Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

39280300 .. 39284347

Gene Structure 4048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG336800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACCCATATTGTTAGAGATGTTGAAAAGCCAGGATCAAAGCTACACAAAAAGGAAACATGTGAAGCAGTTACAGTTGTTGAAACACCACCCATGGTGGTTGTTGGGGTTGTGGGTTATGTGAAGACACCCCGTGGTCTCCGTTCTTTGGACACAGTTTGGGCCCAGCACCTGAGTGAGGAGGTGAAAAGAAGATTCTACAAGAACTGGTGTAAATCTAAAAAGAAGGCATTCACTAAGCACTCGAACAAATACGAGAGTGAAAATGGGAAAAGGGACATCCACGCCCAATTGGAGAAAATGAAAAAGTACTGCTCTGTGATTCGTGTTTTAGCCCACACTCAGATTAGAAAAATGAAGGGACTGAAGCAGAAGAAAGCCCATTTGATGGAGATTCAGGTGAATGGTGGAGATATTGCAAAGAAGGTTGACTATGCTTACAGCTTCTTTGAGAAGCAGATTCCTGTTGATGCTGTTTTCCAGAAAGATGAGATGATTGACATTATTGGGGTGACAAAGGGAAAAGGCTATGAGGGTGTGGTTACTCGCTGGGGTGTCACTCGTCTTCCCCGTAAGACCCATCGTGGGCTTAGAAAAGTAGCCTGCATTGGTGCTTGGCATCCAGCTAGGGTTTCGTTTACTGTTGCCAGGGCTGGGCAGAATGGCTACCATCATCGTACTGAGATGAACAAGAAGATATACAAGCTTGGAAAGTCTGGGCAGGAGTCTCACTCTGCAATGACCGAGTTTGACAGGACGGAGAAGGATATTACGCCCATGGGTGGTTTCCCACATTATGGTGGGGTGAAAGAGGATTATCTTGTCATAAAGGGCTGCTGTGTAGGTCCGAAAAAGCGAGTTGTTACCTTGAGGCAGTCACTTTTGAAGCAGACATCACGGGTTGCCATGGAGGAGATAAAGCTCAAGTTCATTGATACGTCATCCAAATTTGGCCATGGTCGTTTCCAAACTACACAAGAGAAGGCAAGGTTCTATGGCCGGCTCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

337

Amino Acids

38.51

Weight (kDa)

