Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

32519702 .. 32523303

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACATCTTGCAGATTGACTGCTTTCCTGGGATACAAAGCAGGAATGACCCATATTGTTAGAGATGTTGAAAAGCCAGGATCAAAGCTACACAAAAAGGAAACATGTGAAGCAGTTACAGTTATTGAAACACCACCCATGGTGGTTGTTGGGGTTGTGGGTTATGTGAAGACACCCCGTGGTCTCCGTTCTTTGGACACAGTTTGGGCCCAGCACCTGAGTGAGGAGGTGAAGAGAAGATACTACAAGAACTGGTGTAAGTCTAAGAAGAAGGCATTCACTAAGCACTCGAACAAATACGAGAGTGAAAATGGGAAAAGGGACATCCACGCCCAATTGGAGAAAATGAAAAAGTACTGCTCTGTGATTCGTGTTTTAGCCCACACTCAGATTAGAAAAATGAAGGGACTGAAGCAGAAGAAAGCCCATTTGATGGAGATTCAGGTGAATGGTGGAGATATTGCAAAGAAGGTTGACTATGCTTACAGCTTCTTTGAGAAGCAGATTCCTGTTGATGCTGTTTTCCAGAAAGATGAGATGATTGACATTATTGGGGTGACAAAGGGAAAAGGCTATGAGGGTGTGGTCACTCGCTGGGGTGTCACTCGTCTTCCCCGTAAGACCCATCGTGGGCTGAGAAAAGTAGCCTGCATTGGTGCTTGGCATCCAGCTAGGGTTTCGTTTACTGTTGCCAGGGCTGGGCAGAATGGCTACCATCATCGTACTGAAATGAACAAGAAGATATACAAGCTTGGAAAGTCTGGGCAGGAGTCTCACTCTGCAATGACCGAGTTTGACAGGACGGAGAAGGATATTACGCCCATGGGTGGTTTCCCACATTATGGTGGGGTGAAAGAGGATTATCTTGTCATAAAGGGCTGCTGTGTAGGTCCGAAAAAGCGAGTTGTTACCTTGAGGCAGTCACTTTTGAAGCAGACATCACGGGTTGCCATGGAGGAGATAAAGCTCAAGTTCATTGATACGTCATCCAAATTTGGCCATGGTCGTTTCCAAACTACACAAGAGAAGGCAAGGTTCTATGGCCGGCTCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

352

Amino Acids

40.14

Weight (kDa)

