Belongs to the universal ribosomal protein uL3 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L3 | PF00297 | 1 - 369 | 1.7e-193 | Ribosomal protein L3 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1052 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 32 |
| AccI | GTMKAC | 1 cut(s) | 855 |
| AciI | CCGC | 1 cut(s) | 298 |
| AclWI | GGATC | 2 cut(s) | 101, 199 |
| AcoI | YGGCCR | 1 cut(s) | 874 |
| AcuI | CTGAAG | 2 cut(s) | 438, 542 |
| AcyI | GRCGYC | 1 cut(s) | 1049 |
| AdeI | CACNNNGTG | 3 cut(s) | 169, 290, 315 |
| AfaI | GTAC | 2 cut(s) | 467, 835 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 32, 938, 953, 954 |
| AflII | CTTAAG | 2 cut(s) | 1040, 1079 |
| AflIII | ACRYGT | 2 cut(s) | 215, 1012 |
| AgsI | TTSAA | 3 cut(s) | 182, 440, 608 |
| AjnI | CCWGG | 2 cut(s) | 187, 876 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 19, 51 |
| AluBI | AGCT | 7 cut(s) | 65, 152, 224, 782, 809, 1078, 1169 |
| AluI | AGCT | 7 cut(s) | 65, 152, 224, 782, 809, 1078, 1169 |
| Alw26I | GTCTC | 5 cut(s) | 9, 233, 306, 793, 875 |
| AlwI | GGATC | 2 cut(s) | 101, 199 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 328 |
| AoxI | GGCC | 5 cut(s) | 90, 366, 874, 1001, 1140 |
| ApeKI | GCWGC | 1 cut(s) | 1094 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 92, 386 |
| AspS9I | GGNCC | 2 cut(s) | 366, 1001 |
| AsuC2I | CCSGG | 1 cut(s) | 860 |
| AsuHPI | GGTGA | 4 cut(s) | 121, 661, 821, 1030 |
| AsuNHI | GCTAGC | 1 cut(s) | 65 |
| AxyI | CCTNAGG | 1 cut(s) | 99 |
| BalI | TGGCCA | 1 cut(s) | 876 |
| BanII | GRGCYC | 1 cut(s) | 322 |
| BauI | CACGAG | 1 cut(s) | 288 |
| BbsI | GAAGAC | 1 cut(s) | 737 |
| BbvI | GCAGC | 1 cut(s) | 1081 |
| BccI | CCATC | 4 cut(s) | 638, 699, 834, 1169 |
| BciT130I | CCWGG | 2 cut(s) | 189, 878 |
| BciVI | GTATCC | 1 cut(s) | 137 |
| BclI | TGATCA | 1 cut(s) | 981 |
| BcnI | CCSGG | 1 cut(s) | 860 |
| BcoDI | GTCTC | 5 cut(s) | 9, 233, 306, 793, 875 |
| BfaI | CTAG | 5 cut(s) | 66, 393, 783, 804, 1053 |
| BfmI | CTRYAG | 1 cut(s) | 595 |
| BfrI | CTTAAG | 2 cut(s) | 1040, 1079 |
| BfuI | GTATCC | 1 cut(s) | 137 |
| BisI | GCNGC | 1 cut(s) | 1095 |
| BlpI | GCTNAGC | 1 cut(s) | 321 |
| BlsI | GCNGC | 1 cut(s) | 1096 |
| BmcAI | AGTACT | 1 cut(s) | 467 |
| Bme1390I | CCNGG | 3 cut(s) | 189, 860, 878 |
| BmgT120I | GGNCC | 2 cut(s) | 366, 1001 |
| BmiI | GGNNCC | 1 cut(s) | 1002 |
| BmrFI | CCNGG | 3 cut(s) | 189, 860, 878 |
| BmrI | ACTGGG | 2 cut(s) | 373, 614 |
| BmsI | GCATC | 4 cut(s) | 31, 334, 616, 784 |
| BmtI | GCTAGC | 1 cut(s) | 69 |
| BmuI | ACTGGG | 2 cut(s) | 373, 614 |
| BpiI | GAAGAC | 1 cut(s) | 737 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 872, 904 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 321 |
