FvH4_2g13300

Belongs to the universal ribosomal protein uL3 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11619282 .. 11622150
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13300.t1

Sequence Viewer

Length: 1170 bp
ATGTCTCACAGGAAGTTCGAGCACCCCAGGCATGGATCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCCAAGGATGACCCATCCAAGCCCTGCAAGCTGACTGCTTTCCTTGGTTACAAGGCTGGGATGACTCACATTGTCAGGGATGTTGAGAAGCCTGGATCAAAGCTGCACAAGAAGGAGACATGTGAGGCTGTCACTATCATTGAGGCTCCTCCAATGGTTGTTGTTGGTGTTGTGGGTTATGTGAAAACCCCACGTGGCCTTCGTTCTTTGAACACAGTGTGGGCTCAGCATCTCAGTGAGGAGGTTAAGAGGAGGTTTTACAAGAACTGGTGCAAGTCCAAGAAGAAAGCTTTTGCAAAGTACTCCAAGACCTATGAAACTGATGAAGGAAAGAAGAGTATTGAAGCACAGTTTGAGAAACTGATTAAATATTCTACTGTTATTCGAGTTTTGGCTCACACCCAGATTCGAAAGATGAAGGGTCTGAAGCAGAAGAAAGCACATCTCATGGAGATCCAGGTGAACGGAGGCACAATTGCTCAAAAGGTTGAATTTGCCAAAAGCTTCTTTGAGAAGCAAATCCCTATTGATGCTGTCTTCCAGAAAGATGAGATGATTGACATTATTGGTGTGACAAAGGGTAAAGGTTATGAGGGTGTTGTTACTCGTTGGGGTGTCACCAGGCTTCCACGTAAGACCCATAGGGGTCTGCGTAAGGTTGCTTGTATTGGTGCATGGCATCCTGCTAGAGTTTCATTCACAGTTGCCAGGGCTGGTCAGAATGGATACCATCACCGTACTGAAATGAACAAGAAAATTTACAAGCTTGGAAAGGCTGGACAGGAATCACACACTGCTGTGACTGAGTTTGACAGGACTGAGAAAGACATCACCCCAATTGGTGGCTTCCCTCATTACGGTGTTGTGAAAGATGACTACATTCTGATCAAGGGATGCTGTGTTGGACCCAAGAAGAGGGTGGTTACTCTCCGCCAGTCTCTGCTCAAGCAGACCTCTCGCCTTGCTCTTGAGGACATCAAACTCAAGTTCATCGATACCTCCTCAAAGTTTGGGCATGGGCGCTTCCAGACCACACAGGAGAAACAGAAGTACTATGGACGGCTCAAGGCATAG

Protein Analysis

390

Amino Acids

44.32

Weight (kDa)

