GCTNAGC	2 cut(s)	402, 444
BspACI	CCGC	1 cut(s)	1095
BspCNI	CTCAG	7 cut(s)	457, 511, 829, 871, 907, 1038, 1057
BspLI	GGNNCC	3 cut(s)	193, 568, 1003
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	4 cut(s)	186, 199, 544, 610
BspT107I	GGYRCC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	368, 397
BssECI	CCNNGG	3 cut(s)	53, 672, 1062
BssMI	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
BssT1I	CCWWGG	3 cut(s)	53, 672, 1062
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	53, 1004
BstEII	GGTNACC	1 cut(s)	821
BstF5I	GGATG	7 cut(s)	109, 427, 477, 649, 775, 928, 973
BstKTI	GATC	6 cut(s)	194, 504, 552, 558, 618, 1074
BstMAI	GTCTC	3 cut(s)	9, 206, 233
BstMBI	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	322
BstV2I	GAAGAC	3 cut(s)	287, 625, 713
BstX2I	RGATCY	3 cut(s)	191, 549, 615
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	3 cut(s)	191, 549, 615
Bsu36I	CCTNAGG	1 cut(s)	99
BtsCI	GGATG	7 cut(s)	109, 427, 477, 649, 775, 928, 973
BtsIMutI	CAGTG	4 cut(s)	309, 390, 421, 795
BveI	ACCTGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	1001
Csp6I	GTAC	5 cut(s)	397, 466, 567, 834, 876
CviAII	CATG	6 cut(s)	32, 139, 216, 541, 895, 1112
CviQI	GTAC	5 cut(s)	397, 466, 567, 834, 876
DpnI	GATC	6 cut(s)	193, 503, 551, 557, 617, 1073
DpnII	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
DriI	GACNNNNNGTC	1 cut(s)	1053
Eam1104I	CTCTTC	2 cut(s)	53, 1004
Eam1105I	GACNNNNNGTC	1 cut(s)	1053
EarI	CTCTTC	2 cut(s)	53, 1004
Eco130I	CCWWGG	3 cut(s)	53, 672, 1062
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	1001
Eco81I	CCTNAGG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	3 cut(s)	53, 672, 1062
ErhI	CCWWGG	3 cut(s)	53, 672, 1062
FaeI	CATG	6 cut(s)	35, 142, 219, 544, 898, 1115
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	6 cut(s)	31, 138, 215, 540, 894, 1111
FokI	GGATG	7 cut(s)	116, 434, 464, 656, 762, 935, 980
FspBI	CTAG	3 cut(s)	288, 783, 804
Hin1II	CATG	6 cut(s)	35, 142, 219, 544, 898, 1115
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	160, 283, 733, 928
HphI	GGTGA	2 cut(s)	97, 821
Hpy166II	GTNNAC	2 cut(s)	129, 586
Hpy188I	TCNGA	5 cut(s)	173, 501, 816, 1028, 1047
Hpy188III	TCNNGA	6 cut(s)	343, 505, 553, 637, 1123, 1162
Hpy8I	GTNNAC	2 cut(s)	129, 586
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
Hsp92II	CATG	6 cut(s)	35, 142, 219, 544, 898, 1115
KpnI	GGTACC	1 cut(s)	570
Kzo9I	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	288, 783, 804
MalI	GATC	6 cut(s)	193, 503, 551, 557, 617, 1073
MboI	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	3 cut(s)	191, 549, 615
MhlI	GDGCHC	2 cut(s)	24, 322
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	4 cut(s)	154, 277, 727, 922
MmeI	TCCRAC	1 cut(s)	241
MroXI	GAANNNNTTC	2 cut(s)	92, 386
MseI	TTAA	2 cut(s)	843, 984
MslI	CAYNNNNRTG	3 cut(s)	330, 665, 893
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	890
NdeII	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
NlaIII	CATG	6 cut(s)	35, 142, 219, 544, 898, 1115
NlaIV	GGNNCC	3 cut(s)	193, 568, 1003
NmuCI	GTSAC	5 cut(s)	71, 667, 925, 1032, 1159
NspI	RCATGY	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	253
PciI	ACATGT	1 cut(s)	215
PdmI	GAANNNNTTC	2 cut(s)	92, 386
PflFI	GACNNNGTC	1 cut(s)	1113
PflMI	CCANNNNNTGG	1 cut(s)	32
PleI	GAGTC	4 cut(s)	154, 277, 727, 922
PpsI	GAGTC	4 cut(s)	154, 277, 727, 922
PscI	ACATGT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	821
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	193, 568, 1003
PspPI	GGNCC	1 cut(s)	1001
PsuI	RGATCY	3 cut(s)	191, 549, 615
PsyI	GACNNNGTC	1 cut(s)	1113
RsaI	GTAC	5 cut(s)	398, 467, 568, 835, 877
RsaNI	GTAC	5 cut(s)	397, 466, 567, 834, 876
RseI	CAYNNNNRTG	3 cut(s)	330, 665, 893
SaqAI	TTAA	2 cut(s)	843, 984
Sau3AI	GATC	6 cut(s)	191, 501, 549, 555, 615, 1071
Sau96I	GGNCC	1 cut(s)	1001
SchI	GAGTC	4 cut(s)	154, 277, 727, 922
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	24, 322
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	1001
SmiMI	CAYNNNNRTG	3 cut(s)	330, 665, 893
SmlI	CTYRAG	3 cut(s)	449, 1079, 1133
SmoI	CTYRAG	3 cut(s)	449, 1079, 1133
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	1 cut(s)	1095
SspMI	CTAG	3 cut(s)	288, 783, 804
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	3 cut(s)	53, 672, 1062
TasI	AATT	1 cut(s)	621
Tru1I	TTAA	2 cut(s)	843, 984
Tru9I	TTAA	2 cut(s)	843, 984
TscAI	CASTG	4 cut(s)	316, 397, 421, 802
TseFI	GTSAC	5 cut(s)	71, 667, 925, 1032, 1159
Tsp45I	GTSAC	5 cut(s)	71, 667, 925, 1032, 1159
TspDTI	ATGAA	5 cut(s)	127, 473, 527, 660, 702
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	4 cut(s)	316, 397, 421, 802
Tth111I	GACNNNGTC	1 cut(s)	1113
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	1001
XceI	RCATGY	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmnI	GAANNNNTTC	2 cut(s)	92, 386
XspI	CTAG	3 cut(s)	288, 783, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.