Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

29695258 .. 29696449

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTGGTTGTTGGGGTTGTGGGTTATGTGAAGACACCCCGTGGTCTCCGTTCTTTGGACACAGTTTGGGCCCAGCACCTGAGTGAGGAGGTGAAGAGAAGATTCTACAAGAACTGGTGTAAGTCTAAAAAGAAGGCATTCACTAAGCACTCGAACAAATACGAGAGTGAAAATGGGAAAAGGGACATCCACGCCCAATTGGAGAAAATGAAAAAGTACTGCTCCGTGATTCGTGTTTTAGCCCACACTCAGATTAGAAAAATGAAGGGACTGAAGCAGAAGAAAGCCCATTTGATGGAGATTCAGGTGAATGGTGGAGATATTGCAAAGAAGGTTGACTATGCTTACAGCTTCTTTGAGAAGCAGATTCCTGTTGATGCTGTTTTCCAGAAAGATGAGATGATTGACATCATTGGGGTGACAAGGGGAAAAGGCTATGAGGGTGTGGTCACTCGCTGGGGTGTCACTCGTCTTCCCCGTAAGACCCATCGTGGGCTTAGAAAAGTAGCCTGCATTGGTGCTTGGCATCCAGCTAGGGTTTCGTTTACTGTTGCCAGGGCTGGGCAGAATGGCTACCATCATCGTACTGAGATGAACAAGAAGATATACAAGCTTGGAAAGTCTGGGCAGGAGTCTCACTCTGCAATGACCGAGTTTGACAGGACCGAGAAGGATATTACGCCCATGGGTGGTTTCCCACATTATGGTGGGGTGAAAGAGGATTATCTTGTCATAAAGGGCTGCTGTGTAGGTCCGAAAAAGCGAGTTGTTACCTTGAGGCAGTCACTTTTGAAGCAGACATCACGGGTTGCCATGGAGGAGATAAAGCTCAAGTTCATTGATACGTCATCCAAATTTGGCCATGGTCGTTTCCAAACTACACAAGAGAAGGCAAGGTTCTATGGCCAGCTCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

307

Amino Acids

35.07

Weight (kDa)