9.98

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	3 - 333	1.6e-171	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	433, 842
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	2 cut(s)	997, 1042
AcsI	RAATTY	1 cut(s)	992
AcuI	CTGAAG	1 cut(s)	431
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	356, 724
AfiI	CCNNNNNNNGG	8 cut(s)	193, 223, 433, 630, 699, 827, 842, 1051
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	71, 128, 931
AjnI	CCWGG	3 cut(s)	27, 76, 692
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	5 cut(s)	88, 489, 671, 751, 967
AluI	AGCT	5 cut(s)	88, 489, 671, 751, 967
Alw26I	GTCTC	2 cut(s)	188, 777
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	3 cut(s)	207, 997, 1042
ApaI	GGGCCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	879
ApoI	RAATTY	1 cut(s)	992
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	207, 208, 890
AsuHPI	GGTGA	4 cut(s)	241, 457, 568, 862
AvaII	GGWCC	1 cut(s)	890
BaeGI	GKGCMC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	2 cut(s)	176, 602
BbvI	GCAGC	1 cut(s)	866
BccI	CCATC	3 cut(s)	427, 633, 723
BciT130I	CCWGG	3 cut(s)	29, 78, 694
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	188, 777
BfaI	CTAG	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	880
BlsI	GCNGC	1 cut(s)	881
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	29, 78, 694
Bme18I	GGWCC	1 cut(s)	890
BmgT120I	GGNCC	3 cut(s)	207, 208, 890
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	29, 78, 694
BmsI	GCATC	2 cut(s)	505, 673
BpiI	GAAGAC	2 cut(s)	176, 602
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BpuEI	CTTGAG	3 cut(s)	934, 953, 1034
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	7 cut(s)	28, 138, 178, 693, 822, 951, 1000
Bsc4I	CCNNNNNNNGG	8 cut(s)	193, 223, 433, 630, 699, 827, 842, 1051
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	3 cut(s)	29, 78, 694
BseDI	CCNNGG	7 cut(s)	28, 138, 178, 693, 822, 951, 1000
BseGI	GGATG	3 cut(s)	324, 664, 986
BseLI	CCNNNNNNNGG	8 cut(s)	193, 223, 433, 630, 699, 827, 842, 1051
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	209, 401, 626
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	239, 971
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	866
BseYI	CCCAGC	3 cut(s)	210, 594, 698
BshFI	GGCC	3 cut(s)	209, 999, 1044
BsiSI	CCGG	1 cut(s)	1045
BslFI	GGGAC	2 cut(s)	335, 420
BslI	CCNNNNNNNGG	8 cut(s)	193, 223, 433, 630, 699, 827, 842, 1051
BsmAI	GTCTC	2 cut(s)	188, 777
BsmFI	GGGAC	2 cut(s)	335, 420
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	209, 999, 1044
Bso31I	GGTCTC	1 cut(s)	188
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	80
Bsp19I	CCATGG	4 cut(s)	138, 822, 951, 1000
BspANI	GGCC	3 cut(s)	209, 999, 1044
BspCNI	CTCAG	3 cut(s)	210, 400, 627
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	1044
BssECI	CCNNGG	7 cut(s)	28, 138, 178, 693, 822, 951, 1000
BssMI	GATC	1 cut(s)	80
BssT1I	CCWWGG	4 cut(s)	138, 822, 951, 1000
Bst2UI	CCWGG	3 cut(s)	29, 78, 694
Bst4CI	ACNGT	3 cut(s)	121, 202, 688
Bst6I	CTCTTC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	649, 1046
BstDEI	CTNAG	5 cut(s)	218, 264, 282, 387, 635
BstDSI	CCRYGG	5 cut(s)	138, 178, 822, 951, 1000
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	324, 664, 986
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	2 cut(s)	188, 777
BstMBI	GATC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	29, 78, 694
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	27, 76, 692
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	866
BstV2I	GAAGAC	2 cut(s)	176, 602
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	209, 999, 1044
BtgI	CCRYGG	5 cut(s)	138, 178, 822, 951, 1000
BtsCI	GGATG	3 cut(s)	324, 664, 986
Cac8I	GCNNGC	2 cut(s)	649, 1046
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	3 cut(s)	207, 208, 890
Csp6I	GTAC	2 cut(s)	355, 723
CviAII	CATG	5 cut(s)	105, 139, 823, 952, 1001
CviQI	GTAC	2 cut(s)	355, 723
DdeI	CTNAG	5 cut(s)	218, 264, 282, 387, 635
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DraIII	CACNNNGTG	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	997, 1042
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	4 cut(s)	138, 822, 951, 1000