| BpuEI | CTTGAG | 1 cut(s) | 1116 |
| BpuMI | CCSGG | 1 cut(s) | 860 |
| BsaBI | GATNNNNATC | 2 cut(s) | 554, 656 |
| BsaHI | GRCGYC | 1 cut(s) | 1049 |
| BsaI | GGTCTC | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 2 cut(s) | 53, 76 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 32, 938, 953, 954 |
| Bse1I | ACTGG | 2 cut(s) | 368, 620 |
| Bse21I | CCTNAGG | 1 cut(s) | 99 |
| Bse8I | GATNNNNATC | 2 cut(s) | 554, 656 |
| BseBI | CCWGG | 2 cut(s) | 189, 878 |
| BseDI | CCNNGG | 2 cut(s) | 53, 76 |
| BseGI | GGATG | 5 cut(s) | 22, 109, 162, 775, 995 |
| BseJI | GATNNNNATC | 2 cut(s) | 554, 656 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 32, 938, 953, 954 |
| BseMII | CTCAG | 4 cut(s) | 320, 335, 512, 903 |
| BseNI | ACTGG | 2 cut(s) | 368, 620 |
| BseRI | GAGGAG | 1 cut(s) | 1082 |
| BseXI | GCAGC | 1 cut(s) | 1081 |
| BseYI | CCCAGC | 1 cut(s) | 152 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1117 |
| BshFI | GGCC | 5 cut(s) | 92, 368, 876, 1003, 1142 |
| BsiEI | CGRYCG | 1 cut(s) | 1117 |
| BsiSI | CCGG | 1 cut(s) | 859 |
| BslFI | GGGAC | 2 cut(s) | 602, 1122 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 32, 938, 953, 954 |
| BsmAI | GTCTC | 5 cut(s) | 9, 233, 306, 793, 875 |
| BsmFI | GGGAC | 2 cut(s) | 602, 1122 |
| BsnI | GGCC | 5 cut(s) | 92, 368, 876, 1003, 1142 |
| Bso31I | GGTCTC | 1 cut(s) | 306 |
| Bsp1286I | GDGCHC | 1 cut(s) | 322 |
| Bsp143I | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 321 |
| BspACI | CCGC | 1 cut(s) | 298 |
| BspANI | GGCC | 5 cut(s) | 92, 368, 876, 1003, 1142 |
| BspCNI | CTCAG | 4 cut(s) | 321, 334, 511, 902 |
| BspLI | GGNNCC | 1 cut(s) | 1002 |
| BspMAI | CTGCAG | 1 cut(s) | 599 |
| BspOI | GCTAGC | 1 cut(s) | 69 |
| BspPI | GGATC | 2 cut(s) | 101, 199 |
| BspTI | CTTAAG | 2 cut(s) | 1040, 1079 |
| BspTNI | GGTCTC | 1 cut(s) | 306 |
| BsrI | ACTGG | 2 cut(s) | 368, 620 |
| BssECI | CCNNGG | 2 cut(s) | 53, 76 |
| BssMI | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| BssNAI | GTATAC | 1 cut(s) | 856 |
| BssNI | GRCGYC | 1 cut(s) | 1049 |
| BssSI | CACGAG | 1 cut(s) | 288 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst1107I | GTATAC | 1 cut(s) | 856 |
| Bst2BI | CACGAG | 1 cut(s) | 288 |
| Bst2UI | CCWGG | 2 cut(s) | 189, 878 |
| Bst4CI | ACNGT | 6 cut(s) | 77, 313, 799, 821, 833, 1115 |
| BstACI | GRCGYC | 1 cut(s) | 1049 |
| BstAFI | CTTAAG | 2 cut(s) | 1040, 1079 |
| BstC8I | GCNNGC | 3 cut(s) | 67, 595, 1059 |
| BstDEI | CTNAG | 9 cut(s) | 99, 114, 321, 329, 402, 498, 889, 1005, 1170 |
| BstDSI | CCRYGG | 1 cut(s) | 76 |
| BstEII | GGTNACC | 1 cut(s) | 821 |