10.07

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	1 - 287	2.6e-146	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	295, 704
AcoI	YGGCCR	2 cut(s)	859, 904
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	218, 586
AfiI	CCNNNNNNNGG	8 cut(s)	55, 85, 295, 492, 561, 689, 704, 913
AgsI	TTSAA	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	554
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	5 cut(s)	351, 533, 613, 829, 910
AluI	AGCT	5 cut(s)	351, 533, 613, 829, 910
Alw26I	GTCTC	2 cut(s)	50, 639
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	3 cut(s)	69, 859, 904
ApaI	GGGCCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	741
ApoI	RAATTY	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	4 cut(s)	69, 70, 663, 752
AsuHPI	GGTGA	4 cut(s)	103, 319, 430, 724
AvaII	GGWCC	2 cut(s)	663, 752
BaeGI	GKGCMC	1 cut(s)	73
BalI	TGGCCA	2 cut(s)	861, 906
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	38, 464
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	3 cut(s)	289, 495, 585
BciT130I	CCWGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	50, 639
BfaI	CTAG	1 cut(s)	534
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	663, 752
BmgT120I	GGNCC	4 cut(s)	69, 70, 663, 752
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	367, 535
BpiI	GAAGAC	2 cut(s)	38, 464
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpuEI	CTTGAG	3 cut(s)	796, 815, 896
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	5 cut(s)	40, 555, 684, 813, 862
Bsc4I	CCNNNNNNNGG	8 cut(s)	55, 85, 295, 492, 561, 689, 704, 913
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	5 cut(s)	40, 555, 684, 813, 862
BseGI	GGATG	3 cut(s)	186, 526, 848
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	8 cut(s)	55, 85, 295, 492, 561, 689, 704, 913
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	3 cut(s)	71, 263, 579
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	101, 833
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	728
BseYI	CCCAGC	3 cut(s)	72, 456, 560
BshFI	GGCC	3 cut(s)	71, 861, 906
BslFI	GGGAC	2 cut(s)	197, 282
BslI	CCNNNNNNNGG	8 cut(s)	55, 85, 295, 492, 561, 689, 704, 913
BsmAI	GTCTC	2 cut(s)	50, 639
BsmFI	GGGAC	2 cut(s)	197, 282
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	71, 861, 906
Bso31I	GGTCTC	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp19I	CCATGG	3 cut(s)	684, 813, 862
BspANI	GGCC	3 cut(s)	71, 861, 906
BspCNI	CTCAG	3 cut(s)	72, 262, 580
BspLI	GGNNCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	5 cut(s)	40, 555, 684, 813, 862
BssT1I	CCWWGG	3 cut(s)	684, 813, 862
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	64, 550
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	511, 908
BstDEI	CTNAG	5 cut(s)	80, 144, 249, 497, 588
BstDSI	CCRYGG	4 cut(s)	40, 684, 813, 862
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	3 cut(s)	186, 526, 848
BstMAI	GTCTC	2 cut(s)	50, 639
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	728
BstV2I	GAAGAC	2 cut(s)	38, 464
BsuRI	GGCC	3 cut(s)	71, 861, 906
BtgI	CCRYGG	4 cut(s)	40, 684, 813, 862
BtsCI	GGATG	3 cut(s)	186, 526, 848
Cac8I	GCNNGC	2 cut(s)	511, 908
CaiI	CAGNNNCTG	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	69, 70, 663, 752
Csp6I	GTAC	2 cut(s)	217, 585
CviAII	CATG	3 cut(s)	685, 814, 863
CviQI	GTAC	2 cut(s)	217, 585
DdeI	CTNAG	5 cut(s)	80, 144, 249, 497, 588
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	859, 904
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	684, 813, 862
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	663, 752
Eco57I	CTGAAG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	3 cut(s)	684, 813, 862
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	3 cut(s)	684, 813, 862
FaeI	CATG	3 cut(s)	688, 817, 866
FaqI	GGGAC	2 cut(s)	197, 282
FatI	CATG	3 cut(s)	684, 813, 862
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	3 cut(s)	173, 513, 835
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	1 cut(s)	742
GsaI	CCCAGC	3 cut(s)	76, 460, 564
HaeIII	GGCC	3 cut(s)	71, 861, 906
Hin1II	CATG	3 cut(s)	688, 817, 866
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	5 cut(s)	102, 229, 301, 367, 632
HphI	GGTGA	4 cut(s)	103, 319, 430, 724
Hpy166II	GTNNAC	2 cut(s)	337, 546
Hpy188I	TCNGA	2 cut(s)	252, 756
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	2 cut(s)	337, 546
HpyAV	CCTTC	5 cut(s)	127, 259, 325, 664, 883
HpyCH4III	ACNGT	2 cut(s)	64, 550
HpyCH4IV	ACGT	1 cut(s)	845
HpyCH4V	TGCA	3 cut(s)	326, 513, 644
HpyF3I	CTNAG	5 cut(s)	80, 144, 249, 497, 588
HpySE526I	ACGT	1 cut(s)	845
Hsp92II	CATG	3 cut(s)	688, 817, 866
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	728
LweI	GCATC	2 cut(s)	367, 535
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	845
MaeIII	GTNAC	5 cut(s)	418, 448, 463, 769, 783
MboII	GAAGA	6 cut(s)	43, 106, 111, 292, 464, 613
MfeI	CAATTG	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	2 cut(s)	861, 906
MluCI	AATT	2 cut(s)	197, 854
MluNI	TGGCCA	2 cut(s)	861, 906
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	6 cut(s)	79, 82, 433, 712, 771, 811
Mox20I	TGGCCA	2 cut(s)	861, 906
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	2 cut(s)	861, 906
MslI	CAYNNNNRTG	3 cut(s)	81, 416, 705
Msp20I	TGGCCA	2 cut(s)	861, 906
MspR9I	CCNGG	1 cut(s)	556
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	556
NcoI	CCATGG	3 cut(s)	684, 813, 862
NlaIII	CATG	3 cut(s)	688, 817, 866
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	4 cut(s)	418, 448, 463, 783
OliI	CACNNNNGTG	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	4 cut(s)	102, 229, 301, 367
PflMI	CCANNNNNTGG	2 cut(s)	295, 704
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	554
PspFI	CCCAGC	3 cut(s)	72, 456, 560
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	71
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	4 cut(s)	69, 70, 663, 752
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	218, 586
RsaNI	GTAC	2 cut(s)	217, 585
RseI	CAYNNNNRTG	3 cut(s)	81, 416, 705
SatI	GCNGC	1 cut(s)	742
Sau96I	GGNCC	4 cut(s)	69, 70, 663, 752
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	2 cut(s)	367, 535
SinI	GGWCC	2 cut(s)	663, 752
SmiMI	CAYNNNNRTG	3 cut(s)	81, 416, 705
SmlI	CTYRAG	3 cut(s)	775, 830, 911
SmoI	CTYRAG	3 cut(s)	775, 830, 911
Sse9I	AATT	2 cut(s)	197, 854
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	3 cut(s)	684, 813, 862
TaaI	ACNGT	2 cut(s)	64, 550
TaiI	ACGT	1 cut(s)	848
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	2 cut(s)	665, 680
TasI	AATT	2 cut(s)	197, 854
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	4 cut(s)	102, 229, 301, 367
TseFI	GTSAC	4 cut(s)	418, 448, 463, 783
TseI	GCWGC	1 cut(s)	741
Tsp45I	GTSAC	4 cut(s)	418, 448, 463, 783
TspDTI	ATGAA	4 cut(s)	224, 278, 608, 826
TspGWI	ACGGA	2 cut(s)	38, 214
Van91I	CCANNNNNTGG	2 cut(s)	295, 704
VpaK11BI	GGWCC	2 cut(s)	663, 752
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.