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	890
Eco57I	CTGAAG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	27, 76, 692
EcoT14I	CCWWGG	4 cut(s)	138, 822, 951, 1000
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	4 cut(s)	138, 822, 951, 1000
FaeI	CATG	5 cut(s)	108, 142, 826, 955, 1004
FaqI	GGGAC	2 cut(s)	335, 420
FatI	CATG	5 cut(s)	104, 138, 822, 951, 1000
Fnu4HI	GCNGC	1 cut(s)	880
FokI	GGATG	3 cut(s)	311, 651, 973
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	880
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	1 cut(s)	880
GsaI	CCCAGC	3 cut(s)	214, 598, 702
HaeIII	GGCC	3 cut(s)	209, 999, 1044
HapII	CCGG	1 cut(s)	1045
Hin1II	CATG	5 cut(s)	108, 142, 826, 955, 1004
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	4 cut(s)	367, 439, 505, 770
HpaII	CCGG	1 cut(s)	1045
HphI	GGTGA	4 cut(s)	241, 457, 568, 862
Hpy166II	GTNNAC	2 cut(s)	475, 684
Hpy188I	TCNGA	2 cut(s)	390, 894
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	475, 684
HpyAV	CCTTC	5 cut(s)	265, 397, 463, 802, 1021
HpyCH4III	ACNGT	3 cut(s)	121, 202, 688
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	4 cut(s)	12, 464, 651, 782
HpyF3I	CTNAG	5 cut(s)	218, 264, 282, 387, 635
HpySE526I	ACGT	1 cut(s)	983
Hsp92II	CATG	5 cut(s)	108, 142, 826, 955, 1004
KroI	GCCGGC	1 cut(s)	1044
KroNI	GCCGGC	1 cut(s)	1046
Kzo9I	GATC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	866
LweI	GCATC	2 cut(s)	505, 673
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	6 cut(s)	115, 556, 586, 601, 907, 921
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	7 cut(s)	181, 244, 249, 280, 430, 602, 751
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	999
MluCI	AATT	2 cut(s)	335, 992
MluNI	TGGCCA	1 cut(s)	999
MlyI	GAGTC	1 cut(s)	779
MnlI	CCTC	6 cut(s)	217, 220, 571, 850, 909, 949
Mox20I	TGGCCA	1 cut(s)	999
MroNI	GCCGGC	1 cut(s)	1044
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	999
MslI	CAYNNNNRTG	2 cut(s)	219, 843
Msp20I	TGGCCA	1 cut(s)	999
MspI	CCGG	1 cut(s)	1045
MspR9I	CCNGG	3 cut(s)	29, 78, 694
MunI	CAATTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	3 cut(s)	29, 78, 694
NaeI	GCCGGC	1 cut(s)	1046
NcoI	CCATGG	4 cut(s)	138, 822, 951, 1000
NdeII	GATC	1 cut(s)	80
NgoMIV	GCCGGC	1 cut(s)	1044
NlaIII	CATG	5 cut(s)	108, 142, 826, 955, 1004
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	4 cut(s)	556, 586, 601, 921
NspI	RCATGY	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	219
PciI	ACATGT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	1046
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	367, 439, 505
PflMI	CCANNNNNTGG	2 cut(s)	433, 842
PkrI	GCNGC	1 cut(s)	881
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
PscI	ACATGT	1 cut(s)	104
Psp6I	CCWGG	3 cut(s)	27, 76, 692
PspFI	CCCAGC	3 cut(s)	210, 594, 698
PspGI	CCWGG	3 cut(s)	27, 76, 692
PspN4I	GGNNCC	1 cut(s)	209
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	207, 208, 890
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	356, 724
RsaNI	GTAC	2 cut(s)	355, 723
RseI	CAYNNNNRTG	2 cut(s)	219, 843
SatI	GCNGC	1 cut(s)	880
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	3 cut(s)	207, 208, 890
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	3 cut(s)	29, 78, 694
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	505, 673
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	2 cut(s)	219, 843
SmlI	CTYRAG	3 cut(s)	913, 968, 1049
SmoI	CTYRAG	3 cut(s)	913, 968, 1049
Sse9I	AATT	2 cut(s)	335, 992
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	3 cut(s)	27, 76, 692
StyI	CCWWGG	4 cut(s)	138, 822, 951, 1000
TaaI	ACNGT	3 cut(s)	121, 202, 688
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	803
TasI	AATT	2 cut(s)	335, 992
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	367, 439, 505
TseFI	GTSAC	4 cut(s)	556, 586, 601, 921
TseI	GCWGC	1 cut(s)	879
Tsp45I	GTSAC	4 cut(s)	556, 586, 601, 921
TspDTI	ATGAA	4 cut(s)	362, 416, 746, 964
TspGWI	ACGGA	2 cut(s)	176, 818
Van91I	CCANNNNNTGG	2 cut(s)	433, 842
VpaK11BI	GGWCC	1 cut(s)	890
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	992
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	672
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.