Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

27302154 .. 27303038

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAAACGAGAAGAATGAGGTGATTGTTGCGGATAACTACTTCACTGGATCAAAGGACAACCTTAAGAAATGGATTGGCCATCCAAGATTCGAGCTTATTCGTCATGATGTGACTGAGCCGTTGCTGGTTGAGGTTGATCAAATATTCCATCTTGCTTGCCCTGCTTCTCCGATCTTCTACAAACACAATCCAATAAAGACAATGAAGACAAATATGATTGGTACAATGAACATGCTGGGACTTGCCAAGCGAGTTGGAGCAATGATTTTGCTCACATCTACTTCGGAGGTGTATGGAGATCCTCTTATTCACCCTCAAGTTGAGAGCTATTGGGGAAATGTGAATCCCAATGGAGTTAGAAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACATTATTGATGTTTGATTATCACAGGCAGCATGGCGTAGAGATACGGATCGCAAGGGTTTTCAACACTTATGGCCCTCGCATGAATATTGATGACGGCCGTGTTGTGAGCAACTTCATAGCCCAAGCTATCCGGGATGAACCCTTGACTGTTCAATCACCAGGAACGCAGACAAGGAGTTTCTGCTACGTCTCTGACATGGTCGATGCCCTTATTCGACTTATGCAAGGAGACAACACTGGTCCAATCAACATTGGGAATCCAGGTGAATTTACAATGCTCCAACTAGCAGAGAATGTCAAGGAGCTTATCAATCCTAAAGTGGAGATTAAGATGGTTGAAAACACACCTGATGATCCTCGCCAGAGGAAGCCTGACATCTCAAAAGCAAAGGAGTTGCTGGGATGGGAACCAAAGGTCAAGTTGCGCGACGGTCTGCCCCTCATGGAGGAGGACTTCCGTACAAGACTTGGTGTCCCCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

294

Amino Acids

33.46

Weight (kDa)

