AT1G61580

Belongs to the universal ribosomal protein uL3 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22720560 .. 22723152
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61580.1

Sequence Viewer

Length: 1173 bp
ATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCCAAGGAAAAGAGCTAGCCGACACCGTGGGAAAGTGAAGGCCTTCCCTAAGGATGATCCAACTAAGCCTTGCAGACTCACCTCCTTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGATGTTGAAAAACCTGGATCAAAACTACACAAGAAGGAAACATGTGAAGCTGTGACGATCATTGAGACACCTCCAATGGTGGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGTGGTCTGCGGTCTCTATGCACTGTGTGGGCTCAGCATCTGAGCGAAGAATTGAGAAGGAGGTTCTACAAGAACTGGGCCAAGTCAAAGAAGAAGGCTTTCACTAGATATTCTAAGAAACATGAAACTGAAGAAGGGAAAAAAGATATTCAAAGTCAATTGGAGAAGATGAAGAAGTACTGCTCTGTCATCAGAGTTCTTGCTCACACTCAGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAAGGCACATCTGAATGAGATTCAGATCAATGGTGGAGATATAGCAAAGAAAGTTGACTATGCCTGCAGTTTATTTGAAAAACAAGTCCCAGTTGATGCCATCTTCCAGAAAGATGAAATGATTGATATCATTGGTGTCACCAAAGGAAAAGGTTATGAAGGTGTGGTTACAAGATGGGGAGTGACCCGACTTCCAAGAAAGACTCATCGTGGTCTTCGCAAGGTTGCTTGTATCGGTGCTTGGCATCCAGCTAGAGTCTCCTACACGGTGGCTAGAGCTGGACAAAACGGTTACCATCACCGTACTGAAATGAACAAGAAGGTATACCGGGTTGGGAAAGTTGGCCAGGAGACTCACTCAGCCATGACCGAGTATGACAGAACCGAGAAGGATATCACACCAATGGGAGGATTTCCCCACTATGGGATAGTGAAGGAAGATTATTTGATGATCAAGGGATGTTGCGTGGGGCCTAAGAAACGTGTGGTGACTTTAAGACAGACTTTGCTTAAGCAGACGTCTAGGCTTGCTATGGAGGAGATCAAGCTTAAGTTCATTGACGCTGCTTCCAATGGGGGACACGGTCGTTTCCAGACTTCTCAAGAGAAGGCCAAGTTCTATGGTAGAACCATCAAAGCTTAG

Protein Analysis

390

Amino Acids

44.55

Weight (kDa)

