MD15G1435700.v1.1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
53598315 .. 53602124
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1435700.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGTCTCATCGTAAGTTTGAGCACCCAAGACATGGCTCTTTGGGGTTTCTTCCAAGGAAAAGAGCAGCCCGCCACAGAGGAAAAGTGAAAGCCTTCCCCAAAGATGATCCAACAAAAACTCCCAGATTGACTGCTTTCCTGGGATACAAAGCTGGAATGACCCATATTGTGAGAGATGTTGAAAAACCCGGGTCAAAGCTACACAAGAAAGAAACATGTGAAGCAGTTACAGTTATTGAAACACCACCAATGGTGGTTGTTGGTGTTGTTGGTTATGTGAAGACACCTCGTGGTCTCCGTTCCTTGGACACAGTTTGGGCCCAGCATCTGAGTGAGGAGGTGAAGAGGCGATTCTACAAGAACTGGTGCAAGTCAAAAAAGAAAGCATTCAGCAAGTACTCAAAAAAGTATGAGAGCGAAGATGGGAAAAAAGACATCCAGGCTCAGTTGGAGAAAATGAAGAAATATTGCACTGTGATTCGTGTTTTAGCCCACACCCAGATTAGGAAAATGAAGGGATTGAAGCAGAAGAAAGCCCATCTGATGGAGATTCAAGTGAATGGTGGGGACATTGCAAAGAAGGTTGACTATGCTTATAGCATGTTTGAGAAGCAGGTTCCTGTTGATGCTGTTTTCCAGAAAGATGAGATGATTGACATTATTGGGGTTACTAAGGGGAAGGGTTATGAGGGTGTGGTGACTCGATGGGGCGTCACCCGTCTTCCACGTAAGACCCATCGTGGTCTACGTAAAGTAGCCTGTATTGGTGCCTGGCATCCAGCTAGGGTGTCGTTTACTGTTGCCAGGGCTGGGCAGAATGGTTACCACCATCGTACTGAGATGAACAAGAAGATTTACAAGCTCGGAAAGGCTGATCAAGAGTCGCACTCTGCAATGACTGAATTTGACAGGACTGAGAAGGATATTACCCCGATGGGAGGTTTCCCACACTACGGTGAAGTGAAGCAGGATTACCTTCTAATGAAAGGCTGCTGCGTGGGTCCTAAAAAGCGCGTTGTTACTTTGAGGCAGACGCTTCTGAAGCAAACATCTAGGGTTGCTCTGGAGGACATTAAGCTCAAGTTCATTGATACATCGTCCAAATTTGGTCACGGTCGCTTCCAGACTACCCAAGAGAAGGCGAGGTACTACGGGCGGCTCAAGGCTTAA

Protein Analysis

390

Amino Acids

44.58

Weight (kDa)