6.2

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	5 - 218	9e-32	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	16 - 279	1.3e-36	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	825
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	4 cut(s)	58, 296, 452, 746
AcoI	YGGCCR	2 cut(s)	79, 493
AcsI	RAATTY	1 cut(s)	665
AfaI	GTAC	2 cut(s)	226, 859
AfiI	CCNNNNNNNGG	1 cut(s)	844
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	460, 551, 737
AhdI	GACNNNNNGTC	1 cut(s)	869
AjnI	CCWGG	2 cut(s)	556, 658
AluBI	AGCT	4 cut(s)	97, 330, 524, 703
AluI	AGCT	4 cut(s)	97, 330, 524, 703
Alw26I	GTCTC	2 cut(s)	592, 621
AlwI	GGATC	4 cut(s)	58, 296, 452, 746
AoxI	GGCC	3 cut(s)	79, 469, 493
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	2 cut(s)	470, 638
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	4 cut(s)	34, 305, 546, 674
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	4 cut(s)	90, 159, 724, 795
BceAI	ACGGC	3 cut(s)	106, 480, 508
BciT130I	CCWGG	2 cut(s)	558, 660
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	592, 621
BfaI	CTAG	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme1390I	CCNGG	3 cut(s)	530, 558, 660
Bme18I	GGWCC	1 cut(s)	638
BmeRI	GACNNNNNGTC	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	470, 638
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	3 cut(s)	530, 558, 660
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse1I	ACTGG	2 cut(s)	52, 640
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	558, 660
BseGI	GGATG	3 cut(s)	82, 538, 806
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	52, 640
BseRI	GAGGAG	1 cut(s)	860
BseX3I	CGGCCG	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	2 cut(s)	238, 796
Bsh1236I	CGCG	1 cut(s)	825
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	3 cut(s)	81, 471, 495
BsiEI	CGRYCG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	255, 857
BslI	CCNNNNNNNGG	1 cut(s)	844
BsmAI	GTCTC	2 cut(s)	592, 621
BsmBI	CGTCTC	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	255, 857
BsnI	GGCC	3 cut(s)	81, 471, 495
Bsp143I	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	81, 471, 495
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	825
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	807
BspPI	GGATC	4 cut(s)	58, 296, 452, 746
BspTI	CTTAAG	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	52, 640
BssMI	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
Bst2UI	CCWGG	2 cut(s)	558, 660
Bst4CI	ACNGT	2 cut(s)	547, 830
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	82, 538, 806
BstFNI	CGCG	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	6 cut(s)	53, 142, 177, 304, 447, 754
BstMAI	GTCTC	2 cut(s)	592, 621
BstMBI	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	558, 660
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	528, 556, 658
BstUI	CGCG	1 cut(s)	825
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BstZI	CGGCCG	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	81, 471, 495
BtsCI	GGATG	3 cut(s)	82, 538, 806
BtsIMutI	CAGTG	2 cut(s)	45, 633
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	825
Cfr13I	GGNCC	2 cut(s)	470, 638
Csp6I	GTAC	2 cut(s)	225, 858
CviAII	CATG	6 cut(s)	107, 235, 428, 478, 595, 841
CviQI	GTAC	2 cut(s)	225, 858
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	6 cut(s)	52, 141, 176, 303, 446, 753
DpnII	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
DriI	GACNNNNNGTC	1 cut(s)	869
EaeI	YGGCCR	2 cut(s)	79, 493
EagI	CGGCCG	1 cut(s)	493
Eam1105I	GACNNNNNGTC	1 cut(s)	869
EclXI	CGGCCG	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	638
Eco52I	CGGCCG	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoRII	CCWGG	2 cut(s)	556, 658
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	6 cut(s)	110, 238, 431, 481, 598, 844
FaqI	GGGAC	2 cut(s)	255, 857
FatI	CATG	6 cut(s)	106, 234, 427, 477, 594, 840
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	3 cut(s)	69, 545, 813
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	1 cut(s)	425
GsaI	CCCAGC	2 cut(s)	242, 800
HaeIII	GGCC	3 cut(s)	81, 471, 495
HapII	CCGG	1 cut(s)	529
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	6 cut(s)	110, 238, 431, 481, 598, 844
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HinfI	GANTC	3 cut(s)	90, 346, 655
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	4 cut(s)	34, 305, 546, 674
Hpy188I	TCNGA	3 cut(s)	174, 289, 592
Hpy188III	TCNNGA	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	830
HpyCH4III	ACNGT	2 cut(s)	547, 830
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	110, 238, 431, 481, 598, 844
HspAI	GCGC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
LmnI	GCTCC	3 cut(s)	260, 681, 700
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	6 cut(s)	52, 141, 176, 303, 446, 753
MboI	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
MboII	GAAGA	3 cut(s)	25, 169, 220
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	2 cut(s)	665, 880
MluNI	TGGCCA	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	238, 703
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	3 cut(s)	66, 726, 883
Msp20I	TGGCCA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	3 cut(s)	530, 558, 660
MvaI	CCWGG	2 cut(s)	558, 660
MvnI	CGCG	1 cut(s)	825
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
NlaIII	CATG	6 cut(s)	110, 238, 431, 481, 598, 844
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	90, 346, 655
PflFI	GACNNNGTC	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	556, 658
PspFI	CCCAGC	2 cut(s)	238, 796
PspGI	CCWGG	2 cut(s)	556, 658
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	2 cut(s)	470, 638
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	596
RsaI	GTAC	2 cut(s)	226, 859
RsaNI	GTAC	2 cut(s)	225, 858
SaqAI	TTAA	3 cut(s)	66, 726, 883
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	6 cut(s)	50, 139, 174, 301, 444, 751
Sau96I	GGNCC	2 cut(s)	470, 638
ScrFI	CCNGG	3 cut(s)	530, 558, 660
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	65, 318
SmoI	CTYRAG	2 cut(s)	65, 318
Sse9I	AATT	2 cut(s)	665, 880
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	2 cut(s)	147, 484
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	3 cut(s)	528, 556, 658
TaaI	ACNGT	2 cut(s)	547, 830
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	93, 600, 613
TasI	AATT	2 cut(s)	665, 880
TfiI	GAWTC	3 cut(s)	90, 346, 655
Tru1I	TTAA	3 cut(s)	66, 726, 883
Tru9I	TTAA	3 cut(s)	66, 726, 883
TscAI	CASTG	2 cut(s)	52, 640
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	221, 245, 494, 502, 549
TspGWI	ACGGA	2 cut(s)	457, 845
TspRI	CASTG	2 cut(s)	52, 640
Tth111I	GACNNNGTC	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	638
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	1 cut(s)	665
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.