Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

27295394 .. 27297934

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACTCAAACCCTAGCTGGTCGAACTGCGCTCCATTTGGAGAGAATCAGCTGGATCCGAACTCCATGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCGTCGTCGCTGAGAATGATATCGCCAGAAACATGTCATAGTACTGCTGCTGCTGCTGCTGCTGGTTCAAGTAGTGCAACATCAAGAAATTCCAGCACTAATATAAATGCGGAGGCAATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGATTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGTTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCAAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCATTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

202

Amino Acids

22.47

Weight (kDa)

6.16

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	108 - 165	1e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	4 cut(s)	50, 63, 545, 558
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	70, 217
AfaI	GTAC	2 cut(s)	172, 347
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	198, 334, 523
AhlI	ACTAGT	1 cut(s)	535
AluBI	AGCT	6 cut(s)	18, 52, 310, 456, 514, 581
AluI	AGCT	6 cut(s)	18, 52, 310, 456, 514, 581
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	4 cut(s)	50, 63, 545, 558
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	8 cut(s)	176, 179, 182, 185, 188, 411, 511, 530
ApoI	RAATTY	2 cut(s)	70, 217
AspLEI	GCGC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	279
BamHI	GGATCC	2 cut(s)	55, 550
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	2 cut(s)	15, 536
BisI	GCNGC	8 cut(s)	177, 180, 183, 186, 189, 412, 512, 531
BlsI	GCNGC	8 cut(s)	178, 181, 184, 187, 190, 413, 513, 532
BmcAI	AGTACT	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	57, 552
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	385, 436
BsaBI	GATNNNNATC	2 cut(s)	120, 549
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	2 cut(s)	120, 549
BseGI	GGATG	2 cut(s)	328, 550
BseJI	GATNNNNATC	2 cut(s)	120, 549
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BsgI	GTGCAG	2 cut(s)	516, 530
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	55, 118, 315, 550
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	57, 552
BspPI	GGATC	4 cut(s)	50, 63, 545, 558
BsrDI	GCAATG	1 cut(s)	252
BssMI	GATC	4 cut(s)	55, 118, 315, 550
Bst6I	CTCTTC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	328, 550
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	58, 121, 318, 553
BstMBI	GATC	4 cut(s)	55, 118, 315, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
BstNSI	RCATGY	1 cut(s)	165
BstV1I	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	2 cut(s)	55, 550
BstYI	RGATCY	2 cut(s)	55, 550
BsuRI	GGCC	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	328, 550
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	171, 346
CviAII	CATG	6 cut(s)	67, 97, 162, 275, 319, 491
CviJI	RGCY	9 cut(s)	18, 52, 279, 310, 372, 411, 456, 514, 581
CviKI_1	RGCY	9 cut(s)	18, 52, 279, 310, 372, 411, 456, 514, 581
CviQI	GTAC	2 cut(s)	171, 346
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	57, 120, 317, 552
DpnII	GATC	4 cut(s)	55, 118, 315, 550
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	66, 96, 161, 274, 318, 490
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	8 cut(s)	177, 180, 183, 186, 189, 412, 512, 531
FokI	GGATG	2 cut(s)	335, 557
Fsp4HI	GCNGC	8 cut(s)	177, 180, 183, 186, 189, 412, 512, 531
FspBI	CTAG	2 cut(s)	15, 536
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	8 cut(s)	177, 180, 183, 186, 189, 412, 512, 531
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	5 cut(s)	5, 46, 128, 330, 449
Hpy188I	TCNGA	3 cut(s)	60, 88, 307
Hpy188III	TCNNGA	4 cut(s)	125, 213, 364, 491
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	206, 290, 484, 511, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	55, 118, 315, 550
LmnI	GCTCC	2 cut(s)	37, 519
LpnPI	CCDG	9 cut(s)	4, 38, 110, 168, 177, 235, 296, 394, 540
Lsp1109I	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
MaeI	CTAG	2 cut(s)	15, 536
MaeII	ACGT	1 cut(s)	561
MalI	GATC	4 cut(s)	57, 120, 317, 552
MboI	GATC	4 cut(s)	55, 118, 315, 550
MboII	GAAGA	6 cut(s)	262, 436, 458, 576, 585, 594
MflI	RGATCY	2 cut(s)	55, 550
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	4 cut(s)	70, 217, 385, 502
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	4 cut(s)	235, 333, 429, 469
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
NdeII	GATC	4 cut(s)	55, 118, 315, 550
NlaIII	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
NlaIV	GGNNCC	2 cut(s)	57, 552
NspI	RCATGY	1 cut(s)	165
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	46, 128, 330
PkrI	GCNGC	8 cut(s)	178, 181, 184, 187, 190, 413, 513, 532
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	57, 552
PsuI	RGATCY	2 cut(s)	55, 550
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	172, 347
RsaNI	GTAC	2 cut(s)	171, 346
RseI	CAYNNNNRTG	1 cut(s)	489
SatI	GCNGC	8 cut(s)	177, 180, 183, 186, 189, 412, 512, 531
Sau3AI	GATC	4 cut(s)	55, 118, 315, 550
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	7 cut(s)	20, 54, 312, 458, 516, 564, 583
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	400, 451
SmoI	CTYRAG	2 cut(s)	400, 451
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	4 cut(s)	70, 217, 385, 502
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	15, 536
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	3 cut(s)	23, 75, 102
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	70, 217, 385, 502
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	46, 128, 330
TseI	GCWGC	8 cut(s)	176, 179, 182, 185, 188, 411, 511, 530
TspDTI	ATGAA	3 cut(s)	83, 263, 594
XapI	RAATTY	2 cut(s)	70, 217
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	2 cut(s)	15, 536
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.