10.09

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 1 - 370 2.7e-195 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 767
AccB7I CCANNNNNTGG 2 cut(s) 32, 544
AccI GTMKAC 1 cut(s) 745
AccII CGCG 1 cut(s) 1014
AciI CCGC 2 cut(s) 70, 1156
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 902, 1103
AcuI CTGAAG 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 711
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 3 cut(s) 398, 835, 1148
AfiI CCNNNNNNNGG 8 cut(s) 32, 304, 504, 544, 810, 938, 953, 1138
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 4 cut(s) 182, 239, 523, 554
AjnI CCWGG 4 cut(s) 138, 438, 770, 803
AleI CACNNNNGTG 1 cut(s) 954
AluBI AGCT 5 cut(s) 152, 199, 782, 862, 1078
AluI AGCT 5 cut(s) 152, 199, 782, 862, 1078
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 9, 299
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 318
ApaI GGGCCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 65, 990, 993
ApoI RAATTY 2 cut(s) 902, 1103
Asp700I GAANNNNTTC 2 cut(s) 92, 386
AspLEI GCGC 1 cut(s) 1014
AspS9I GGNCC 3 cut(s) 318, 319, 1001
AsuC2I CCSGG 2 cut(s) 189, 190
AsuHPI GGTGA 4 cut(s) 352, 706, 709, 968
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 322
BarI GAAGNNNNNNTAC 4 cut(s) 956, 988, 1130, 1162
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 287, 713
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 77, 977, 980
BccI CCATC 7 cut(s) 416, 538, 546, 699, 744, 837, 928
BciT130I CCWGG 4 cut(s) 140, 440, 772, 805
BciVI GTATCC 1 cut(s) 137
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 2 cut(s) 189, 190
BcoDI GTCTC 2 cut(s) 9, 299
BfaI CTAG 2 cut(s) 783, 1053
BfuAI ACCTGC 1 cut(s) 604
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 4 cut(s) 66, 991, 994, 1157
BlsI GCNGC 4 cut(s) 67, 992, 995, 1158
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 6 cut(s) 140, 189, 190, 440, 772, 805
Bme18I GGWCC 1 cut(s) 1001
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 318, 319, 1001
BmiI GGNNCC 4 cut(s) 320, 618, 769, 1002
BmrFI CCNGG 6 cut(s) 140, 189, 190, 440, 772, 805
BmsI GCATC 3 cut(s) 334, 616, 784
BpiI GAAGAC 2 cut(s) 287, 713
BplI GAGNNNNNCTC 2 cut(s) 872, 904
BpmI CTGGAG 1 cut(s) 1085
BpuEI CTTGAG 2 cut(s) 1064, 1145
BpuMI CCSGG 2 cut(s) 189, 190
BsaAI YACGTR 2 cut(s) 728, 749
BsaHI GRCGYC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 5 cut(s) 53, 139, 188, 303, 804
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 304, 504, 544, 810, 938, 953, 1138
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 570, 900
BseBI CCWGG 4 cut(s) 140, 440, 772, 805
BseDI CCNNGG 5 cut(s) 53, 139, 188, 303, 804
BseGI GGATG 2 cut(s) 435, 775
BseLI CCNNNNNNNGG 8 cut(s) 32, 304, 504, 544, 810, 938, 953, 1138
BseMI GCAATG 2 cut(s) 570, 900
BseMII CTCAG 4 cut(s) 320, 458, 828, 906
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 3 cut(s) 77, 977, 980
BseYI CCCAGC 2 cut(s) 321, 809
Bsh1236I CGCG 1 cut(s) 1014
Bsh1285I CGRYCG 1 cut(s) 1117
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 767
BsiEI CGRYCG 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 8 cut(s) 32, 304, 504, 544, 810, 938, 953, 1138
BsmAI GTCTC 2 cut(s) 9, 299
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 24, 322
Bsp143I GATC 2 cut(s) 106, 874
BspACI CCGC 2 cut(s) 70, 1156
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 4 cut(s) 321, 457, 829, 907
BspFNI CGCG 1 cut(s) 1014