| BstF5I | GGATG | 5 cut(s) | 22, 109, 162, 775, 995 |
| BstKTI | GATC | 6 cut(s) | 109, 194, 234, 558, 984, 1074 |
| BstMAI | GTCTC | 5 cut(s) | 9, 233, 306, 793, 875 |
| BstMBI | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| BstMCI | CGRYCG | 1 cut(s) | 1117 |
| BstNI | CCWGG | 2 cut(s) | 189, 878 |
| BstNSI | RCATGY | 1 cut(s) | 219 |
| BstPI | GGTNACC | 1 cut(s) | 821 |
| BstSCI | CCNGG | 3 cut(s) | 187, 858, 876 |
| BstSFI | CTRYAG | 1 cut(s) | 595 |
| BstV1I | GCAGC | 1 cut(s) | 1081 |
| BstV2I | GAAGAC | 1 cut(s) | 737 |
| BstZ17I | GTATAC | 1 cut(s) | 856 |
| Bsu36I | CCTNAGG | 1 cut(s) | 99 |
| BsuI | GTATCC | 1 cut(s) | 137 |
| BsuRI | GGCC | 5 cut(s) | 92, 368, 876, 1003, 1142 |
| BtgI | CCRYGG | 1 cut(s) | 76 |
| BtsCI | GGATG | 5 cut(s) | 22, 109, 162, 775, 995 |
| BtsIMutI | CAGTG | 1 cut(s) | 309 |
| Cac8I | GCNNGC | 3 cut(s) | 67, 595, 1059 |
| CaiI | CAGNNNCTG | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 2 cut(s) | 366, 1001 |
| CseI | GACGC | 1 cut(s) | 1100 |
| Csp6I | GTAC | 2 cut(s) | 466, 834 |
| CviAII | CATG | 4 cut(s) | 32, 216, 410, 895 |
| CviQI | GTAC | 2 cut(s) | 466, 834 |
| DdeI | CTNAG | 9 cut(s) | 99, 114, 321, 329, 402, 498, 889, 1005, 1170 |
| DpnI | GATC | 6 cut(s) | 108, 193, 233, 557, 983, 1073 |
| DpnII | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| DraIII | CACNNNGTG | 3 cut(s) | 169, 290, 315 |
| EaeI | YGGCCR | 1 cut(s) | 874 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco147I | AGGCCT | 1 cut(s) | 92 |
| Eco24I | GRGCYC | 1 cut(s) | 322 |
| Eco31I | GGTCTC | 1 cut(s) | 306 |
| Eco32I | GATATC | 2 cut(s) | 658, 925 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 542 |
| Eco81I | CCTNAGG | 1 cut(s) | 99 |
| Eco91I | GGTNACC | 1 cut(s) | 821 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1001 |
| EcoO65I | GGTNACC | 1 cut(s) | 821 |
| EcoRII | CCWGG | 2 cut(s) | 187, 876 |
| EcoRV | GATATC | 2 cut(s) | 658, 925 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| EcoT38I | GRGCYC | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| FaeI | CATG | 4 cut(s) | 35, 219, 413, 898 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1018, 1050 |
| FaqI | GGGAC | 2 cut(s) | 602, 1122 |
| FatI | CATG | 4 cut(s) | 31, 215, 409, 894 |
| FbaI | TGATCA | 1 cut(s) | 981 |
| FblI | GTMKAC | 1 cut(s) | 855 |
| Fnu4HI | GCNGC | 1 cut(s) | 1095 |
| FokI | GGATG | 5 cut(s) | 9, 116, 169, 762, 1002 |
| FriOI | GRGCYC | 1 cut(s) | 322 |
| Fsp4HI | GCNGC | 1 cut(s) | 1095 |
| FspBI | CTAG | 5 cut(s) | 66, 393, 783, 804, 1053 |
| GluI | GCNGC | 1 cut(s) | 1095 |
| GsaI | CCCAGC | 1 cut(s) | 156 |
| HaeIII | GGCC | 5 cut(s) | 92, 368, 876, 1003, 1142 |