10.14

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 1 - 370 9.6e-196 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 938
AciI CCGC 1 cut(s) 1027
AclWI GGATC 4 cut(s) 30, 43, 199, 544
AcsI RAATTY 2 cut(s) 587, 852
AcuI CTGAAG 1 cut(s) 542
AcvI CACGTG 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 3 cut(s) 398, 835, 1148
AfiI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 3 cut(s) 307, 440, 587
AjnI CCWGG 5 cut(s) 26, 187, 552, 716, 803
AleI CACNNNNGTG 1 cut(s) 893
AluBI AGCT 6 cut(s) 65, 127, 199, 386, 600, 862
AluI AGCT 6 cut(s) 65, 127, 199, 386, 600, 862
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 9, 206, 1038
AlwI GGATC 4 cut(s) 30, 43, 199, 544
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 65, 199
ApoI RAATTY 2 cut(s) 587, 852
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 4 cut(s) 568, 706, 821, 919
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 322
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 52, 186
BccI CCATC 2 cut(s) 118, 834
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 5 cut(s) 28, 189, 554, 718, 805
BciVI GTATCC 1 cut(s) 815
BclI TGATCA 1 cut(s) 981
BcoDI GTCTC 3 cut(s) 9, 206, 1038
BfaI CTAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 1120
BfuI GTATCC 1 cut(s) 815
BisI GCNGC 2 cut(s) 66, 200
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 67, 201
BmcAI AGTACT 2 cut(s) 398, 1148
Bme1390I CCNGG 5 cut(s) 28, 189, 554, 718, 805
Bme18I GGWCC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 3 cut(s) 37, 243, 1003
BmrFI CCNGG 5 cut(s) 28, 189, 554, 718, 805
BmsI GCATC 4 cut(s) 334, 616, 784, 980
BpiI GAAGAC 1 cut(s) 625
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 4 cut(s) 1025, 1064, 1085, 1145
Bsa29I ATCGAT 1 cut(s) 1089
BsaAI YACGTR 2 cut(s) 290, 728
BsaJI CCNNGG 6 cut(s) 26, 40, 53, 99, 139, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
Bse1I ACTGG 2 cut(s) 368, 1030
BseBI CCWGG 5 cut(s) 28, 189, 554, 718, 805
BseCI ATCGAT 1 cut(s) 1089
BseDI CCNNGG 6 cut(s) 26, 40, 53, 99, 139, 804
BseGI GGATG 6 cut(s) 109, 110, 162, 181, 775, 995
BseLI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BseMII CTCAG 4 cut(s) 335, 343, 891, 906
BseNI ACTGG 2 cut(s) 368, 1030
BseRI GAGGAG 4 cut(s) 234, 350, 361, 1087
BseXI GCAGC 2 cut(s) 52, 186
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 1089
BsiHKAI GWGCWC 1 cut(s) 24
BslI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BsmAI GTCTC 3 cut(s) 9, 206, 1038
BsnI GGCC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 24, 322
Bsp143I GATC 4 cut(s) 35, 191, 549, 981
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 1027
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 4 cut(s) 334, 342, 892, 907
BspDI ATCGAT 1 cut(s) 1089
BspLI GGNNCC 3 cut(s) 37, 243, 1003
BspPI GGATC 4 cut(s) 30, 43, 199, 544
BspT104I TTCGAA 1 cut(s) 505
BsrI ACTGG 2 cut(s) 368, 1030
BssECI CCNNGG 6 cut(s) 26, 40, 53, 99, 139, 804
BssMI GATC 4 cut(s) 35, 191, 549, 981
BssT1I CCWWGG 4 cut(s) 40, 53, 99, 139
Bst2UI CCWGG 5 cut(s) 28, 189, 554, 718, 805
Bst4CI ACNGT 6 cut(s) 313, 447, 475, 799, 833, 956
Bst6I CTCTTC 2 cut(s) 425, 1004
BstBAI YACGTR 2 cut(s) 290, 728
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 63, 125
BstDEI CTNAG 4 cut(s) 321, 329, 900, 915
BstF5I GGATG 6 cut(s) 109, 110, 162, 181, 775, 995
BstH2I RGCGCY 1 cut(s) 1120
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 4 cut(s) 38, 194, 552, 984
BstMAI GTCTC 3 cut(s) 9, 206, 1038
BstMBI GATC 4 cut(s) 35, 191, 549, 981
BstMWI GCNNNNNNNGC 2 cut(s) 28, 124
BstNI CCWGG 5 cut(s) 28, 189, 554, 718, 805
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 5 cut(s) 26, 187, 552, 716, 803
BstV1I GCAGC 2 cut(s) 52, 186
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 2 cut(s) 35, 549
BstYI RGATCY 2 cut(s) 35, 549
Bsu15I ATCGAT 1 cut(s) 1089
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 1089
BtsCI GGATG 6 cut(s) 109, 110, 162, 181, 775, 995
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 318, 337, 888
Cac8I GCNNGC 2 cut(s) 63, 125
CaiI CAGNNNCTG 1 cut(s) 1036
CfoI GCGC 1 cut(s) 1119
Cfr13I GGNCC 1 cut(s) 1001
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 397, 834, 1147
CviAII CATG 5 cut(s) 32, 216, 544, 771, 1112
CviQI GTAC 3 cut(s) 397, 834, 1147
DdeI CTNAG 4 cut(s) 321, 329, 900, 915
DpnI GATC 4 cut(s) 37, 193, 551, 983
DpnII GATC 4 cut(s) 35, 191, 549, 981
DraIII CACNNNGTG 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 425, 1004
EarI CTCTTC 2 cut(s) 425, 1004
EciI GGCGGA 1 cut(s) 1016
Eco130I CCWWGG 4 cut(s) 40, 53, 99, 139
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 542