BspLI GGNNCC 4 cut(s) 320, 618, 769, 1002
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 570, 900
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 5 cut(s) 53, 139, 188, 303, 804
BssMI GATC 2 cut(s) 106, 874
BssNI GRCGYC 1 cut(s) 711
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 53, 303
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 4 cut(s) 140, 440, 772, 805
Bst4CI ACNGT 6 cut(s) 232, 313, 475, 799, 956, 1115
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 711
BstBAI YACGTR 2 cut(s) 728, 749
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 5 cut(s) 329, 444, 672, 837, 915
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 2 cut(s) 435, 775
BstFNI CGCG 1 cut(s) 1014
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 2 cut(s) 109, 877
BstMAI GTCTC 2 cut(s) 9, 299
BstMBI GATC 2 cut(s) 106, 874
BstMCI CGRYCG 1 cut(s) 1117
BstMWI GCNNNNNNNGC 1 cut(s) 1042
BstNI CCWGG 4 cut(s) 140, 440, 772, 805
BstNSI RCATGY 2 cut(s) 219, 604
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 6 cut(s) 138, 187, 188, 438, 770, 803
BstSLI GKGCMC 1 cut(s) 322
BstSNI TACGTA 1 cut(s) 749
BstUI CGCG 1 cut(s) 1014
BstV1I GCAGC 3 cut(s) 77, 977, 980
BstV2I GAAGAC 2 cut(s) 287, 713
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 435, 775
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 328
CfoI GCGC 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 318, 319, 1001
Cfr9I CCCGGG 1 cut(s) 188
CseI GACGC 2 cut(s) 700, 1042
Csp6I GTAC 3 cut(s) 397, 834, 1147
CviAII CATG 3 cut(s) 32, 216, 601
CviQI GTAC 3 cut(s) 397, 834, 1147
DdeI CTNAG 5 cut(s) 329, 444, 672, 837, 915
DpnI GATC 2 cut(s) 108, 876
DpnII GATC 2 cut(s) 106, 874
DraIII CACNNNGTG 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco105I TACGTA 1 cut(s) 749
Eco130I CCWWGG 2 cut(s) 53, 303
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 1061
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 1001
EcoO65I GGTNACC 1 cut(s) 821
EcoRII CCWGG 4 cut(s) 138, 438, 770, 803
EcoT14I CCWWGG 2 cut(s) 53, 303
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 53, 303
FaeI CATG 3 cut(s) 35, 219, 604
FaiI YATR 9 cut(s) 33, 165, 217, 276, 411, 591, 597, 602, 687
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 31, 215, 600
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 66, 991, 994, 1157
FokI GGATG 2 cut(s) 422, 762
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 4 cut(s) 66, 991, 994, 1157
FspBI CTAG 2 cut(s) 783, 1053
GlaI GCGC 1 cut(s) 1013
GluI GCNGC 4 cut(s) 66, 991, 994, 1157
GsaI CCCAGC 2 cut(s) 325, 813
GsuI CTGGAG 1 cut(s) 1085
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 700, 1042
HhaI GCGC 1 cut(s) 1014
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 35, 219, 604
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 5 cut(s) 351, 478, 550, 700, 881
HpaII CCGG 1 cut(s) 189
HphI GGTGA 4 cut(s) 352, 706, 709, 968
Hpy166II GTNNAC 3 cut(s) 586, 746, 795
Hpy188I TCNGA 4 cut(s) 330, 543, 866, 1041
Hpy188III TCNNGA 4 cut(s) 637, 878, 1064, 1123
Hpy8I GTNNAC 3 cut(s) 586, 746, 795
HpyAV CCTTC 7 cut(s) 103, 508, 574, 673, 913, 986, 1132
HpyCH4III ACNGT 6 cut(s) 232, 313, 475, 799, 956, 1115
HpyCH4IV ACGT 2 cut(s) 727, 748
HpyCH4V TGCA 4 cut(s) 369, 471, 575, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 1042
HpyF3I CTNAG 5 cut(s) 329, 444, 672, 837, 915
HpySE526I ACGT 2 cut(s) 727, 748
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 35, 219, 604