| HapII | CCGG | 1 cut(s) | 859 |
| HgaI | GACGC | 1 cut(s) | 1100 |
| Hin1I | GRCGYC | 1 cut(s) | 1049 |
| Hin1II | CATG | 4 cut(s) | 35, 219, 413, 898 |
| HincII | GTYRAC | 1 cut(s) | 586 |
| HindII | GTYRAC | 1 cut(s) | 586 |
| HindIII | AAGCTT | 2 cut(s) | 1076, 1167 |
| HinfI | GANTC | 6 cut(s) | 126, 160, 550, 733, 786, 883 |
| HpaII | CCGG | 1 cut(s) | 859 |
| HphI | GGTGA | 4 cut(s) | 121, 661, 821, 1030 |
| Hpy166II | GTNNAC | 2 cut(s) | 586, 856 |
| Hpy188I | TCNGA | 5 cut(s) | 330, 482, 501, 543, 555 |
| Hpy188III | TCNNGA | 3 cut(s) | 637, 1123, 1133 |
| Hpy8I | GTNNAC | 2 cut(s) | 586, 856 |
| HpyCH4III | ACNGT | 6 cut(s) | 77, 313, 799, 821, 833, 1115 |
| HpyCH4IV | ACGT | 2 cut(s) | 1012, 1049 |
| HpyCH4V | TGCA | 3 cut(s) | 123, 309, 597 |
| HpyF3I | CTNAG | 9 cut(s) | 99, 114, 321, 329, 402, 498, 889, 1005, 1170 |
| HpySE526I | ACGT | 2 cut(s) | 1012, 1049 |
| Hsp92I | GRCGYC | 1 cut(s) | 1049 |
| Hsp92II | CATG | 4 cut(s) | 35, 219, 413, 898 |
| Ksp22I | TGATCA | 1 cut(s) | 981 |
| Kzo9I | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| Lsp1109I | GCAGC | 1 cut(s) | 1081 |
| LweI | GCATC | 4 cut(s) | 31, 334, 616, 784 |
| MaeI | CTAG | 5 cut(s) | 66, 393, 783, 804, 1053 |
| MaeII | ACGT | 2 cut(s) | 1012, 1049 |
| MaeIII | GTNAC | 6 cut(s) | 226, 667, 697, 712, 821, 1018 |
| MalI | GATC | 6 cut(s) | 108, 193, 233, 557, 983, 1073 |
| MboI | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| MboII | GAAGA | 9 cut(s) | 347, 391, 431, 466, 472, 541, 625, 737, 980 |
| MfeI | CAATTG | 1 cut(s) | 446 |
| MhlI | GDGCHC | 1 cut(s) | 322 |
| MlsI | TGGCCA | 1 cut(s) | 876 |
| MluCI | AATT | 2 cut(s) | 338, 446 |
| MluNI | TGGCCA | 1 cut(s) | 876 |
| MlyI | GAGTC | 5 cut(s) | 120, 154, 727, 795, 877 |
| MmeI | TCCRAC | 1 cut(s) | 134 |
| MnlI | CCTC | 6 cut(s) | 142, 255, 297, 342, 932, 1060 |
| Mox20I | TGGCCA | 1 cut(s) | 876 |
| MroXI | GAANNNNTTC | 2 cut(s) | 92, 386 |
| MscI | TGGCCA | 1 cut(s) | 876 |
| MseI | TTAA | 3 cut(s) | 1025, 1041, 1080 |
| MslI | CAYNNNNRTG | 2 cut(s) | 543, 932 |
| Msp20I | TGGCCA | 1 cut(s) | 876 |
| MspCI | CTTAAG | 2 cut(s) | 1040, 1079 |
| MspI | CCGG | 1 cut(s) | 859 |
| MspR9I | CCNGG | 3 cut(s) | 189, 860, 878 |
| MunI | CAATTG | 1 cut(s) | 446 |
| MvaI | CCWGG | 2 cut(s) | 189, 878 |
| NciI | CCSGG | 1 cut(s) | 860 |
| NdeII | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| NheI | GCTAGC | 1 cut(s) | 65 |
| NlaIII | CATG | 4 cut(s) | 35, 219, 413, 898 |
| NlaIV | GGNNCC | 1 cut(s) | 1002 |
| NmuCI | GTSAC | 4 cut(s) | 226, 667, 712, 1018 |
| NspI | RCATGY | 1 cut(s) | 219 |
| PceI | AGGCCT | 1 cut(s) | 92 |
| PciI | ACATGT | 1 cut(s) | 215 |