10.13

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 1 - 369 1.7e-193 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1052
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 855
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 101, 199
AcoI YGGCCR 1 cut(s) 874
AcuI CTGAAG 2 cut(s) 438, 542
AcyI GRCGYC 1 cut(s) 1049
AdeI CACNNNGTG 3 cut(s) 169, 290, 315
AfaI GTAC 2 cut(s) 467, 835
AfiI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 954
AflII CTTAAG 2 cut(s) 1040, 1079
AflIII ACRYGT 2 cut(s) 215, 1012
AgsI TTSAA 3 cut(s) 182, 440, 608
AjnI CCWGG 2 cut(s) 187, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 7 cut(s) 65, 152, 224, 782, 809, 1078, 1169
AluI AGCT 7 cut(s) 65, 152, 224, 782, 809, 1078, 1169
Alw26I GTCTC 5 cut(s) 9, 233, 306, 793, 875
AlwI GGATC 2 cut(s) 101, 199
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 5 cut(s) 90, 366, 874, 1001, 1140
ApeKI GCWGC 1 cut(s) 1094
Asp700I GAANNNNTTC 2 cut(s) 92, 386
AspS9I GGNCC 2 cut(s) 366, 1001
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 4 cut(s) 121, 661, 821, 1030
AsuNHI GCTAGC 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 99
BalI TGGCCA 1 cut(s) 876
BanII GRGCYC 1 cut(s) 322
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 737
BbvI GCAGC 1 cut(s) 1081
BccI CCATC 4 cut(s) 638, 699, 834, 1169
BciT130I CCWGG 2 cut(s) 189, 878
BciVI GTATCC 1 cut(s) 137
BclI TGATCA 1 cut(s) 981
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 5 cut(s) 9, 233, 306, 793, 875
BfaI CTAG 5 cut(s) 66, 393, 783, 804, 1053
BfmI CTRYAG 1 cut(s) 595
BfrI CTTAAG 2 cut(s) 1040, 1079
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 1 cut(s) 1095
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 1096
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 3 cut(s) 189, 860, 878
BmgT120I GGNCC 2 cut(s) 366, 1001
BmiI GGNNCC 1 cut(s) 1002
BmrFI CCNGG 3 cut(s) 189, 860, 878
BmrI ACTGGG 2 cut(s) 373, 614
BmsI GCATC 4 cut(s) 31, 334, 616, 784
BmtI GCTAGC 1 cut(s) 69
BmuI ACTGGG 2 cut(s) 373, 614
BpiI GAAGAC 1 cut(s) 737
BplI GAGNNNNNCTC 2 cut(s) 872, 904
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 1116
BpuMI CCSGG 1 cut(s) 860
BsaBI GATNNNNATC 2 cut(s) 554, 656
BsaHI GRCGYC 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 53, 76
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 938, 953, 954
Bse1I ACTGG 2 cut(s) 368, 620
Bse21I CCTNAGG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 554, 656
BseBI CCWGG 2 cut(s) 189, 878
BseDI CCNNGG 2 cut(s) 53, 76
BseGI GGATG 5 cut(s) 22, 109, 162, 775, 995
BseJI GATNNNNATC 2 cut(s) 554, 656
BseLI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 954
BseMII CTCAG 4 cut(s) 320, 335, 512, 903
BseNI ACTGG 2 cut(s) 368, 620
BseRI GAGGAG 1 cut(s) 1082
BseXI GCAGC 1 cut(s) 1081
BseYI CCCAGC 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 1117
BshFI GGCC 5 cut(s) 92, 368, 876, 1003, 1142
BsiEI CGRYCG 1 cut(s) 1117
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 2 cut(s) 602, 1122
BslI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 954
BsmAI GTCTC 5 cut(s) 9, 233, 306, 793, 875
BsmFI GGGAC 2 cut(s) 602, 1122
BsnI GGCC 5 cut(s) 92, 368, 876, 1003, 1142
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 298
BspANI GGCC 5 cut(s) 92, 368, 876, 1003, 1142
BspCNI CTCAG 4 cut(s) 321, 334, 511, 902
BspLI GGNNCC 1 cut(s) 1002
BspMAI CTGCAG 1 cut(s) 599
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 2 cut(s) 101, 199
BspTI CTTAAG 2 cut(s) 1040, 1079
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 2 cut(s) 368, 620
BssECI CCNNGG 2 cut(s) 53, 76
BssMI GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
BssNAI GTATAC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 1049
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 856
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 189, 878
Bst4CI ACNGT 6 cut(s) 77, 313, 799, 821, 833, 1115
BstACI GRCGYC 1 cut(s) 1049
BstAFI CTTAAG 2 cut(s) 1040, 1079
BstC8I GCNNGC 3 cut(s) 67, 595, 1059
BstDEI CTNAG 9 cut(s) 99, 114, 321, 329, 402, 498, 889, 1005, 1170
BstDSI CCRYGG 1 cut(s) 76
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 5 cut(s) 22, 109, 162, 775, 995
BstKTI GATC 6 cut(s) 109, 194, 234, 558, 984, 1074
BstMAI GTCTC 5 cut(s) 9, 233, 306, 793, 875
BstMBI GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
BstMCI CGRYCG 1 cut(s) 1117
BstNI CCWGG 2 cut(s) 189, 878
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 187, 858, 876
BstSFI CTRYAG 1 cut(s) 595
BstV1I GCAGC 1 cut(s) 1081
BstV2I GAAGAC 1 cut(s) 737
BstZ17I GTATAC 1 cut(s) 856
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 5 cut(s) 92, 368, 876, 1003, 1142
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 5 cut(s) 22, 109, 162, 775, 995
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 67, 595, 1059
CaiI CAGNNNCTG 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 366, 1001
CseI GACGC 1 cut(s) 1100
Csp6I GTAC 2 cut(s) 466, 834
CviAII CATG 4 cut(s) 32, 216, 410, 895
CviQI GTAC 2 cut(s) 466, 834
DdeI CTNAG 9 cut(s) 99, 114, 321, 329, 402, 498, 889, 1005, 1170
DpnI GATC 6 cut(s) 108, 193, 233, 557, 983, 1073