HspAI GCGC 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 2 cut(s) 106, 874
Lsp1109I GCAGC 3 cut(s) 77, 977, 980
LweI GCATC 3 cut(s) 334, 616, 784
MaeI CTAG 2 cut(s) 783, 1053
MaeII ACGT 2 cut(s) 727, 748
MaeIII GTNAC 7 cut(s) 226, 667, 697, 712, 821, 1018, 1109
MalI GATC 2 cut(s) 108, 876
MboI GATC 2 cut(s) 106, 874
MboII GAAGA 8 cut(s) 41, 292, 355, 431, 472, 541, 713, 862
MhlI GDGCHC 2 cut(s) 24, 322
MluCI AATT 2 cut(s) 902, 1103
MlyI GAGTC 2 cut(s) 694, 890
MmeI TCCRAC 2 cut(s) 134, 429
MroXI GAANNNNTTC 2 cut(s) 92, 386
MseI TTAA 2 cut(s) 1074, 1168
MslI CAYNNNNRTG 2 cut(s) 330, 954
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 6 cut(s) 140, 189, 190, 440, 772, 805
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 4 cut(s) 140, 440, 772, 805
MvnI CGCG 1 cut(s) 1014
MwoI GCNNNNNNNGC 1 cut(s) 1042
NciI CCSGG 2 cut(s) 189, 190
NdeII GATC 2 cut(s) 106, 874
NlaIII CATG 3 cut(s) 35, 219, 604
NlaIV GGNNCC 4 cut(s) 320, 618, 769, 1002
NmuCI GTSAC 3 cut(s) 697, 712, 1109
NspI RCATGY 2 cut(s) 219, 604
OliI CACNNNNGTG 1 cut(s) 954
PciI ACATGT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 295, 745
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 2 cut(s) 92, 386
PfeI GAWTC 3 cut(s) 351, 478, 550
PflMI CCANNNNNTGG 2 cut(s) 32, 544
PkrI GCNGC 4 cut(s) 67, 992, 995, 1158
PleI GAGTC 2 cut(s) 694, 889
PpsI GAGTC 2 cut(s) 694, 889
Ppu21I YACGTR 2 cut(s) 728, 749
PpuMI RGGWCCY 1 cut(s) 1001
PscI ACATGT 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 4 cut(s) 138, 438, 770, 803
PspEI GGTNACC 1 cut(s) 821
PspFI CCCAGC 2 cut(s) 321, 809
PspGI CCWGG 4 cut(s) 138, 438, 770, 803
PspN4I GGNNCC 4 cut(s) 320, 618, 769, 1002
PspOMI GGGCCC 1 cut(s) 318
PspPI GGNCC 3 cut(s) 318, 319, 1001
PspPPI RGGWCCY 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 328
RsaI GTAC 3 cut(s) 398, 835, 1148
RsaNI GTAC 3 cut(s) 397, 834, 1147
RseI CAYNNNNRTG 2 cut(s) 330, 954
SaqAI TTAA 2 cut(s) 1074, 1168
SatI GCNGC 4 cut(s) 66, 991, 994, 1157
Sau3AI GATC 2 cut(s) 106, 874
Sau96I GGNCC 3 cut(s) 318, 319, 1001
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 694, 890
ScrFI CCNGG 6 cut(s) 140, 189, 190, 440, 772, 805
SduI GDGCHC 2 cut(s) 24, 322
SfaNI GCATC 3 cut(s) 334, 616, 784
SinI GGWCC 1 cut(s) 1001
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 330, 954
SmlI CTYRAG 2 cut(s) 1079, 1160
SmoI CTYRAG 2 cut(s) 1079, 1160
SnaBI TACGTA 1 cut(s) 749
Sse9I AATT 2 cut(s) 902, 1103
SsiI CCGC 2 cut(s) 70, 1156
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 783, 1053
StyD4I CCNGG 6 cut(s) 138, 187, 188, 438, 770, 803
StyI CCWWGG 2 cut(s) 53, 303
TaaI ACNGT 6 cut(s) 232, 313, 475, 799, 956, 1115
TaiI ACGT 2 cut(s) 730, 751
TaqI TCGA 1 cut(s) 703
TasI AATT 2 cut(s) 902, 1103
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 1159
TfiI GAWTC 3 cut(s) 351, 478, 550
Tru1I TTAA 2 cut(s) 1074, 1168
Tru9I TTAA 2 cut(s) 1074, 1168
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 3 cut(s) 697, 712, 1109
TseI GCWGC 3 cut(s) 65, 990, 993
Tsp45I GTSAC 3 cut(s) 697, 712, 1109
TspDTI ATGAA 5 cut(s) 473, 527, 857, 998, 1075
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 2 cut(s) 32, 544
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 902, 1103
XceI RCATGY 2 cut(s) 219, 604
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 2 cut(s) 92, 386
XspI CTAG 2 cut(s) 783, 1053
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.