| PdmI | GAANNNNTTC | 2 cut(s) | 92, 386 |
| PfeI | GAWTC | 1 cut(s) | 550 |
| PflFI | GACNNNGTC | 1 cut(s) | 1113 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 32 |
| PkrI | GCNGC | 1 cut(s) | 1096 |
| PleI | GAGTC | 5 cut(s) | 120, 154, 727, 794, 877 |
| PpsI | GAGTC | 5 cut(s) | 120, 154, 727, 794, 877 |
| PscI | ACATGT | 1 cut(s) | 215 |
| Psp6I | CCWGG | 2 cut(s) | 187, 876 |
| PspEI | GGTNACC | 1 cut(s) | 821 |
| PspFI | CCCAGC | 1 cut(s) | 152 |
| PspGI | CCWGG | 2 cut(s) | 187, 876 |
| PspN4I | GGNNCC | 1 cut(s) | 1002 |
| PspPI | GGNCC | 2 cut(s) | 366, 1001 |
| PstI | CTGCAG | 1 cut(s) | 599 |
| PstNI | CAGNNNCTG | 1 cut(s) | 328 |
| PsyI | GACNNNGTC | 1 cut(s) | 1113 |
| RsaI | GTAC | 2 cut(s) | 467, 835 |
| RsaNI | GTAC | 2 cut(s) | 466, 834 |
| RseI | CAYNNNNRTG | 2 cut(s) | 543, 932 |
| SaqAI | TTAA | 3 cut(s) | 1025, 1041, 1080 |
| SatI | GCNGC | 1 cut(s) | 1095 |
| Sau3AI | GATC | 6 cut(s) | 106, 191, 231, 555, 981, 1071 |
| Sau96I | GGNCC | 2 cut(s) | 366, 1001 |
| ScaI | AGTACT | 1 cut(s) | 467 |
| SchI | GAGTC | 5 cut(s) | 120, 154, 727, 795, 877 |
| ScrFI | CCNGG | 3 cut(s) | 189, 860, 878 |
| SduI | GDGCHC | 1 cut(s) | 322 |
| SfaNI | GCATC | 4 cut(s) | 31, 334, 616, 784 |
| SfcI | CTRYAG | 1 cut(s) | 595 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 543, 932 |
| SmlI | CTYRAG | 3 cut(s) | 1040, 1079, 1131 |
| SmoI | CTYRAG | 3 cut(s) | 1040, 1079, 1131 |
| Sse9I | AATT | 2 cut(s) | 338, 446 |
| SseBI | AGGCCT | 1 cut(s) | 92 |
| SsiI | CCGC | 1 cut(s) | 298 |
| SspMI | CTAG | 5 cut(s) | 66, 393, 783, 804, 1053 |
| StuI | AGGCCT | 1 cut(s) | 92 |
| StyD4I | CCNGG | 3 cut(s) | 187, 858, 876 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 6 cut(s) | 77, 313, 799, 821, 833, 1115 |
| TaiI | ACGT | 2 cut(s) | 1015, 1052 |
| TaqII | GACCGA | 1 cut(s) | 914 |
| TasI | AATT | 2 cut(s) | 338, 446 |
| TatI | WGTACW | 1 cut(s) | 465 |
| TfiI | GAWTC | 1 cut(s) | 550 |
| Tru1I | TTAA | 3 cut(s) | 1025, 1041, 1080 |
| Tru9I | TTAA | 3 cut(s) | 1025, 1041, 1080 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 4 cut(s) | 226, 667, 712, 1018 |
| TseI | GCWGC | 1 cut(s) | 1094 |
| Tsp45I | GTSAC | 4 cut(s) | 226, 667, 712, 1018 |
| TspDTI | ATGAA | 7 cut(s) | 426, 473, 527, 660, 702, 857, 1075 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1113 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 32 |
| Vha464I | CTTAAG | 2 cut(s) | 1040, 1079 |
| XceI | RCATGY | 1 cut(s) | 219 |
| XmiI | GTMKAC | 1 cut(s) | 855 |
| XmnI | GAANNNNTTC | 2 cut(s) | 92, 386 |
| XspI | CTAG | 5 cut(s) | 66, 393, 783, 804, 1053 |
| ZraI | GACGTC | 1 cut(s) | 1050 |
| ZrmI | AGTACT | 1 cut(s) | 467 |