DpnII GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
DraIII CACNNNGTG 3 cut(s) 169, 290, 315
EaeI YGGCCR 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 2 cut(s) 658, 925
Eco57I CTGAAG 2 cut(s) 438, 542
Eco81I CCTNAGG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 1001
EcoO65I GGTNACC 1 cut(s) 821
EcoRII CCWGG 2 cut(s) 187, 876
EcoRV GATATC 2 cut(s) 658, 925
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 35, 219, 413, 898
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FaqI GGGAC 2 cut(s) 602, 1122
FatI CATG 4 cut(s) 31, 215, 409, 894
FbaI TGATCA 1 cut(s) 981
FblI GTMKAC 1 cut(s) 855
Fnu4HI GCNGC 1 cut(s) 1095
FokI GGATG 5 cut(s) 9, 116, 169, 762, 1002
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 1095
FspBI CTAG 5 cut(s) 66, 393, 783, 804, 1053
GluI GCNGC 1 cut(s) 1095
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 5 cut(s) 92, 368, 876, 1003, 1142
HapII CCGG 1 cut(s) 859
HgaI GACGC 1 cut(s) 1100
Hin1I GRCGYC 1 cut(s) 1049
Hin1II CATG 4 cut(s) 35, 219, 413, 898
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 2 cut(s) 1076, 1167
HinfI GANTC 6 cut(s) 126, 160, 550, 733, 786, 883
HpaII CCGG 1 cut(s) 859
HphI GGTGA 4 cut(s) 121, 661, 821, 1030
Hpy166II GTNNAC 2 cut(s) 586, 856
Hpy188I TCNGA 5 cut(s) 330, 482, 501, 543, 555
Hpy188III TCNNGA 3 cut(s) 637, 1123, 1133
Hpy8I GTNNAC 2 cut(s) 586, 856
HpyCH4III ACNGT 6 cut(s) 77, 313, 799, 821, 833, 1115
HpyCH4IV ACGT 2 cut(s) 1012, 1049
HpyCH4V TGCA 3 cut(s) 123, 309, 597
HpyF3I CTNAG 9 cut(s) 99, 114, 321, 329, 402, 498, 889, 1005, 1170
HpySE526I ACGT 2 cut(s) 1012, 1049
Hsp92I GRCGYC 1 cut(s) 1049
Hsp92II CATG 4 cut(s) 35, 219, 413, 898
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
Lsp1109I GCAGC 1 cut(s) 1081
LweI GCATC 4 cut(s) 31, 334, 616, 784
MaeI CTAG 5 cut(s) 66, 393, 783, 804, 1053
MaeII ACGT 2 cut(s) 1012, 1049
MaeIII GTNAC 6 cut(s) 226, 667, 697, 712, 821, 1018
MalI GATC 6 cut(s) 108, 193, 233, 557, 983, 1073
MboI GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
MboII GAAGA 9 cut(s) 347, 391, 431, 466, 472, 541, 625, 737, 980
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 876
MluCI AATT 2 cut(s) 338, 446
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 5 cut(s) 120, 154, 727, 795, 877
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 6 cut(s) 142, 255, 297, 342, 932, 1060
Mox20I TGGCCA 1 cut(s) 876
MroXI GAANNNNTTC 2 cut(s) 92, 386
MscI TGGCCA 1 cut(s) 876
MseI TTAA 3 cut(s) 1025, 1041, 1080
MslI CAYNNNNRTG 2 cut(s) 543, 932
Msp20I TGGCCA 1 cut(s) 876
MspCI CTTAAG 2 cut(s) 1040, 1079
MspI CCGG 1 cut(s) 859
MspR9I CCNGG 3 cut(s) 189, 860, 878
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 2 cut(s) 189, 878
NciI CCSGG 1 cut(s) 860
NdeII GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 35, 219, 413, 898
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 4 cut(s) 226, 667, 712, 1018
NspI RCATGY 1 cut(s) 219
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 92, 386
PfeI GAWTC 1 cut(s) 550
PflFI GACNNNGTC 1 cut(s) 1113
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 1096
PleI GAGTC 5 cut(s) 120, 154, 727, 794, 877
PpsI GAGTC 5 cut(s) 120, 154, 727, 794, 877
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 187, 876
PspEI GGTNACC 1 cut(s) 821
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 187, 876
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 2 cut(s) 366, 1001
PstI CTGCAG 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 328
PsyI GACNNNGTC 1 cut(s) 1113
RsaI GTAC 2 cut(s) 467, 835
RsaNI GTAC 2 cut(s) 466, 834
RseI CAYNNNNRTG 2 cut(s) 543, 932
SaqAI TTAA 3 cut(s) 1025, 1041, 1080
SatI GCNGC 1 cut(s) 1095
Sau3AI GATC 6 cut(s) 106, 191, 231, 555, 981, 1071
Sau96I GGNCC 2 cut(s) 366, 1001
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 5 cut(s) 120, 154, 727, 795, 877
ScrFI CCNGG 3 cut(s) 189, 860, 878
SduI GDGCHC 1 cut(s) 322
SfaNI GCATC 4 cut(s) 31, 334, 616, 784
SfcI CTRYAG 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 543, 932
SmlI CTYRAG 3 cut(s) 1040, 1079, 1131
SmoI CTYRAG 3 cut(s) 1040, 1079, 1131
Sse9I AATT 2 cut(s) 338, 446
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 298
SspMI CTAG 5 cut(s) 66, 393, 783, 804, 1053
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 3 cut(s) 187, 858, 876
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 6 cut(s) 77, 313, 799, 821, 833, 1115
TaiI ACGT 2 cut(s) 1015, 1052
TaqII GACCGA 1 cut(s) 914
TasI AATT 2 cut(s) 338, 446
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 3 cut(s) 1025, 1041, 1080
Tru9I TTAA 3 cut(s) 1025, 1041, 1080
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 4 cut(s) 226, 667, 712, 1018
TseI GCWGC 1 cut(s) 1094
Tsp45I GTSAC 4 cut(s) 226, 667, 712, 1018
TspDTI ATGAA 7 cut(s) 426, 473, 527, 660, 702, 857, 1075
TspRI CASTG 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 1113
Van91I CCANNNNNTGG 1 cut(s) 32
Vha464I CTTAAG 2 cut(s) 1040, 1079
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 855
XmnI GAANNNNTTC 2 cut(s) 92, 386
XspI CTAG 5 cut(s) 66, 393, 783, 804, 1053
ZraI GACGTC 1 cut(s) 1050
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.