Eco72I CACGTG 1 cut(s) 290
EcoRII CCWGG 5 cut(s) 26, 187, 552, 716, 803
EcoT14I CCWWGG 4 cut(s) 40, 53, 99, 139
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 4 cut(s) 40, 53, 99, 139
FaeI CATG 5 cut(s) 35, 219, 547, 774, 1115
FatI CATG 5 cut(s) 31, 215, 543, 770, 1111
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 2 cut(s) 66, 200
FokI GGATG 6 cut(s) 97, 116, 169, 188, 762, 1002
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 2 cut(s) 66, 200
FspBI CTAG 1 cut(s) 783
GlaI GCGC 1 cut(s) 1118
GluI GCNGC 2 cut(s) 66, 200
GsaI CCCAGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 1120
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 1 cut(s) 1119
Hin1II CATG 5 cut(s) 35, 219, 547, 774, 1115
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HindIII AAGCTT 3 cut(s) 384, 598, 860
HinfI GANTC 3 cut(s) 160, 502, 881
HphI GGTGA 4 cut(s) 568, 706, 821, 919
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 522, 816, 981
Hpy188III TCNNGA 3 cut(s) 637, 1064, 1123
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 5 cut(s) 82, 202, 305, 416, 508
HpyCH4III ACNGT 6 cut(s) 313, 447, 475, 799, 833, 956
HpyCH4IV ACGT 2 cut(s) 289, 727
HpyCH4V TGCA 5 cut(s) 123, 202, 369, 392, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 124
HpyF3I CTNAG 4 cut(s) 321, 329, 900, 915
HpySE526I ACGT 2 cut(s) 289, 727
Hsp92II CATG 5 cut(s) 35, 219, 547, 774, 1115
HspAI GCGC 1 cut(s) 1117
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 4 cut(s) 35, 191, 549, 981
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 52, 186
LweI GCATC 4 cut(s) 334, 616, 784, 980
MaeI CTAG 1 cut(s) 783
MaeII ACGT 2 cut(s) 289, 727
MaeIII GTNAC 8 cut(s) 71, 143, 226, 667, 697, 712, 895, 1018
MalI GATC 4 cut(s) 37, 193, 551, 983
MboI GATC 4 cut(s) 35, 191, 549, 981
MboII GAAGA 6 cut(s) 41, 391, 442, 541, 625, 1021
MfeI CAATTG 2 cut(s) 570, 933
MflI RGATCY 2 cut(s) 35, 549
MhlI GDGCHC 2 cut(s) 24, 322
MluCI AATT 4 cut(s) 570, 587, 852, 933
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 342, 462
MslI CAYNNNNRTG 3 cut(s) 330, 893, 954
MspR9I CCNGG 5 cut(s) 28, 189, 554, 718, 805
MunI CAATTG 2 cut(s) 570, 933
MvaI CCWGG 5 cut(s) 28, 189, 554, 718, 805
MwoI GCNNNNNNNGC 2 cut(s) 28, 124
NdeII GATC 4 cut(s) 35, 191, 549, 981
NlaIII CATG 5 cut(s) 35, 219, 547, 774, 1115
NlaIV GGNNCC 3 cut(s) 37, 243, 1003
NmuCI GTSAC 5 cut(s) 71, 226, 667, 712, 895
NspI RCATGY 1 cut(s) 219
NspV TTCGAA 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 893
PciI ACATGT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 502, 881
PflMI CCANNNNNTGG 1 cut(s) 938
PkrI GCNGC 2 cut(s) 67, 201
PleI GAGTC 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 1 cut(s) 154
Ppu21I YACGTR 2 cut(s) 290, 728
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 5 cut(s) 26, 187, 552, 716, 803
PspCI CACGTG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 5 cut(s) 26, 187, 552, 716, 803
PspN4I GGNNCC 3 cut(s) 37, 243, 1003
PspPI GGNCC 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 2 cut(s) 35, 549
RsaI GTAC 3 cut(s) 398, 835, 1148
RsaNI GTAC 3 cut(s) 397, 834, 1147
RseI CAYNNNNRTG 3 cut(s) 330, 893, 954
SaqAI TTAA 2 cut(s) 342, 462
SatI GCNGC 2 cut(s) 66, 200
Sau3AI GATC 4 cut(s) 35, 191, 549, 981
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 2 cut(s) 398, 1148
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 5 cut(s) 28, 189, 554, 718, 805
SduI GDGCHC 2 cut(s) 24, 322
SfaNI GCATC 4 cut(s) 334, 616, 784, 980
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 3 cut(s) 330, 893, 954
SmlI CTYRAG 4 cut(s) 1040, 1064, 1079, 1160
SmoI CTYRAG 4 cut(s) 1040, 1064, 1079, 1160
Sse9I AATT 4 cut(s) 570, 587, 852, 933
SsiI CCGC 1 cut(s) 1027
SspI AATATT 1 cut(s) 467
SspMI CTAG 1 cut(s) 783
StyD4I CCNGG 5 cut(s) 26, 187, 552, 716, 803
StyI CCWWGG 4 cut(s) 40, 53, 99, 139
TaaI ACNGT 6 cut(s) 313, 447, 475, 799, 833, 956
TaiI ACGT 2 cut(s) 292, 730
TaqI TCGA 4 cut(s) 18, 481, 505, 1089
TasI AATT 4 cut(s) 570, 587, 852, 933
TatI WGTACW 2 cut(s) 396, 1146
TfiI GAWTC 2 cut(s) 502, 881
Tru1I TTAA 2 cut(s) 342, 462
Tru9I TTAA 2 cut(s) 342, 462
TscAI CASTG 3 cut(s) 318, 337, 895
TseFI GTSAC 5 cut(s) 71, 226, 667, 712, 895
TseI GCWGC 2 cut(s) 65, 199
Tsp45I GTSAC 5 cut(s) 71, 226, 667, 712, 895
TspDTI ATGAA 6 cut(s) 426, 435, 527, 780, 857, 1075
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 3 cut(s) 318, 337, 895
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 587, 852
XceI RCATGY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 783
ZrmI AGTACT 2 cut(s) 398, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.