9.99

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	1 - 318	9.6e-164	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	388, 797
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	2 cut(s)	952, 997
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	1 cut(s)	386
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	311, 679
AfiI	CCNNNNNNNGG	8 cut(s)	148, 178, 388, 585, 654, 782, 797, 1006
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	26, 83, 886
AjnI	CCWGG	2 cut(s)	31, 647
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	5 cut(s)	43, 444, 626, 706, 922
AluI	AGCT	5 cut(s)	43, 444, 626, 706, 922
Alw26I	GTCTC	2 cut(s)	143, 732
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	3 cut(s)	162, 952, 997
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	834
ApoI	RAATTY	1 cut(s)	947
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	162, 163, 845
AsuHPI	GGTGA	4 cut(s)	196, 412, 523, 817
AvaII	GGWCC	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	954
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	131, 557
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	3 cut(s)	382, 588, 678
BciT130I	CCWGG	2 cut(s)	33, 649
BcoDI	GTCTC	2 cut(s)	143, 732
BfaI	CTAG	1 cut(s)	627
BisI	GCNGC	1 cut(s)	835
BlsI	GCNGC	1 cut(s)	836
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	33, 649
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	3 cut(s)	162, 163, 845
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	33, 649
BmsI	GCATC	2 cut(s)	460, 628
BpiI	GAAGAC	2 cut(s)	131, 557
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpuEI	CTTGAG	3 cut(s)	889, 908, 989
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	6 cut(s)	93, 133, 648, 777, 906, 955
Bsc4I	CCNNNNNNNGG	8 cut(s)	148, 178, 388, 585, 654, 782, 797, 1006
Bse118I	RCCGGY	1 cut(s)	999
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	33, 649
BseDI	CCNNGG	6 cut(s)	93, 133, 648, 777, 906, 955
BseGI	GGATG	3 cut(s)	279, 619, 941
BseLI	CCNNNNNNNGG	8 cut(s)	148, 178, 388, 585, 654, 782, 797, 1006
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	3 cut(s)	164, 356, 672
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	194, 926
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	821
BseYI	CCCAGC	3 cut(s)	165, 549, 653
BshFI	GGCC	3 cut(s)	164, 954, 999
BsiSI	CCGG	1 cut(s)	1000
BslFI	GGGAC	2 cut(s)	290, 375
BslI	CCNNNNNNNGG	8 cut(s)	148, 178, 388, 585, 654, 782, 797, 1006
BsmAI	GTCTC	2 cut(s)	143, 732
BsmFI	GGGAC	2 cut(s)	290, 375
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	164, 954, 999
Bso31I	GGTCTC	1 cut(s)	143
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	35
Bsp19I	CCATGG	4 cut(s)	93, 777, 906, 955
BspANI	GGCC	3 cut(s)	164, 954, 999
BspCNI	CTCAG	3 cut(s)	165, 355, 673
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	999
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	999
BssECI	CCNNGG	6 cut(s)	93, 133, 648, 777, 906, 955
BssMI	GATC	1 cut(s)	35
BssT1I	CCWWGG	4 cut(s)	93, 777, 906, 955
Bst2UI	CCWGG	2 cut(s)	33, 649
Bst4CI	ACNGT	3 cut(s)	76, 157, 643
BstC8I	GCNNGC	2 cut(s)	604, 1001
BstDEI	CTNAG	5 cut(s)	173, 237, 342, 590, 681
BstDSI	CCRYGG	5 cut(s)	93, 133, 777, 906, 955
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	279, 619, 941
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	143, 732
BstMBI	GATC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	33, 649
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	31, 647
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	2 cut(s)	131, 557
BsuRI	GGCC	3 cut(s)	164, 954, 999
BtgI	CCRYGG	5 cut(s)	93, 133, 777, 906, 955
BtsCI	GGATG	3 cut(s)	279, 619, 941
Cac8I	GCNNGC	2 cut(s)	604, 1001
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	999
Cfr13I	GGNCC	3 cut(s)	162, 163, 845
Csp6I	GTAC	2 cut(s)	310, 678
CviAII	CATG	5 cut(s)	60, 94, 778, 907, 956
CviQI	GTAC	2 cut(s)	310, 678
DdeI	CTNAG	5 cut(s)	173, 237, 342, 590, 681
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	2 cut(s)	952, 997
Eco130I	CCWWGG	4 cut(s)	93, 777, 906, 955
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	31, 647
EcoT14I	CCWWGG	4 cut(s)	93, 777, 906, 955
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	4 cut(s)	93, 777, 906, 955
FaeI	CATG	5 cut(s)	63, 97, 781, 910, 959
FaqI	GGGAC	2 cut(s)	290, 375
FatI	CATG	5 cut(s)	59, 93, 777, 906, 955
Fnu4HI	GCNGC	1 cut(s)	835
FokI	GGATG	3 cut(s)	266, 606, 928
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	835
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	1 cut(s)	835
GsaI	CCCAGC	3 cut(s)	169, 553, 657
HaeIII	GGCC	3 cut(s)	164, 954, 999
HapII	CCGG	1 cut(s)	1000
Hin1II	CATG	5 cut(s)	63, 97, 781, 910, 959
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	5 cut(s)	195, 322, 394, 460, 725
HpaII	CCGG	1 cut(s)	1000
HphI	GGTGA	4 cut(s)	196, 412, 523, 817
Hpy166II	GTNNAC	2 cut(s)	430, 639
Hpy188I	TCNGA	2 cut(s)	345, 849
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	2 cut(s)	430, 639
HpyAV	CCTTC	5 cut(s)	220, 352, 418, 757, 976
HpyCH4III	ACNGT	3 cut(s)	76, 157, 643
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	3 cut(s)	419, 606, 737
HpyF3I	CTNAG	5 cut(s)	173, 237, 342, 590, 681
HpySE526I	ACGT	1 cut(s)	938
Hsp92II	CATG	5 cut(s)	63, 97, 781, 910, 959
KroI	GCCGGC	1 cut(s)	999
KroNI	GCCGGC	1 cut(s)	1001
Kzo9I	GATC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	2 cut(s)	460, 628
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	938
MaeIII	GTNAC	6 cut(s)	70, 511, 541, 556, 862, 876
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	5 cut(s)	136, 204, 385, 557, 706
MfeI	CAATTG	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	954
MluCI	AATT	2 cut(s)	290, 947
MluNI	TGGCCA	1 cut(s)	954
MlyI	GAGTC	1 cut(s)	734
MnlI	CCTC	6 cut(s)	172, 175, 526, 805, 864, 904
Mox20I	TGGCCA	1 cut(s)	954
MroNI	GCCGGC	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	954
MslI	CAYNNNNRTG	2 cut(s)	174, 798
Msp20I	TGGCCA	1 cut(s)	954
MspI	CCGG	1 cut(s)	1000
MspR9I	CCNGG	2 cut(s)	33, 649
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	2 cut(s)	33, 649
NaeI	GCCGGC	1 cut(s)	1001
NcoI	CCATGG	4 cut(s)	93, 777, 906, 955
NdeII	GATC	1 cut(s)	35
NgoMIV	GCCGGC	1 cut(s)	999
NlaIII	CATG	5 cut(s)	63, 97, 781, 910, 959
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	3 cut(s)	511, 556, 876
NspI	RCATGY	1 cut(s)	63
OliI	CACNNNNGTG	1 cut(s)	174
PciI	ACATGT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	195, 322, 394, 460
PflMI	CCANNNNNTGG	2 cut(s)	388, 797
PkrI	GCNGC	1 cut(s)	836
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PscI	ACATGT	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	31, 647
PspFI	CCCAGC	3 cut(s)	165, 549, 653
PspGI	CCWGG	2 cut(s)	31, 647
PspN4I	GGNNCC	1 cut(s)	164
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	162, 163, 845
PstNI	CAGNNNCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	311, 679
RsaNI	GTAC	2 cut(s)	310, 678
RseI	CAYNNNNRTG	2 cut(s)	174, 798
SatI	GCNGC	1 cut(s)	835
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	3 cut(s)	162, 163, 845
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	33, 649
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	460, 628
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	2 cut(s)	174, 798
SmlI	CTYRAG	3 cut(s)	868, 923, 1004
SmoI	CTYRAG	3 cut(s)	868, 923, 1004
Sse9I	AATT	2 cut(s)	290, 947
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	31, 647
StyI	CCWWGG	4 cut(s)	93, 777, 906, 955
TaaI	ACNGT	3 cut(s)	76, 157, 643
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	2 cut(s)	290, 947
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	4 cut(s)	195, 322, 394, 460
TseFI	GTSAC	3 cut(s)	511, 556, 876
TseI	GCWGC	1 cut(s)	834
Tsp45I	GTSAC	3 cut(s)	511, 556, 876
TspDTI	ATGAA	4 cut(s)	317, 371, 701, 919
TspGWI	ACGGA	2 cut(s)	131, 773
Van91I	CCANNNNNTGG	2 cut(s)	388, 797
VpaK11BI	GGWCC	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	947
XceI	RCATGY	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.